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Conserved domains on  [gi|1710873141|gb|TVQ37018|]
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ABC transporter permease subunit [Spirochaetaceae bacterium]

Protein Classification

ABC transporter permease( domain architecture ID 10003093)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0055085|GO:0140359|GO:0042626|GO:0016020
PubMed:  31571164|27273632|26517919|18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-267 7.21e-34

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


:

Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 124.10  E-value: 7.21e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141   1 MSSQRVRTASAFLPLLPFVLFIAAGIGYTVIqsMGAWITVRPGDVYP--------AGYGVILQSAWFYRSLLYSLWIAAV 72
Cdd:COG1176     1 MSAALRRRLRPLLLLLPALLWLLLFFVLPLL--LLLVYSFTTRDPYGgvvpgftlENYARLFTDPLYLKVLLRTLWIALL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  73 STALSVVLGTVLALLLRGLPQQLYPFALV-YKIPLILPHVVIGLIVLVGFGRGGVLGRLAAAPG-----------STALI 140
Cdd:COG1176    79 TTLICLLLGYPIAYFLARAPPRWRNLLLLlVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGlideplrllytEFAVV 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 141 SAYVFKSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFDLPFLLGASRPA 220
Cdd:COG1176   159 IGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVL 238

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1710873141 221 MLAIDIYNryWYRDLPARPAAMASLVVMFLFSTLFVALYFRLVRRQK 267
Cdd:COG1176   239 MIGNLIYQ--QFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRR 283
 
Name Accession Description Interval E-value
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-267 7.21e-34

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 124.10  E-value: 7.21e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141   1 MSSQRVRTASAFLPLLPFVLFIAAGIGYTVIqsMGAWITVRPGDVYP--------AGYGVILQSAWFYRSLLYSLWIAAV 72
Cdd:COG1176     1 MSAALRRRLRPLLLLLPALLWLLLFFVLPLL--LLLVYSFTTRDPYGgvvpgftlENYARLFTDPLYLKVLLRTLWIALL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  73 STALSVVLGTVLALLLRGLPQQLYPFALV-YKIPLILPHVVIGLIVLVGFGRGGVLGRLAAAPG-----------STALI 140
Cdd:COG1176    79 TTLICLLLGYPIAYFLARAPPRWRNLLLLlVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGlideplrllytEFAVV 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 141 SAYVFKSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFDLPFLLGASRPA 220
Cdd:COG1176   159 IGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVL 238

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1710873141 221 MLAIDIYNryWYRDLPARPAAMASLVVMFLFSTLFVALYFRLVRRQK 267
Cdd:COG1176   239 MIGNLIYQ--QFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRR 283
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 66-265 3.51e-16

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 74.97  E-value: 3.51e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  66 SLWIAAVSTALSVVLGTVLALLLRGLPQQLYPFALV-YKIPLILPHVVIGLIVLVGFGRGGVLGRLAAAPG------STA 138
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVlVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELFGislvftFTG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 139 LISAYVFKSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFDLPFLLGASR 218
Cdd:TIGR02141  83 AVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAGNI 162

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1710873141 219 PA---MLAIDIYNrywYRDLPARPAAMASLvVMFLFSTLFVALYFRLVRR 265
Cdd:TIGR02141 163 PGetqTIPLAIYD---AVESDYELAHQLSL-VLLAISLIVLLLVELLNKR 208
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 63-252 4.24e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 63.45  E-value: 4.24e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  63 LLYSLWIAAVSTALSVVLGTVLALLLRGLPQQLYPFALVY-KIPLILPHVVIGLIVLVGFGRGGVLGRLAAaPGSTALIS 141
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIiDLLLSLPSLVLGLLLVLLFGVLLGWGILPG-LGLPALIL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 142 AYVFkSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFDLPFLLGASRPAM 221
Cdd:cd06261    80 ALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPG 158

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1710873141 222 LAIDIYNRYWYRDLPARPAAMASLVVMFLFS 252
Cdd:cd06261   159 PGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 5-272 4.00e-11

