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Conserved domains on  [gi|1703417567|gb|TRB63611|]
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DUF1883 domain-containing protein [Rhizobium rhizogenes]

Protein Classification

DUF1883 domain-containing protein( domain architecture ID 10556751)

DUF1883 domain-containing protein similar to Agrobacterium fabrum Atu1913

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1883 pfam08980
Domain of unknown function (DUF1883); Predicted ligand-binding domain of the PPC-like ...
 6-91 4.88e-48

Domain of unknown function (DUF1883); Predicted ligand-binding domain of the PPC-like beta-sandwich fold. Observed in conserved gene neighbourhoods with diverse nucleotide-activated effector and related conflict systems, potentially recognizes invasive molecules and initiates system responses or directly triggers directly-associated effector domains.


:

Pssm-ID: 430353  Cd Length: 86  Bit Score: 148.31  E-value: 4.88e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703417567   6 FRYSHYDLKEQRAGTVIEITLSAIANVRLMNGSNFQRFTETLKHQFLGGVAKKSPIRLTIPETGHWHLVVDMEGHNGLAE 85
Cdd:pfam08980   1 MKFTHYDLGELRAGTIVEIILSAAANVRLMDSSNFQRFKNGRRHRYHGGLAKKSPIRITVPSSGHWHLTIDLAGHRGSVR 80


                  ....*.
gi 1703417567  86 SSVKMI 91
Cdd:pfam08980  81 SSVSVL 86
 
Name Accession Description Interval E-value
DUF1883 pfam08980
Domain of unknown function (DUF1883); Predicted ligand-binding domain of the PPC-like ...
 6-91 4.88e-48

Domain of unknown function (DUF1883); Predicted ligand-binding domain of the PPC-like beta-sandwich fold. Observed in conserved gene neighbourhoods with diverse nucleotide-activated effector and related conflict systems, potentially recognizes invasive molecules and initiates system responses or directly triggers directly-associated effector domains.


Pssm-ID: 430353  Cd Length: 86  Bit Score: 148.31  E-value: 4.88e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703417567   6 FRYSHYDLKEQRAGTVIEITLSAIANVRLMNGSNFQRFTETLKHQFLGGVAKKSPIRLTIPETGHWHLVVDMEGHNGLAE 85
Cdd:pfam08980   1 MKFTHYDLGELRAGTIVEIILSAAANVRLMDSSNFQRFKNGRRHRYHGGLAKKSPIRITVPSSGHWHLTIDLAGHRGSVR 80


                  ....*.
gi 1703417567  86 SSVKMI 91
Cdd:pfam08980  81 SSVSVL 86
 
Name Accession Description Interval E-value
DUF1883 pfam08980
Domain of unknown function (DUF1883); Predicted ligand-binding domain of the PPC-like ...
 6-91 4.88e-48

Domain of unknown function (DUF1883); Predicted ligand-binding domain of the PPC-like beta-sandwich fold. Observed in conserved gene neighbourhoods with diverse nucleotide-activated effector and related conflict systems, potentially recognizes invasive molecules and initiates system responses or directly triggers directly-associated effector domains.


Pssm-ID: 430353  Cd Length: 86  Bit Score: 148.31  E-value: 4.88e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1703417567   6 FRYSHYDLKEQRAGTVIEITLSAIANVRLMNGSNFQRFTETLKHQFLGGVAKKSPIRLTIPETGHWHLVVDMEGHNGLAE 85
Cdd:pfam08980   1 MKFTHYDLGELRAGTIVEIILSAAANVRLMDSSNFQRFKNGRRHRYHGGLAKKSPIRITVPSSGHWHLTIDLAGHRGSVR 80


                  ....*.
gi 1703417567  86 SSVKMI 91
Cdd:pfam08980  81 SSVSVL 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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