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Conserved domains on  [gi|1699063862|gb|TQK40292|]
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AraC family transcriptional regulator [Vibrio crassostreae]

Protein Classification

AraC family transcriptional regulator( domain architecture ID 12117701)

AraC family transcriptional regulator containing an AraC family HTH domain and an N-terminal arabinose binding domain, may regulate the expression of genes with diverse biological functions including metabolism, stress response, and virulence.

Gene Ontology:  GO:0003700

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Arabinose_bd pfam12625
Arabinose-binding domain of AraC transcription regulator, N-term; AraC is a bacterial ...
 32-215 8.17e-31

Arabinose-binding domain of AraC transcription regulator, N-term; AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].


:

Pssm-ID: 432679  Cd Length: 185  Bit Score: 115.05  E-value: 8.17e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862  32 GLDIERLLNDVGLPNMDWRDPNGKLTYADKLALFSVANQSFPHDGLGLWLGDHASLSHFGVLGYALSTSQNVGEAIKSGF 111
Cdd:pfam12625   1 GLDPAALLRRAGLDPALLADPDARVPLDQYLRLWEAAARELGDPALGLRLGRRLRPGSLGLLGYAALSSPTLGEALDRLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862 112 KYLRLNGPIFSVKLFLDS-EQAVIQIENTLEVGDLLPFCSEYFLSSIVSLFKELTGHELDIHTLALPYARPNYAKLYDER 190
Cdd:pfam12625  81 RYLRLLSDALELRLEEGEgGLARLRLDVRPIPGRRRDFLLELALAALLRLARWLLGRRLPPLRVEFPHPAPADAAEYERL 160

                         170       180
                  ....*....|....*....|....*
gi 1699063862 191 FQCPVIFEQSHCELRFDVSVLSQTL 215
Cdd:pfam12625 161 FGCPVRFGAPRNALVFDAADLDRPL 185
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
259-340 4.90e-20

helix_turn_helix, arabinose operon control protein;


:

Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 82.99  E-value: 4.90e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862  259 PTIEQLALEFGCSSRTLRRELVSHNS-SYQALLTEVRVELAKELLLGTSMSIDDIGERLGYSDPANFRRAFKGWLSKTPA 337
Cdd:smart00342   2 LTLEDLAEALGVSPRHLQRLFKKETGtTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTPS 81


                   ...
gi 1699063862  338 QFR 340
Cdd:smart00342  82 EYR 84
 
Name Accession Description Interval E-value
Arabinose_bd pfam12625
Arabinose-binding domain of AraC transcription regulator, N-term; AraC is a bacterial ...
 32-215 8.17e-31

Arabinose-binding domain of AraC transcription regulator, N-term; AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].


Pssm-ID: 432679  Cd Length: 185  Bit Score: 115.05  E-value: 8.17e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862  32 GLDIERLLNDVGLPNMDWRDPNGKLTYADKLALFSVANQSFPHDGLGLWLGDHASLSHFGVLGYALSTSQNVGEAIKSGF 111
Cdd:pfam12625   1 GLDPAALLRRAGLDPALLADPDARVPLDQYLRLWEAAARELGDPALGLRLGRRLRPGSLGLLGYAALSSPTLGEALDRLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862 112 KYLRLNGPIFSVKLFLDS-EQAVIQIENTLEVGDLLPFCSEYFLSSIVSLFKELTGHELDIHTLALPYARPNYAKLYDER 190
Cdd:pfam12625  81 RYLRLLSDALELRLEEGEgGLARLRLDVRPIPGRRRDFLLELALAALLRLARWLLGRRLPPLRVEFPHPAPADAAEYERL 160

                         170       180
                  ....*....|....*....|....*
gi 1699063862 191 FQCPVIFEQSHCELRFDVSVLSQTL 215
Cdd:pfam12625 161 FGCPVRFGAPRNALVFDAADLDRPL 185
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
259-340 4.90e-20

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 82.99  E-value: 4.90e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862  259 PTIEQLALEFGCSSRTLRRELVSHNS-SYQALLTEVRVELAKELLLGTSMSIDDIGERLGYSDPANFRRAFKGWLSKTPA 337
Cdd:smart00342   2 LTLEDLAEALGVSPRHLQRLFKKETGtTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTPS 81


                   ...
gi 1699063862  338 QFR 340
Cdd:smart00342  82 EYR 84
HTH_18 pfam12833
Helix-turn-helix domain;
264-340 5.11e-19

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 80.33  E-value: 5.11e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1699063862 264 LALEFGCSSRTLRRELVSH-NSSYQALLTEVRVELAKELLL-GTSMSIDDIGERLGYSDPANFRRAFKGWLSKTPAQFR 340
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRElGLSPKEYLRRLRLERARRLLLeDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYR 79
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
111-340 1.09e-18

