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Conserved domains on  [gi|1711024975|gb|TVR77669|]
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hypothetical protein EA409_11525 [Saprospirales bacterium]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 708416)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
162-436 1.07e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.47  E-value: 1.07e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 162 YEIHNILVANERDPIFEDEEELNNHLYILGITGLQAGQRQEAEGFLSMLYEKRFDEPRVYTTLFELyvdEDEEKALAFLE 241
Cdd:COG3914    26 LALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQAL---GRYEEALALYR 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 242 AGKEVDAENIDILYAEINFYIRKQDFQQLQEKLTLAIEKDPENHSLYNVLGNVFMSL--MTEAMEegdsalaeeyfatsr 319
Cdd:COG3914   103 RALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLgrLEEAIA--------------- 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 320 nYLEQAIEIEPNFFEPYYTIGSMYFNRGavitqrmnelgmsredqrkyeeynkqaneYFDKALPFFQKSESLEPNDVTTL 399
Cdd:COG3914   168 -ALRRALELDPDNAEALNNLGNALQDLG-----------------------------RLEEAIAAYRRALELDPDNADAH 217
                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1711024975 400 IALREVYARMQDFDMVQEFAERLSKLEAGEEIESSYF 436
Cdd:COG3914   218 SNLLFALRQACDWEVYDRFEELLAALARGPSELSPFA 254
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
162-436 1.07e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.47  E-value: 1.07e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 162 YEIHNILVANERDPIFEDEEELNNHLYILGITGLQAGQRQEAEGFLSMLYEKRFDEPRVYTTLFELyvdEDEEKALAFLE 241
Cdd:COG3914    26 LALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQAL---GRYEEALALYR 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 242 AGKEVDAENIDILYAEINFYIRKQDFQQLQEKLTLAIEKDPENHSLYNVLGNVFMSL--MTEAMEegdsalaeeyfatsr 319
Cdd:COG3914   103 RALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLgrLEEAIA--------------- 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 320 nYLEQAIEIEPNFFEPYYTIGSMYFNRGavitqrmnelgmsredqrkyeeynkqaneYFDKALPFFQKSESLEPNDVTTL 399
Cdd:COG3914   168 -ALRRALELDPDNAEALNNLGNALQDLG-----------------------------RLEEAIAAYRRALELDPDNADAH 217
                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1711024975 400 IALREVYARMQDFDMVQEFAERLSKLEAGEEIESSYF 436
Cdd:COG3914   218 SNLLFALRQACDWEVYDRFEELLAALARGPSELSPFA 254
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
45-430 1.24e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.22  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975  45 NQENLNEAKNLIAEALSTDEGRAEfrAWQTQGEIHNASLTYQLTLIQLEQQERFsDPNEamIASRAFRNALDLAERRHES 124
Cdd:TIGR02917 171 AENRFDEARALIDEVLTADPGNVD--ALLLKGDLLLSLGNIELALAAYRKAIAL-RPNN--IAVLLALATILIEAGEFEE 245
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 125 RDA-LDGLTEAA-GHLGiignfyitsAEYAQSFLPLKEvyeiHNILVANERdpiFEDEEELNNH----LYILGITGLQAG 198
Cdd:TIGR02917 246 AEKhADALLKKApNSPL---------AHYLKALVDFQK----KNYEDARET---LQDALKSAPEylpaLLLAGASEYQLG 309
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 199 QRQEAEGFLSMlYEKRF-DEPRVYTTLFELYVDE-DEEKALAFLEAGKEVDAENIDILYAEINFYIRKQDFQQLQEKLTL 276
Cdd:TIGR02917 310 NLEQAYQYLNQ-ILKYApNSHQARRLLASIQLRLgRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAK 388
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 277 AIEKDPENHSLYNVLGNVFMSL---------------MTEAMEEGDSALAEEY-----FATSRNYLEQAIEIEPNFFEPY 336
Cdd:TIGR02917 389 ATELDPENAAARTQLGISKLSQgdpseaiadletaaqLDPELGRADLLLILSYlrsgqFDKALAAAKKLEKKQPDNASLH 468
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 337 YTIGSMYFNRGAVITQRMNeLGMSRE-DQRKYEEYNKQAN-----EYFDKALPFFQKSESLEPNDVTTLIALREVYARMQ 410