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 61.94  E-value: 4.00e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141   5 RVRTASAFLPLLPFVLFIAAGIGY----TVIQSMGAwitvrPGDVYPAGYGVILQSAWFYRSLLYSLWIAAVSTALSVVL 80
Cdd:PRK15050   18 RRRRLRPLLWLLLPLLVLAPLVVYplvrVVLQSLTG-----EHGLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVL 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  81 GTVLALLLRGLPqqlYPFALV----YKIPLILPHVVIGLIVLVGFGRGGVLGRLAAAPGSTAL------------ISAYV 144
Cdd:PRK15050   93 GVLLALVLAFVP---FPGASLvgrfIDTFVAFPSFLITLAFTFLYGSAGSVNIALQRLFGLEAppldflyspggvILAEI 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 145 FKSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFDLPFLLGASRPAMLAI 224
Cdd:PRK15050  170 TFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPV 249

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1710873141 225 DIYNRYWYR-DLparPAAMASLVVMFLFSTLFVALYFRLVRRQKHGTRH 272
Cdd:PRK15050  250 LIYSKAIVDfDY---PTACAIAVVNLALSLGLYALYRRVNRRAGGGSRD 295
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 77-268 2.71e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 55.38  E-value: 2.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  77 SVVLGTVLALLLRGLPQQLypFALVYKIPLILPHVVIGLIVLVGFGRGgvlgrlAAAPGSTALISAYVFKSASFVTLLVY 156
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRL--LRPLIDLLQALPSFVLAILLVVIAILS------ILGHGILPAIILALLGWAGYARLIRR 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 157 AVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFDLPFLLGASRPamLAIDIYNRYWYRDLP 236
Cdd:pfam00528  73 AALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPG--LGLLLIEAILGYDYP 150

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1710873141 237 ARPAAMASLVVMF-LFSTLFVALYFRLVRRQKH 268
Cdd:pfam00528 151 EIQGPVLAAALILlLLNLLVDILQRLLDPRVRK 183
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 62-185 1.98e-05

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 44.07  E-value: 1.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  62 SLLYSLWIAAVSTALSVVLGTVLALllRGLPQQLYPFALVYkIPLILPHVVIGLIVLVGFGRGGVLGRLAAAPGSTALIS 141
Cdd:NF038017    1 SLRVSGTATLIAALIGIPLGALLAL--RRFPGRRLVISLLN-TLMGLPPVVVGLIVYLLLSRSGPLGFLGLLYTPTAMII 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1710873141 142 AYVFKSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLL 185
Cdd:NF038017   78 AQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLL 121
 
Name Accession Description Interval E-value
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-267 7.21e-34

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 124.10  E-value: 7.21e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141   1 MSSQRVRTASAFLPLLPFVLFIAAGIGYTVIqsMGAWITVRPGDVYP--------AGYGVILQSAWFYRSLLYSLWIAAV 72
Cdd:COG1176     1 MSAALRRRLRPLLLLLPALLWLLLFFVLPLL--LLLVYSFTTRDPYGgvvpgftlENYARLFTDPLYLKVLLRTLWIALL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  73 STALSVVLGTVLALLLRGLPQQLYPFALV-YKIPLILPHVVIGLIVLVGFGRGGVLGRLAAAPG-----------STALI 140
Cdd:COG1176    79 TTLICLLLGYPIAYFLARAPPRWRNLLLLlVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGlideplrllytEFAVV 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 141 SAYVFKSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFDLPFLLGASRPA 220
Cdd:COG1176   159 IGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVL 238

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1710873141 221 MLAIDIYNryWYRDLPARPAAMASLVVMFLFSTLFVALYFRLVRRQK 267
Cdd:COG1176   239 MIGNLIYQ--QFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRR 283
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 3-267 6.94e-30

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 112.90  E-value: 6.94e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141   3 SQRVRTASAFLPLLPFVLFIAAGIGYTVIQSMGA--WITVRPGDVYPAGYGVILQSAWFYRSLLYSLWIAAVSTALSVVL 80
Cdd:COG1177     1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDswFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  81 GTVLALLL--RGLPQQLYPFALVYkIPLILPHVVIGLIVLVGFGRGGVLGRLaaapgsTALISAYVFKSASFVTLLVYAV 158
Cdd:COG1177    81 GTPAALALarYRFRGRRLLLALLL-LPLVVPGIVLGVALLLLFSALGLSGGL------WGLILAHVVFTLPFVVLVVLAR 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 159 LRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFDLPFLLGASRPAMLAIDIYNRYwyrDLPAR 238
Cdd:COG1177   154 LQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMI---RRGIS 230