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 84.45  E-value: 1.09e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862 111 FKYLRLNGPIFSVKLFLDSEQAVIQIENTLEVGDLLPFCSEYFLSSIVSLFKELTGHELDIHTLALPYARPNYAKLYDER 190
Cdd:COG2207    21 LLLLLLLILLLLALVLLLLLLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862 191 FQCPVIFEQSHCELRFDVSVLSQTLLTHDAATLKRYLTSCQSIVETLDSEHLLTNQIKTIFYQTAGSFPTIEQLALEFGC 270
Cdd:COG2207   101 LLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLTLEELARELGL 180

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1699063862 271 SSRTLRRELVSH-NSSYQALLTEVRVELAKELLLGTSMSIDDIGERLGYSDPANFRRAFKGWLSKTPAQFR 340
Cdd:COG2207   181 SPRTLSRLFKEEtGTSPKQYLRELRLERAKRLLAETDLSISEIAYELGFSSQSHFSRAFKKRFGVTPSEYR 251
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 260-340 8.34e-17

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 79.82  E-value: 8.34e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862 260 TIEQLALEFGCSSRTL----RRELvshNSSYQALLTEVRVELAKELLLGTSMSIDDIGERLGYSDPANFRRAFKGWLSKT 335
Cdd:COG4977   228 SVDELARRAGMSPRTLerrfRAAT---GTTPARYLQRLRLERARRLLETTDLSIEEIAAACGFGSASHFRRAFRRRFGVS 304


                  ....*
gi 1699063862 336 PAQFR 340
Cdd:COG4977   305 PSAYR 309
ftrA PRK09393
transcriptional activator FtrA; Provisional
 260-340 7.67e-10

transcriptional activator FtrA; Provisional


Pssm-ID: 181818 [Multi-domain]  Cd Length: 322  Bit Score: 59.21  E-value: 7.67e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862 260 TIEQLALEFGCSSRTLRRELVSHN--SSYQALLTEvRVELAKELLLGTSMSIDDIGERLGYSDPANFRRAFKGWLSKTPA 337
Cdd:PRK09393  236 TVASLAARAAMSPRTFLRRFEAATgmTPAEWLLRE-RLARARDLLESSALSIDQIAERAGFGSEESLRHHFRRRAATSPA 314


                  ...
gi 1699063862 338 QFR 340
Cdd:PRK09393  315 AYR 317
 
Name Accession Description Interval E-value
Arabinose_bd pfam12625
Arabinose-binding domain of AraC transcription regulator, N-term; AraC is a bacterial ...
 32-215 8.17e-31

Arabinose-binding domain of AraC transcription regulator, N-term; AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].


Pssm-ID: 432679  Cd Length: 185  Bit Score: 115.05  E-value: 8.17e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862  32 GLDIERLLNDVGLPNMDWRDPNGKLTYADKLALFSVANQSFPHDGLGLWLGDHASLSHFGVLGYALSTSQNVGEAIKSGF 111
Cdd:pfam12625   1 GLDPAALLRRAGLDPALLADPDARVPLDQYLRLWEAAARELGDPALGLRLGRRLRPGSLGLLGYAALSSPTLGEALDRLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862 112 KYLRLNGPIFSVKLFLDS-EQAVIQIENTLEVGDLLPFCSEYFLSSIVSLFKELTGHELDIHTLALPYARPNYAKLYDER 190
Cdd:pfam12625  81 RYLRLLSDALELRLEEGEgGLARLRLDVRPIPGRRRDFLLELALAALLRLARWLLGRRLPPLRVEFPHPAPADAAEYERL 160

                         170       180
                  ....*....|....*....|....*
gi 1699063862 191 FQCPVIFEQSHCELRFDVSVLSQTL 215
Cdd:pfam12625 161 FGCPVRFGAPRNALVFDAADLDRPL 185
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
259-340 4.90e-20

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 82.99  E-value: 4.90e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862  259 PTIEQLALEFGCSSRTLRRELVSHNS-SYQALLTEVRVELAKELLLGTSMSIDDIGERLGYSDPANFRRAFKGWLSKTPA 337
Cdd:smart00342   2 LTLEDLAEALGVSPRHLQRLFKKETGtTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTPS 81


                   ...
gi 1699063862  338 QFR 340
Cdd:smart00342  82 EYR 84
HTH_18 pfam12833
Helix-turn-helix domain;
264-340 5.11e-19

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 80.33  E-value: 5.11e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1699063862 264 LALEFGCSSRTLRRELVSH-NSSYQALLTEVRVELAKELLL-GTSMSIDDIGERLGYSDPANFRRAFKGWLSKTPAQFR 340
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRElGLSPKEYLRRLRLERARRLLLeDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYR 79
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
111-340 1.09e-18