Cdd:TIGR02917 469 NLLGAIYLGKGDLAKAREA-FEKALSiEPDFFPAAANLARidiqeGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547
                         410       420
                  ....*....|....*....|
gi 1711024975 411 DFDMVQEFAERLSKLEAGEE 430
Cdd:TIGR02917 548 NEEEAVAWLEKAAELNPQEI 567
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
162-436 1.07e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.47  E-value: 1.07e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 162 YEIHNILVANERDPIFEDEEELNNHLYILGITGLQAGQRQEAEGFLSMLYEKRFDEPRVYTTLFELyvdEDEEKALAFLE 241
Cdd:COG3914    26 LALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQAL---GRYEEALALYR 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 242 AGKEVDAENIDILYAEINFYIRKQDFQQLQEKLTLAIEKDPENHSLYNVLGNVFMSL--MTEAMEegdsalaeeyfatsr 319
Cdd:COG3914   103 RALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLgrLEEAIA--------------- 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 320 nYLEQAIEIEPNFFEPYYTIGSMYFNRGavitqrmnelgmsredqrkyeeynkqaneYFDKALPFFQKSESLEPNDVTTL 399
Cdd:COG3914   168 -ALRRALELDPDNAEALNNLGNALQDLG-----------------------------RLEEAIAAYRRALELDPDNADAH 217
                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 1711024975 400 IALREVYARMQDFDMVQEFAERLSKLEAGEEIESSYF 436
Cdd:COG3914   218 SNLLFALRQACDWEVYDRFEELLAALARGPSELSPFA 254
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
195-428 1.17e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.89  E-value: 1.17e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 195 LQAGQRQEAEGFLSMLYEKRFDEPRVYTTLFELYVDEDE-EKALAFLEAGKEVDAENIDILYAEINFYIRKQDFQQLQEK 273
Cdd:COG2956    53 RRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLlDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEV 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 274 LTLAIEKDPENHSLYNVLGNVfmslmteAMEEGDSALAEEYfatsrnyLEQAIEIEPNFFEPYYTIGSMYFNRGAvitqr 353
Cdd:COG2956   133 LERLLKLGPENAHAYCELAEL-------YLEQGDYDEAIEA-------LEKALKLDPDCARALLLLAELYLEQGD----- 193
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1711024975 354 mnelgmsredqrkyeeynkqaneyFDKALPFFQKSESLEPNDVTTLIALREVYARMQDFDMVQEFAERLSKLEAG 428
Cdd:COG2956   194 ------------------------YEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS 244
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
227-426 2.31e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.12  E-value: 2.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 227 LYVDEDEEKALAFLEAGKEVDAENIDILYAEINFYIRKQDFQQLQEKLTLAIEKDPENHSLYNVLGNVFMSLmteameeG 306
Cdd:COG2956    18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKA-------G 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 307 DSALAEEYFatsrnylEQAIEIEPNFFEPYYTIGSMYFNRG----AVITQRMnelgMSREDQRKYEEYNKQANEY----- 377
Cdd:COG2956    91 LLDRAEELL-------EKLLELDPDDAEALRLLAEIYEQEGdwekAIEVLER----LLKLGPENAHAYCELAELYleqgd 159
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1711024975 378 FDKALPFFQKSESLEPNDVTTLIALREVYARMQDFDMVQEFAERLSKLE 426
Cdd:COG2956   160 YDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD 208
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
187-347 9.00e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.01  E-value: 9.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 187 LYILGITGLQAGQRQEAEGFLSMLYEKRFDEPRVYTTLFELYVD-EDEEKALAFLEAGKEVDAENIDILYAEINFYIRKQ 265
Cdd:COG0457    11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRlGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 266 DFQQLQEKLTLAIEKDPENHSLYNVLGNVFMSLmteameeGDSALAEEYFatsrnylEQAIEIEPNFFEPYYTIGSMYFN 345
Cdd:COG0457    91 RYEEALEDYDKALELDPDDAEALYNLGLALLEL-------GRYDEAIEAY-------ERALELDPDDADALYNLGIALEK 156

                  ..
