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Conserved domains on  [gi|1710348059|gb|TVO82783|]
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hypothetical protein AYI76_13580 [Shewanella algae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GT29 super family cl45931
glycosyltransferase family 29; Glycosyltransferase family 29 members (also called ...
 34-164 1.31e-05

glycosyltransferase family 29; Glycosyltransferase family 29 members (also called sialyltransferases) are enzymes that transfer sialic acid to oligosaccharide, each having specificity for a certain sugar substrate.


The actual alignment was detected with superfamily member cd23963:

Pssm-ID: 480271  Cd Length: 274  Bit Score: 44.94  E-value: 1.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710348059  34 DDADCVIRFNLFDLGTGQT--GSRTD------VLFYTNTGGPARNGALKRKIRRLKNV-DSIeeVWFPRSPRSRLQNLAL 104
Cdd:cd23963    85 DSHDFVIRCNLPPIKGFEKdvGRKTNlttlnpSILKRRYNSLKKNRDRDKFLNRLKEYnGSI--LWYPKFSFKSSTNLLL 162

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710348059 105 KLsgqrkfmeygnQLVSRNHLFNQRILYLGDKFCDLLWQKltaLGDAGDASMPSSGMYAI 164
Cdd:cd23963   163 KA-----------ARALKKNGLNLTVVYSNPEHFLAVQKF---WKRRGLEKRPSTGLYLV 208
 
Name Accession Description Interval E-value
GT29_ST8SIA cd23963
alpha-N-acetylneuraminide alpha-2,8-sialyltransferase; ST8Sia family members are ...
 34-164 1.31e-05

alpha-N-acetylneuraminide alpha-2,8-sialyltransferase; ST8Sia family members are alpha-N-acetylneuraminidealpha-2,8-sialyltransferases that catalyze an alpha-2,8-linkage between sialic acid and the terminal sialic acid residues of glycochains, by transfering sialic acid from CMP-Sia. The family is subdivided into 3 classes of enzymes, depending on their catalytic activiy, the mono-STs (ST8Sia1, ST8Sia5 and ST8Sia6), the oligo-ST(ST8Sia3), and the poly-STs (ST8Sia2 and ST8Sia4). The ST8Sia family belongs to glycosyltransferase family 29 (GT29).


Pssm-ID: 467691  Cd Length: 274  Bit Score: 44.94  E-value: 1.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710348059  34 DDADCVIRFNLFDLGTGQT--GSRTD------VLFYTNTGGPARNGALKRKIRRLKNV-DSIeeVWFPRSPRSRLQNLAL 104
Cdd:cd23963    85 DSHDFVIRCNLPPIKGFEKdvGRKTNlttlnpSILKRRYNSLKKNRDRDKFLNRLKEYnGSI--LWYPKFSFKSSTNLLL 162

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710348059 105 KLsgqrkfmeygnQLVSRNHLFNQRILYLGDKFCDLLWQKltaLGDAGDASMPSSGMYAI 164
Cdd:cd23963   163 KA-----------ARALKKNGLNLTVVYSNPEHFLAVQKF---WKRRGLEKRPSTGLYLV 208
 
Name Accession Description Interval E-value
GT29_ST8SIA cd23963
alpha-N-acetylneuraminide alpha-2,8-sialyltransferase; ST8Sia family members are ...
 34-164 1.31e-05

alpha-N-acetylneuraminide alpha-2,8-sialyltransferase; ST8Sia family members are alpha-N-acetylneuraminidealpha-2,8-sialyltransferases that catalyze an alpha-2,8-linkage between sialic acid and the terminal sialic acid residues of glycochains, by transfering sialic acid from CMP-Sia. The family is subdivided into 3 classes of enzymes, depending on their catalytic activiy, the mono-STs (ST8Sia1, ST8Sia5 and ST8Sia6), the oligo-ST(ST8Sia3), and the poly-STs (ST8Sia2 and ST8Sia4). The ST8Sia family belongs to glycosyltransferase family 29 (GT29).


Pssm-ID: 467691  Cd Length: 274  Bit Score: 44.94  E-value: 1.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710348059  34 DDADCVIRFNLFDLGTGQT--GSRTD------VLFYTNTGGPARNGALKRKIRRLKNV-DSIeeVWFPRSPRSRLQNLAL 104
Cdd:cd23963    85 DSHDFVIRCNLPPIKGFEKdvGRKTNlttlnpSILKRRYNSLKKNRDRDKFLNRLKEYnGSI--LWYPKFSFKSSTNLLL 162

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710348059 105 KLsgqrkfmeygnQLVSRNHLFNQRILYLGDKFCDLLWQKltaLGDAGDASMPSSGMYAI 164
Cdd:cd23963   163 KA-----------ARALKKNGLNLTVVYSNPEHFLAVQKF---WKRRGLEKRPSTGLYLV 208
GT29 cd19952
glycosyltransferase family 29; Glycosyltransferase family 29 members (also called ...
 34-199 3.49e-04

glycosyltransferase family 29; Glycosyltransferase family 29 members (also called sialyltransferases) are enzymes that transfer sialic acid to oligosaccharide, each having specificity for a certain sugar substrate.


Pssm-ID: 467690  Cd Length: 193  Bit Score: 40.42  E-value: 3.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710348059  34 DDADCVIRFNLFDLGTGQ--TGSRTDV-LFYTNTGGPARNGALKRKIRRLKNVDSIeeVWFPRSPRSRLQNLALKLSGQR 110
Cdd:cd19952    20 DSHDAVFRFNQAPTKGFEkdVGSKTTFrVLNSKWAGFYLRGPRCGCHPLPLEEEVV--LILSRAAAADFKRLKRRKKRHD 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710348059 111 KfmeygnqlvsrnhlfnqRILYLGDKFCDLL------WQKLTALGDAGDaSMPSSGMYAI-------EHV-----LNSRR 172
Cdd:cd19952    98 N-----------------AVLLLTDPAPDLLsyvrkrLEKLGLKSFFGG-NAPSSGLLAVllalqlcDSVdlygfGVDSG 159

                         170       180       190
                  ....*....|....*....|....*....|
gi 1710348059 173 FRNATVY---TLGFSHQGSGPHPWQLEAEL 199
Cdd:cd19952   160 HAPKVPYhyyDLVEAEEGTAVHSFDLEAEL 189
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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