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 84.45  E-value: 1.09e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862 111 FKYLRLNGPIFSVKLFLDSEQAVIQIENTLEVGDLLPFCSEYFLSSIVSLFKELTGHELDIHTLALPYARPNYAKLYDER 190
Cdd:COG2207    21 LLLLLLLILLLLALVLLLLLLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862 191 FQCPVIFEQSHCELRFDVSVLSQTLLTHDAATLKRYLTSCQSIVETLDSEHLLTNQIKTIFYQTAGSFPTIEQLALEFGC 270
Cdd:COG2207   101 LLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLTLEELARELGL 180

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1699063862 271 SSRTLRRELVSH-NSSYQALLTEVRVELAKELLLGTSMSIDDIGERLGYSDPANFRRAFKGWLSKTPAQFR 340
Cdd:COG2207   181 SPRTLSRLFKEEtGTSPKQYLRELRLERAKRLLAETDLSISEIAYELGFSSQSHFSRAFKKRFGVTPSEYR 251
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 260-340 8.34e-17

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 79.82  E-value: 8.34e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862 260 TIEQLALEFGCSSRTL----RRELvshNSSYQALLTEVRVELAKELLLGTSMSIDDIGERLGYSDPANFRRAFKGWLSKT 335
Cdd:COG4977   228 SVDELARRAGMSPRTLerrfRAAT---GTTPARYLQRLRLERARRLLETTDLSIEEIAAACGFGSASHFRRAFRRRFGVS 304


                  ....*
gi 1699063862 336 PAQFR 340
Cdd:COG4977   305 PSAYR 309
AdaA COG2169
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ...
 253-342 1.81e-10

Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];


Pssm-ID: 441772 [Multi-domain]  Cd Length: 358  Bit Score: 61.22  E-value: 1.81e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862 253 QTAGSFPTIEQLALEFGCSSRTLRRELVSH-NSSYQALLTEVRVELAKELLlGTSMSIDDIGERLGYSDPANFRRAFKGW 331
Cdd:COG2169    95 AGAEDRPSLEDLAARLGLSPRHLRRLFKAHtGVTPKAYARARRLLRARQLL-QTGLSVTDAAYAAGFGSLSRFYEAFKKL 173

                          90
                  ....*....|.
gi 1699063862 332 LSKTPAQFRDG 342
Cdd:COG2169   174 LGMTPSAYRRG 184
ftrA PRK09393
transcriptional activator FtrA; Provisional
 260-340 7.67e-10

transcriptional activator FtrA; Provisional


Pssm-ID: 181818 [Multi-domain]  Cd Length: 322  Bit Score: 59.21  E-value: 7.67e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862 260 TIEQLALEFGCSSRTLRRELVSHN--SSYQALLTEvRVELAKELLLGTSMSIDDIGERLGYSDPANFRRAFKGWLSKTPA 337
Cdd:PRK09393  236 TVASLAARAAMSPRTFLRRFEAATgmTPAEWLLRE-RLARARDLLESSALSIDQIAERAGFGSEESLRHHFRRRAATSPA 314


                  ...
gi 1699063862 338 QFR 340
Cdd:PRK09393  315 AYR 317
PRK10572 PRK10572
arabinose operon transcriptional regulator AraC;
294-340 1.21e-05

arabinose operon transcriptional regulator AraC;


Pssm-ID: 236717 [Multi-domain]  Cd Length: 290  Bit Score: 46.12  E-value: 1.21e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1699063862 294 RVELAKELLLGTSMSIDDIGERLGYSDPANFRRAFKGWLSKTPAQFR 340
Cdd:PRK10572  236 RISRAKLLLQTTRMPIATIGRNVGYDDQLYFSRVFKKCTGASPSEFR 282
PRK10296 PRK10296
DNA-binding transcriptional regulator ChbR; Provisional
 289-344 4.80e-04

DNA-binding transcriptional regulator ChbR; Provisional


Pssm-ID: 182362 [Multi-domain]  Cd Length: 278  Bit Score: 41.28  E-value: 4.80e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1699063862 289 LLTEVRVELAKELLLGTSMSIDDIGERLGYSDPANFRRAFKGWLSKTPAQFRDGLS 344
Cdd:PRK10296  220 IINEIRINFAKKQLEMTNYSVTDIAFEAGYSSPSLFIKTFKKLTSFTPGSYRKKLT 275
HTH_AraC pfam00165
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ...
 305-340 7.40e-04

Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.