gi 1711024975 346 RG 347
Cdd:COG0457   157 LG 158
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
248-429 7.32e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.57  E-value: 7.32e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 248 AENIDILYAEINFYIRKQDFQQLQEKLTLAIEKDPENHSLYNVLGNVFMSLmteameeGDSALAEEYfatsrnyLEQAIE 327
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQL-------GDLDEAIVL-------LHEALE 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 328 IEPNFFEPYYTIGSMYFNRGAvitqrmnelgmsredqrkyeeynkqaneyFDKALPFFQKSESLEPNDVTTLIALREVYA 407
Cdd:COG4783    67 LDPDEPEARLNLGLALLKAGD-----------------------------YDEALALLEKALKLDPEHPEAYLRLARAYR 117
                         170       180
                  ....*....|....*....|..
gi 1711024975 408 RMQDFDMVQEFAERLSKLEAGE 429
Cdd:COG4783   118 ALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
304-425 4.35e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.11  E-value: 4.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 304 EEGDSALAEEYFATSRNYLEQAIEIEPNFFEPYYTIGSMYFNRG----AVitqRMNELGMSREDQRkYEEYNKQANEY-- 377
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGeydrAI---RIHQKLLERDPDR-AEALLELAQDYlk 88
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1711024975 378 ---FDKALPFFQKSESLEPNDVTTLIALREVYARMQDFDMVQEFAERLSKL 425
Cdd:COG2956    89 aglLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
227-347 7.98e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.49  E-value: 7.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 227 LYVDEDEEKALAFLEAGKEVDAENIDILYAEINFYIRKQDFQQLQEKLTLAIEKDPENHSLYNVLGNVFMSLmteameeG 306
Cdd:COG4783    14 LLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA-------G 86
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1711024975 307 DSALAEEYFatsrnylEQAIEIEPNFFEPYYTIGSMYFNRG 347
Cdd:COG4783    87 DYDEALALL-------EKALKLDPEHPEAYLRLARAYRALG 120
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
187-332 9.04e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.49  E-value: 9.04e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 187 LYILGITGLQAGQRQEAEGFLSMLYEKRFDEPRVYTTLFELYVD-EDEEKALAFLEAGKEVDAENIDILYAEINFYIRKQ 265
Cdd:COG4783     7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQlGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1711024975 266 DFQQLQEKLTLAIEKDPENHSLYNVLGNVFMSLmteameeGDSALAEEYFatsrnylEQAIEIEPNF 332
Cdd:COG4783    87 DYDEALALLEKALKLDPEHPEAYLRLARAYRAL-------GRPDEAIAAL-------EKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
187-331 1.30e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.56  E-value: 1.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 187 LYILGITGLQAGQRQEAEGFLSMLYEKRFDEPRVYTTLFELYVDE-DEEKALAFLEAGKEVDAENIDILYAEINFYIRKQ 265
Cdd:COG2956   113 LRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQgDYDEAIEALEKALKLDPDCARALLLLAELYLEQG 192
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1711024975 266 DFQQLQEKLTLAIEKDPENHSLYNVLGNVFMSLmteameeGDSALAEEyfatsrnYLEQAIEIEPN 331
Cdd:COG2956   193 DYEEAIAALERALEQDPDYLPALPRLAELYEKL-------GDPEEALE-------LLRKALELDPS 244
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