                         250       260
                  ....*....|....*....|....*....
gi 1710873141 239 PAAMASLVVMFLFSTLFVALYFRLVRRQK 267
Cdd:COG1177   231 PEINALSTLLILLSLLLLLLAERLRRRGE 259
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
2-267 7.92e-27

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 105.60  E-value: 7.92e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141   2 SSQRVRTASAFLPLLPFVLFIAAG----IGYTVIQSMGAWITVRPGDVYpAG---YGVILQSAWFYRSLLYSLWIAAVST 74
Cdd:COG1175    11 RRRRRRRLAAYLFLLPALLLLLVFvlypLLYTLYLSFTDWNLLGPPPEF-VGldnYARLFTDPRFWNALGNTLLFTVVSV 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  75 ALSVVLGTVLALLLRGLPQQLYPFALVYKIPLILPHVVIGLIVLVGF-GRGGVLGRLAAAPG----------STALIS-- 141
Cdd:COG1175    90 PLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFnPDYGLLNALLGALGlepinwlgdpSLALPAvi 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 142 -AYVFKSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFDLPFLLGASRPA 220
Cdd:COG1175   170 iVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGGGPG 249

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1710873141 221 ----MLAIDIYNRYWYRDLPARPAAMAslVVMFLFSTLFVALYFRLVRRQK 267
Cdd:COG1175   250 nsttTLVLYIYQTAFQQFDFGYASAIA--VVLFLIILVLTLLQLRLLRRRE 298
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
2-271 8.07e-25

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 102.93  E-value: 8.07e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141   2 SSQRVRTASAFLPLLPFVLFIAAGIGYTVIQSMGawitvrpgdVYPAGYGVILQSAWFYRSLLYSLWIAAVSTALSVVLG 81
Cdd:COG1178     4 RPRRRPRLLLLLLALLLALLVLLPLLALLLRAFT---------DGLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLG 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  82 TVLALLL-------RGLpqqlypFALVYKIPLILPHVVIGLIVLVGFGRGGVLGRLAAAPGSTALISAY---------VF 145
Cdd:COG1178    75 VPLAWLLartdfpgRRL------LRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALFGLEPPDIYglggiilvlVL 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 146 KSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFDLPFLLGASRPaMLAID 225
Cdd:COG1178   149 FNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYT-TLTTA 227

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1710873141 226 IYNRYWYRDLPARPAAMAslVVMFLFSTLFVALYFRLVRRQKHGTR 271
Cdd:COG1178   228 IYQAWLGDFDLGAAAALA--LVLLLLVLLLLLLERRLRRRRRYATV 271
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
5-265 3.38e-18

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 83.67  E-value: 3.38e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141   5 RVRTASAFLPLLPFVLFIAAGIGYTVIqsmGAWITVRPGDVYPAGYGVILQSAWFYRSLLYSLWIAAVSTALSVVLGTVL 84
Cdd:COG1178   285 RWRWLALALCLLLVLLGLLLPLLALLL---WSLTKALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLL 361

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  85 ALLLRGLPQQLYPFA-LVYKIPLILPHVVIGLIVLVGFGRGGVLGRLAAAPgstALISAYVFKSASFVTLLVYAVLRSFD 163
Cdd:COG1178   362 AYLVRRRRGRLARLLdRLAMLPYAVPGIVLGLGLLLLFNRPLPLLLYGTLA---ILVLAYVVRFLPFALRSLEAALAQID 438

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 164 ARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFDLPFLLGASRPAMLAIDIYnRYWYRDLPARPAAMA 243
Cdd:COG1178   439 PSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLIY-QLASSGRYGEAAALA 517

                         250       260
                  ....*....|....*....|..
gi 1710873141 244 slVVMFLFSTLFVALYFRLVRR 265
Cdd:COG1178   518 --LLLVLVSLLPVLLLERLLGR 537
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 66-265 3.51e-16

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 74.97  E-value: 3.51e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  66 SLWIAAVSTALSVVLGTVLALLLRGLPQQLYPFALV-YKIPLILPHVVIGLIVLVGFGRGGVLGRLAAAPG------STA 138
Cdd:TIGR02141   3 SLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVlVTLPLVLPPTVLGFYLLIAFGPNGPIGKLLELFGislvftFTG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 139 LISAYVFKSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFDLPFLLGASR 218
Cdd:TIGR02141  83 AVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFAGNI 162