Pssm-ID: 425497 [Multi-domain]  Cd Length: 42  Bit Score: 36.75  E-value: 7.40e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1699063862 305 TSMSIDDIGERLGYSdPANFRRAFKGWLSKTPAQFR 340
Cdd:pfam00165   7 TNLTIADIADELGFS-RSYFSRLFKKYTGVTPSQYR 41
PRK09978 PRK09978
DNA-binding transcriptional regulator GadX; Provisional
 260-341 8.80e-04

DNA-binding transcriptional regulator GadX; Provisional


Pssm-ID: 137624 [Multi-domain]  Cd Length: 274  Bit Score: 40.68  E-value: 8.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862 260 TIEQLALEFGCSSRTLRRELVSHNSSYQALLTEVRVELAKELLLGTSMSIDDIGERLGYSDPANFRRAFKGWLSKTPAQF 339
Cdd:PRK09978  160 TLARIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEY 239


                  ..
gi 1699063862 340 RD 341
Cdd:PRK09978  240 QE 241
PRK10219 PRK10219
superoxide response transcriptional regulator SoxS;
241-340 1.12e-03

superoxide response transcriptional regulator SoxS;


Pssm-ID: 182314 [Multi-domain]  Cd Length: 107  Bit Score: 37.98  E-value: 1.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862 241 HLLTNQIKTIFYQTAgsfpTIEQLALEFGCSSRTLRR--ELVSHnssyQAL---LTEVRVELAKELLLGTSMSIDDIGER 315
Cdd:PRK10219    8 QTLIAWIDEHIDQPL----NIDVVAKKSGYSKWYLQRmfRTVTH----QTLgdyIRQRRLLLAAVELRTTERPIFDIAMD 79

                          90       100
                  ....*....|....*....|....*
gi 1699063862 316 LGYSDPANFRRAFKGWLSKTPAQFR 340
Cdd:PRK10219   80 LGYVSQQTFSRVFRRQFDRTPSDYR 104
PRK13500 PRK13500
HTH-type transcriptional activator RhaR;
211-340 1.61e-03

HTH-type transcriptional activator RhaR;


Pssm-ID: 184091 [Multi-domain]  Cd Length: 312  Bit Score: 39.70  E-value: 1.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862 211 LSQTLLTHDAATLKRYLTSCQSIVETlDSEHLLTNQIKTIFYQTAGSFpTIEQLALEFGCSSRTLRRELVSHNS-SYQAL 289
Cdd:PRK13500  177 MAELLFGQLVMLLNRHRYTSDSLPPT-SSETLLDKLITRLAASLKSPF-ALDKFCDEASCSERVLRQQFRQQTGmTINQY 254

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1699063862 290 LTEVRVELAKELLLGTSMSIDDIGERLGYSDPANFRRAFKGWLSKTPAQFR 340
Cdd:PRK13500  255 LRQVRVCHAQYLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWR 305
PRK15185 PRK15185
transcriptional regulator HilD; Provisional
 271-339 2.62e-03

transcriptional regulator HilD; Provisional


Pssm-ID: 185107 [Multi-domain]  Cd Length: 309  Bit Score: 39.21  E-value: 2.62e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1699063862 271 SSRTLRRELVSHNSSYQALLTEVRVELAKELLLGTSMSIDDIGERLGYSDPANFRRAFKGWLSKTPAQF 339
Cdd:PRK15185  235 STSTLKRKLAEEGTSFSDIYLSARMNQAAKLLRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTF 303
PRK09685 PRK09685
DNA-binding transcriptional activator FeaR; Provisional
 262-340 2.82e-03

DNA-binding transcriptional activator FeaR; Provisional


Pssm-ID: 236612 [Multi-domain]  Cd Length: 302  Bit Score: 38.86  E-value: 2.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862 262 EQLALEFGCSSRTLRRELVSHNSSYQALLTEVRVELAKELLLGTSM--SIDDIGERLGYSDPANFRRAFKGWLSKTPAQF 339
Cdd:PRK09685  218 EWIAGELGISVRSLYRLFAEQGLVVAQYIRNRRLDRCADDLRPAADdeKITSIAYKWGFSDSSHFSTAFKQRFGVSPGEY 297


                  .
gi 1699063862 340 R 340
Cdd:PRK09685  298 R 298
PRK15186 PRK15186
AraC family transcriptional regulator; Provisional
 265-344 6.90e-03

AraC family transcriptional regulator; Provisional


Pssm-ID: 185108 [Multi-domain]  Cd Length: 291  Bit Score: 37.74  E-value: 6.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1699063862 265 ALEFGCSsrTLRRELVSHNSSYQALLTEVRVELAKELLLGTSMSIDDIGERLGYSDPANFRRAFKGWLSKTPAQFRDGLS 344
Cdd:PRK15186  206 SLYMSCS--TLKRKLKQENTSFSEVYLNARMNKATKLLRNSEYNITRVAYMCGYDSASYFTCVFKKHFKTTPSEFLAFLS 283
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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