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Conserved domains on  [gi|1699063857|gb|TQK40287|]
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uncharacterized protein DUF4402 [Vibrio crassostreae]

Protein Classification

DUF4402 domain-containing protein( domain architecture ID 10627134)

DUF4402 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4402 pfam14352
Domain of unknown function (DUF4402); This family of proteins is functionally uncharacterized. ...
 59-144 6.50e-06

Domain of unknown function (DUF4402); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 182 amino acids in length.


:

Pssm-ID: 433894  Cd Length: 129  Bit Score: 42.68  E-value: 6.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063857  59 RFYVEGEPGKKIVVSLPSKQYLNHSrKSKRLRIRKFyfGCGLSKrGRAKIKGNGRSKLLCIGAKVKIGANHPAGLYTSTI 138
Cdd:pfam14352  48 TFTVSGEPGSTVTISLPASVTLTGG-GGSTMTVDNF--TTSLTG-GGALGTAGAGTATFSVGGTLTVGANQAAGSYSGTF 123


                  ....*.
gi 1699063857 139 PFEVNY 144
Cdd:pfam14352 124 TVTVNY 129
 
Name Accession Description Interval E-value
DUF4402 pfam14352
Domain of unknown function (DUF4402); This family of proteins is functionally uncharacterized. ...
 59-144 6.50e-06

Domain of unknown function (DUF4402); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 182 amino acids in length.


Pssm-ID: 433894  Cd Length: 129  Bit Score: 42.68  E-value: 6.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063857  59 RFYVEGEPGKKIVVSLPSKQYLNHSrKSKRLRIRKFyfGCGLSKrGRAKIKGNGRSKLLCIGAKVKIGANHPAGLYTSTI 138
Cdd:pfam14352  48 TFTVSGEPGSTVTISLPASVTLTGG-GGSTMTVDNF--TTSLTG-GGALGTAGAGTATFSVGGTLTVGANQAAGSYSGTF 123


                  ....*.
gi 1699063857 139 PFEVNY 144
Cdd:pfam14352 124 TVTVNY 129
 
Name Accession Description Interval E-value
DUF4402 pfam14352
Domain of unknown function (DUF4402); This family of proteins is functionally uncharacterized. ...
 59-144 6.50e-06

Domain of unknown function (DUF4402); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 182 amino acids in length.


Pssm-ID: 433894  Cd Length: 129  Bit Score: 42.68  E-value: 6.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063857  59 RFYVEGEPGKKIVVSLPSKQYLNHSrKSKRLRIRKFyfGCGLSKrGRAKIKGNGRSKLLCIGAKVKIGANHPAGLYTSTI 138
Cdd:pfam14352  48 TFTVSGEPGSTVTISLPASVTLTGG-GGSTMTVDNF--TTSLTG-GGALGTAGAGTATFSVGGTLTVGANQAAGSYSGTF 123


                  ....*.
gi 1699063857 139 PFEVNY 144
Cdd:pfam14352 124 TVTVNY 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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