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1710873141 219 PA---MLAIDIYNrywYRDLPARPAAMASLvVMFLFSTLFVALYFRLVRR 265
Cdd:TIGR02141 163 PGetqTIPLAIYD---AVESDYELAHQLSL-VLLAISLIVLLLVELLNKR 208
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 63-252 4.24e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 63.45  E-value: 4.24e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  63 LLYSLWIAAVSTALSVVLGTVLALLLRGLPQQLYPFALVY-KIPLILPHVVIGLIVLVGFGRGGVLGRLAAaPGSTALIS 141
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIiDLLLSLPSLVLGLLLVLLFGVLLGWGILPG-LGLPALIL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 142 AYVFkSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFDLPFLLGASRPAM 221
Cdd:cd06261    80 ALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPG 158

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1710873141 222 LAIDIYNRYWYRDLPARPAAMASLVVMFLFS 252
Cdd:cd06261   159 PGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 5-272 4.00e-11

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 61.94  E-value: 4.00e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141   5 RVRTASAFLPLLPFVLFIAAGIGY----TVIQSMGAwitvrPGDVYPAGYGVILQSAWFYRSLLYSLWIAAVSTALSVVL 80
Cdd:PRK15050   18 RRRRLRPLLWLLLPLLVLAPLVVYplvrVVLQSLTG-----EHGLGLATYRAVLGSPDFRGALLTTLQIAFASTAGCLVL 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  81 GTVLALLLRGLPqqlYPFALV----YKIPLILPHVVIGLIVLVGFGRGGVLGRLAAAPGSTAL------------ISAYV 144
Cdd:PRK15050   93 GVLLALVLAFVP---FPGASLvgrfIDTFVAFPSFLITLAFTFLYGSAGSVNIALQRLFGLEAppldflyspggvILAEI 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 145 FKSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFDLPFLLGASRPAMLAI 224
Cdd:PRK15050  170 TFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEFGIVLFTGAKDVVTLPV 249

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1710873141 225 DIYNRYWYR-DLparPAAMASLVVMFLFSTLFVALYFRLVRRQKHGTRH 272
Cdd:PRK15050  250 LIYSKAIVDfDY---PTACAIAVVNLALSLGLYALYRRVNRRAGGGSRD 295
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 53-268 1.77e-09

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 56.92  E-value: 1.77e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  53 ILQSAWfyrsllYSLWIAAVSTALSVVLGTVLALLLR--GLPQQLYPFALVYkIPLILPHVVIGLIVLVGFGRGGVlgrl 130
Cdd:PRK09500   55 LLQAAQ------HSLTMAVFSATFATLIGSLTAVALYryRFRGKKFVSGMLF-VVMMSPDIVMAISLLVLFMLLGI---- 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 131 aaAPGSTALISAYVFKSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFDL 210
Cdd:PRK09500  124 --QLGFWSLLFAHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVVV 201

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1710873141 211 PFLLGASRPAMLAIDIYNRYwyrDLPARPAAMASLVVMFLFSTLFVALYFRLVRRQKH 268
Cdd:PRK09500  202 SSFVTGPSYEILPLKIYSMV---KVGVSPEVNALATILLVLSLVLVILSQLLARDKTK 256
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 77-268 2.71e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 55.38  E-value: 2.71e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  77 SVVLGTVLALLLRGLPQQLypFALVYKIPLILPHVVIGLIVLVGFGRGgvlgrlAAAPGSTALISAYVFKSASFVTLLVY 156
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRL--LRPLIDLLQALPSFVLAILLVVIAILS------ILGHGILPAIILALLGWAGYARLIRR 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 157 AVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFDLPFLLGASRPamLAIDIYNRYWYRDLP 236
Cdd:pfam00528  73 AALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPG--LGLLLIEAILGYDYP 150

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1710873141 237 ARPAAMASLVVMF-LFSTLFVALYFRLVRRQKH 268
Cdd:pfam00528 151 EIQGPVLAAALILlLLNLLVDILQRLLDPRVRK 183
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 5-227 1.33e-08

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 55.07  E-value: 1.33e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141   5 RVRTASAFLPLLPFVLFIAAGIGYTVIQSmgawitVRPGDVYPAGYGV---ILQSAWFYRSLLYSLWIAAVSTALSVVLG 81
Cdd:TIGR03262   1 LIARLLLAGMILALLLFLLLPLLALLTKS------VYDSDGDFIGLANfaeYFATPGLLQSLGNSLTVSAIVTAIVVPLA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  82 TVLAL-LLRGLPQQLYPFALVYKIPLILPHVVIGLIVLVGFGRGGVL-GRLAAAP--GSTALISAYVFKSASFVTLLVYA 157
Cdd:TIGR03262  75 FAFAYaLTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLkGLLGGFSiyGFWGIVIGEVFYTFPHALMILVT 154

