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Conserved domains on  [gi|1709390080|gb|TSI72359|]
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DUF1318 domain-containing protein [Escherichia coli]

Protein Classification

YdbL family protein( domain architecture ID 10007983)

YdbL family protein similar to Escherichia coli protein YdbL

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
YdbL COG3784
Uncharacterized conserved protein YdbL, DUF1318 family [Function unknown];
1-107 1.76e-45

Uncharacterized conserved protein YdbL, DUF1318 family [Function unknown];


:

Pssm-ID: 442998  Cd Length: 114  Bit Score: 142.35  E-value: 1.76e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1709390080   1 MKK----TLLLCAFLVGLVSSNVMALT--LDEARTQGRVGETFYGYLVALK-TDAETEKLVTDINAERKASYQQLAKQNN 73
Cdd:COG3784     1 MKKllaiLFLLLLLALLLLSAPAFALTpaLDEAKAQGLVGETPDGYLGVVKaDPAEAQALVAAINADRKAVYQEIAAKNG 80
                          90       100       110
                  ....*....|....*....|....*....|....
gi 1709390080  74 VSVDDIAKLAGQKLVARAKPGEYVQGINGKWVRK 107
Cdd:COG3784    81 ITLEEVAKLAGQKLIERAPPGEYVQGINGQWVKK 114
 
Name Accession Description Interval E-value
YdbL COG3784
Uncharacterized conserved protein YdbL, DUF1318 family [Function unknown];
1-107 1.76e-45

Uncharacterized conserved protein YdbL, DUF1318 family [Function unknown];


Pssm-ID: 442998  Cd Length: 114  Bit Score: 142.35  E-value: 1.76e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1709390080   1 MKK----TLLLCAFLVGLVSSNVMALT--LDEARTQGRVGETFYGYLVALK-TDAETEKLVTDINAERKASYQQLAKQNN 73
Cdd:COG3784     1 MKKllaiLFLLLLLALLLLSAPAFALTpaLDEAKAQGLVGETPDGYLGVVKaDPAEAQALVAAINADRKAVYQEIAAKNG 80
                          90       100       110
                  ....*....|....*....|....*....|....
gi 1709390080  74 VSVDDIAKLAGQKLVARAKPGEYVQGINGKWVRK 107
Cdd:COG3784    81 ITLEEVAKLAGQKLIERAPPGEYVQGINGQWVKK 114
DUF1318 pfam07027
Protein of unknown function (DUF1318); This family consists of several bacterial proteins of ...
17-107 1.47e-38

Protein of unknown function (DUF1318); This family consists of several bacterial proteins of around 100 residues in length and is often known as YdbL. The function of this family is unknown.


Pssm-ID: 462068  Cd Length: 92  Bit Score: 124.24  E-value: 1.47e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1709390080  17 SNVMALTLDEARTQGRVGETFYGYLVALK-TDAETEKLVTDINAERKASYQQLAKQNNVSVDDIAKLAGQKLVARAKPGE 95
Cdd:pfam07027   1 ASARALALDAAKAQGLVGEQPDGYLGVVKaAPAEVRALVAAINAKRRALYQEIAAKNGISVDEVAALAAQKLIERAPPGQ 80
                          90
                  ....*....|..
gi 1709390080  96 YVQGINGKWVRK 107
Cdd:pfam07027  81 YVQDADGQWVKK 92
 
Name Accession Description Interval E-value
YdbL COG3784
Uncharacterized conserved protein YdbL, DUF1318 family [Function unknown];
1-107 1.76e-45

Uncharacterized conserved protein YdbL, DUF1318 family [Function unknown];


Pssm-ID: 442998  Cd Length: 114  Bit Score: 142.35  E-value: 1.76e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1709390080   1 MKK----TLLLCAFLVGLVSSNVMALT--LDEARTQGRVGETFYGYLVALK-TDAETEKLVTDINAERKASYQQLAKQNN 73
Cdd:COG3784     1 MKKllaiLFLLLLLALLLLSAPAFALTpaLDEAKAQGLVGETPDGYLGVVKaDPAEAQALVAAINADRKAVYQEIAAKNG 80
                          90       100       110
                  ....*....|....*....|....*....|....
gi 1709390080  74 VSVDDIAKLAGQKLVARAKPGEYVQGINGKWVRK 107
Cdd:COG3784    81 ITLEEVAKLAGQKLIERAPPGEYVQGINGQWVKK 114
DUF1318 pfam07027
Protein of unknown function (DUF1318); This family consists of several bacterial proteins of ...
17-107 1.47e-38

Protein of unknown function (DUF1318); This family consists of several bacterial proteins of around 100 residues in length and is often known as YdbL. The function of this family is unknown.


Pssm-ID: 462068  Cd Length: 92  Bit Score: 124.24  E-value: 1.47e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1709390080  17 SNVMALTLDEARTQGRVGETFYGYLVALK-TDAETEKLVTDINAERKASYQQLAKQNNVSVDDIAKLAGQKLVARAKPGE 95
Cdd:pfam07027   1 ASARALALDAAKAQGLVGEQPDGYLGVVKaAPAEVRALVAAINAKRRALYQEIAAKNGISVDEVAALAAQKLIERAPPGQ 80
                          90
                  ....*....|..
gi 1709390080  96 YVQGINGKWVRK 107
Cdd:pfam07027  81 YVQDADGQWVKK 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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