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 158 VLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFDLPFLLGASRPaMLAIDIY 227
Cdd:TIGR03262 155 ALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYN-VLATDIY 223
modB PRK09421
molybdate ABC transporter permease subunit;
60-208 2.81e-08

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 53.00  E-value: 2.81e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  60 YRSLLYSLWIAAVSTALSVVLGTVLALLL-RGlpqQLYPFALVYKI---PLILPHVVIGLIVLVGFGRGGVLGR-LAAAP 134
Cdd:PRK09421    8 WQAVLLSLKVSSVAVLFSLPFGILVAWLLaRC---RFPGKSLLDSLlhlPLVLPPVVTGYLLLISMGRRGFIGQwLYEWF 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 135 GST--------ALISAYVfksaSFvTLLVYAVLRSFDA--RQLE-TARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLF 203
Cdd:PRK09421   85 GISfafswrgaALAAAVM----AF-PLMVRAIRLSLEAvdRKLEqAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFAR 159


                  ....*
gi 1710873141 204 SFGAF 208
Cdd:PRK09421  160 SLGEF 164
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 2-187 8.96e-08

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 51.69  E-value: 8.96e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141   2 SSQRVRTASAFLPLLPFVLFIAAGIGYTVIQSMGAWITVRPGDVYPAGYGvILQSAWFYRSLLYSLWIAAVSTALSVVLG 81
Cdd:COG0600     3 TSTRRRLRRLLLPLLSLALLLALWELAARLGLVPPFLLPSPSAVLAALVE-LLASGELWEHLLASLLRVLLGFALAALLG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  82 TVLALLL---RGLPQQLYPFALVYKIpliLPHVVIGLIVLVGFGRGgvlgrlaaaPGSTALISAYVfksASFVTLL-VYA 157
Cdd:COG0600    82 VPLGLLLglsRLLRRLLDPLLVFLRP---IPPLALAPLLILWFGIG---------EASKIFVIFLG---AFFPILLnTAA 146

                         170       180       190
                  ....*....|....*....|....*....|
gi 1710873141 158 VLRSFDARQLETARMLGAGAWQSFRHLLLP 187
Cdd:COG0600   147 GVRSVDPELLELARSLGASRWQILRKVVLP 176
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 63-236 1.19e-07

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 51.61  E-value: 1.19e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  63 LLYSLWIAAVSTALSVVLGTVLALLLRGLPQQLYPFALVYkipLILPHVVIGLIVLVG----FGRGGVLGRLAAAPG--- 135
Cdd:PRK09497   65 LLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFL---LIVPFWTNSLIRIYGlkifLSTKGYLNEFLLWLGvid 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 136 --------STALISAYVFKSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGA 207
Cdd:PRK09497  142 tpirimftESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGM 221

                         170       180       190
                  ....*....|....*....|....*....|
gi 1710873141 208 FDLPFLLGASRPAMLAIDIYNRYW-YRDLP 236
Cdd:PRK09497  222 FYVSDLLGGAKNLLIGNVIKSQFLnIRDWP 251
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 42-214 5.53e-07

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 49.71  E-value: 5.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  42 PGDVYPAGYGVILQSAWFYRSLLYSLWIAAVSTALSVVLGTVLAlllrglpqqlYPFA-----------LVYKIPLILPH 110
Cdd:COG0395    55 PSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAA----------YALArfrfrgrkllfLLILATLMIPG 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 111 VVIGLIVLVGFGRGGVLGRLAAapgstaLISAYVFKSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVIG 190
Cdd:COG0395   125 QVLLIPLYLLFRQLGLLNTYWG------LILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSK 198

                         170       180
                  ....*....|....*....|....
gi 1710873141 191 PPAATAGVIVFLFSFGAFDLPFLL 214
Cdd:COG0395   199 PALATVAIFTFIGAWNDFLWPLIL 222
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 2-271 4.06e-06

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 47.11  E-value: 4.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141   2 SSQRVRTASAFLPLLPFVLFIAAGIGYTVIQSMGAWITVRPGDVYPAGYGVILQSawFYR-SLLYSLWIAAVSTALSVVL 80
Cdd:COG4132     5 SRRRRRKWLAWLGLLPFFLFVLLFLLLPTVWVVIGAFQDDDGGFTLANYAELTSP--FYLqAFWNSIWLSLASALIGAVI 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  81 GTVLA-LLLRGLPQQLYPFALVYK--------IPLILPHVVI----GLIVLVGFGRGGVLGRLAAAPGSTALISAYVFKS 147
Cdd:COG4132    83 GLLLAyALRRGGPGWLRRAVLAFSgvasnfagVPLAFAFIATlgrnGLVTLLLKQLGIDLYDGFNLYSFWGLILVYLYFQ 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 148 ASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFDLPFLLGASRPAMLAIDIY 227
Cdd:COG4132   163 IPLMVLLLYPALDGLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTFLLLFANAFGAYATAYALTGGNYNLVPIRIG 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 1710873141 228 NrYWYRDLPARP---AAMAslVVMFLFSTLFVALYFRLVRRQKHGTR 271
Cdd:COG4132   243 A-LISGDVLLDPnlgAALA--LGMIVIMALVMALYQWLQRRSRRWLR 286
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 55-270 5.46e-06

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 47.22  E-value: 5.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  55 QSAWFYRSLLYSLWIAAVSTALSVVLGTVLA--LLLRGLPQQLYPFALVyKIPLILPHVVIGLIVLVGFGRGGVLGRLAA 132
Cdd:TIGR01253  41 QDDYLQHLILFSFGQAFLSALLSIFFAIFLAraLFRKPFLGKKALLKLC-ALTFILPALVAIFGIIGIYGRQGWLATLAN 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 133 APGS---------TALISAYVFKSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLF 203
Cdd:TIGR01253 120 LFGLewqfhiyglQGILIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFML 199

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1710873141 204 SFGAFDLPFLLGASRPA-MLAIDIYNRYWYRDLPARPAAMASLvvMFLFSTLFVALYFRLVRRQKHGT 270
Cdd:TIGR01253 200 CFASFATVLSLGGGPQAtTIELAIYQAILFDFDLAKAALFALL--QFVCCLGLFLLSQRFSKAIANGL 265
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 50-204 9.98e-06

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 46.00  E-value: 9.98e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  50 YGVILQSAWFYRSLLYSLWIAAVSTALSVVLGTVLALLLR--GLPQQLYPFALVYKIPLILPHVVIGLIVLVGFGRGGVL 127
Cdd:PRK10592   52 YGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVrfGRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALAHA 131

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1710873141 128 GRLAAAPGSTALISAYVFKSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFS 204
Cdd:PRK10592  132 IGWPADRGMLTIWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLS 208
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 63-218 1.24e-05

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 46.02  E-value: 1.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  63 LLYSLWIAAVSTALSVVLgtVLALL----LRGLPQQLYPFALVYkIPLILPHVVIGlivlvgFGRGGVLGRLAAAPGSTA 138
Cdd:COG4135   358 LGNTLLLALASALIALVL--VLACLeaeaRRGRRPGRRALWLLY-LPLLVPQIAFL------FGLQVLLLRLGLDGTWLA 428

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 139 LISAYVFksasFVTLLVYAVL----RSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIVFLFSFGAFdLPFLL 214
Cdd:COG4135   429 VIWAHLV----FVLPYVFLSLagpwRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGFAVSVAQY-LPTLL 503


                  ....*
gi 1710873141 215 -GASR 218
Cdd:COG4135   504 iGAGR 508
cysT CHL00187
sulfate transport protein; Provisional
 104-208 1.45e-05

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 45.01  E-value: 1.45e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 104 IPLILPHVVIGLIVLVGFGRGGVLGRLAAAPGSTALIS------AYVFKSASFVTLLVYAVLRSFDARQLETARMLGAGA 177
Cdd:CHL00187   99 LPFALPTSVAGLTLATVYGDNGWIGHLLSHLGIQIVFTklgvllAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASP 178

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1710873141 178 WQSFRHLLLPVIGPPAATAGVIVFLFSFGAF 208
Cdd:CHL00187  179 WQTFWKVIFPPLIPALLTGLALTFSRAIGEY 209
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 62-185 1.98e-05

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 44.07  E-value: 1.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  62 SLLYSLWIAAVSTALSVVLGTVLALllRGLPQQLYPFALVYkIPLILPHVVIGLIVLVGFGRGGVLGRLAAAPGSTALIS 141
Cdd:NF038017    1 SLRVSGTATLIAALIGIPLGALLAL--RRFPGRRLVISLLN-TLMGLPPVVVGLIVYLLLSRSGPLGFLGLLYTPTAMII 77

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1710873141 142 AYVFKSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLL 185
Cdd:NF038017   78 AQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLL 121
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 53-215 8.38e-05

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 43.67  E-value: 8.38e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  53 ILQSAWFYRSLLYSLWIAAVSTALSVVLGTVLAlllRGLPQQLYP-FALVYKI---PLILPHVVIGLIVLVGFGRGGVLG 128
Cdd:PRK09433   36 VWQDSYLWHVLRFSFWQAFLSALLSVLPAIPLA---RALYRRRFPgRGLLLRLcamTLVLPVLVAVFGLLSVYGRSGWLA 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 129 RLAAAPGSTALISAY---------VFKSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVI 199
Cdd:PRK09433  113 QLLQALGLEWPFSIYglqgillahVFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWPYLRRQLPPVAAL 192

                         170
                  ....*....|....*.
gi 1710873141 200 VFLFSFGAFDLPFLLG 215
Cdd:PRK09433  193 IFMLCFTSFATVLTLG 208
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 58-187 1.11e-04

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 42.37  E-value: 1.11e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  58 WFYRSLLYSLWIAAVSTALSVVLGTVLALLLRGLPQQLYPFALVY-----KIPLILphvvigLIVLVGFGRGGVLGRLaa 132
Cdd:COG0765    14 LLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYveffrGTPLLV------QLFFIYFGLPLLGIDL-- 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1710873141 133 aPGSTALISAYVFKSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLP 187
Cdd:COG0765    86 -SPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILP 139
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
104-254 1.26e-04

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 42.43  E-value: 1.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 104 IPLILPHVVIGLIVLVGFGRGGVLGRLAAAPGSTALIS------AYVFKSASFVTLLVYAVLRSFDARQLETARMLGAGA 177
Cdd:PRK10971  102 LPFALPTAVAGLTLASLFSVNGWYGEWLAKFDIKVTYTwlgiavAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATR 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 178 WQSFRHLLLPVIGPPAATAGVIVFLFSFGAFD-LPFLLG--ASRPAMLAIDIYNRYWYRDLPARPAA-----MASLVVMF 249
Cdd:PRK10971  182 WQSFRKVVLPELSPALLAGVALSFTRSLGEFGaVIFIAGniAWKTEVTSLMIFVRLQEFDYPAASAIasvilAASLLLLF 261


                  ....*
gi 1710873141 250 LFSTL 254
Cdd:PRK10971  262 SINTL 266
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 54-208 2.07e-04

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 42.51  E-value: 2.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  54 LQSAWFYRSLLYSLWIAAVSTALSVVLGTVLALLLRGLPQQLYPFA-----LVYKIPLILPHVVI--GLIVLVgfgrGGV 126
Cdd:PRK09433  312 LAQPALWQALWTSLRIALAAALLAVVLTMMLLWSSRELRLRQRKLAaqaleLSGMLILAMPGIVLatGLFLLL----RNT 387

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141 127 LGRLAAAPGSTALISAyvfksasfVTLLVYAV------LRSFDARQLETARMLGAGAWQSFRHLLLPVIGPPAATAGVIV 200
Cdd:PRK09433  388 TDLPASALGIVILTNA--------LMALPYALrvleppMRDIAARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFAFA 459


                  ....*...
gi 1710873141 201 FLFSFGAF 208
Cdd:PRK09433  460 CALSLGDF 467
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
63-189 5.20e-03

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 37.81  E-value: 5.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1710873141  63 LLYSLW----IAAVSTALSVVLGTVLALLLR--GLPQQLYPFALVyKIPLILPHVVIGLIVLVGFGRGGVLGRLAAAPGS 136
Cdd:PRK11602   62 MLHAIWltvlIALIAVPVNLVFGILLAWLVTrfNFPGRQLLLTLL-DIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNL 140

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1710873141 137 TALIS------AYVFKSASFVTLLVYAVLRSFDARQLETARMLGAGAWQSFRHLLLPVI 189
Cdd:PRK11602  141 QLMFSwpgmvlVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNI 199
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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