45-430 1.24e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.22  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975  45 NQENLNEAKNLIAEALSTDEGRAEfrAWQTQGEIHNASLTYQLTLIQLEQQERFsDPNEamIASRAFRNALDLAERRHES 124
Cdd:TIGR02917 171 AENRFDEARALIDEVLTADPGNVD--ALLLKGDLLLSLGNIELALAAYRKAIAL-RPNN--IAVLLALATILIEAGEFEE 245
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 125 RDA-LDGLTEAA-GHLGiignfyitsAEYAQSFLPLKEvyeiHNILVANERdpiFEDEEELNNH----LYILGITGLQAG 198
Cdd:TIGR02917 246 AEKhADALLKKApNSPL---------AHYLKALVDFQK----KNYEDARET---LQDALKSAPEylpaLLLAGASEYQLG 309
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 199 QRQEAEGFLSMlYEKRF-DEPRVYTTLFELYVDE-DEEKALAFLEAGKEVDAENIDILYAEINFYIRKQDFQQLQEKLTL 276
Cdd:TIGR02917 310 NLEQAYQYLNQ-ILKYApNSHQARRLLASIQLRLgRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAK 388
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 277 AIEKDPENHSLYNVLGNVFMSL---------------MTEAMEEGDSALAEEY-----FATSRNYLEQAIEIEPNFFEPY 336
Cdd:TIGR02917 389 ATELDPENAAARTQLGISKLSQgdpseaiadletaaqLDPELGRADLLLILSYlrsgqFDKALAAAKKLEKKQPDNASLH 468
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 337 YTIGSMYFNRGAVITQRMNeLGMSRE-DQRKYEEYNKQAN-----EYFDKALPFFQKSESLEPNDVTTLIALREVYARMQ 410
Cdd:TIGR02917 469 NLLGAIYLGKGDLAKAREA-FEKALSiEPDFFPAAANLARidiqeGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547
                         410       420
                  ....*....|....*....|
gi 1711024975 411 DFDMVQEFAERLSKLEAGEE 430
Cdd:TIGR02917 548 NEEEAVAWLEKAAELNPQEI 567
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
278-421 1.38e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.38  E-value: 1.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 278 IEKDPENHSLYNVLGNVFMSLmteameeGDSALAEEYFatsrnylEQAIEIEPNFFEPYYTIGSMYFNRGAV-------- 349
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRL-------GRYEEAIEDY-------EKALELDPDDAEALYNLGLAYLRLGRYeealadye 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 350 --------ITQRMNELGMSREDQRKYEEynkqANEYFDKALpffqkseSLEPNDVTTLIALREVYARMQDFDMVQEFAER 421
Cdd:COG0457    67 qaleldpdDAEALNNLGLALQALGRYEE----ALEDYDKAL-------ELDPDDAEALYNLGLALLELGRYDEAIEAYER 135
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
235-347 1.75e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.45  E-value: 1.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 235 KALAFLEAGKEVDAENIDILYAEINFYIRKQDFQQLQEKLTLAIEKDPENHSLYNVLGNVFMSLmteameeGDSALAEEY 314
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAA-------GDTEEAEEL 73
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1711024975 315 FatsrnylEQAIEIEPNFFEPYYTIGSMYFNRG 347
Cdd:COG4235    74 L-------ERALALDPDNPEALYLLGLAAFQQG 99
RPN2 COG5116
26S proteasome regulatory complex component [Posttranslational modification, protein turnover, ...
180-295 3.80e-03

26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227446 [Multi-domain]  Cd Length: 926  Bit Score: 39.55  E-value: 3.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 180 EEELNNHLYILGITGLqagqrqEAEGFLSMLYEKRFD----EPRV-YTTLFELYVD-EDEEKALAFLEAGKEvdaENIDI 253
Cdd:COG5116   171 DCDIINYLLDLAITLV------EEEGFRKEILRMLAEigpgKPKPdYFYVIKAVVYlNDAEKAKALIEKLVK---ENDLL 241
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1711024975 254 LYAEINFYIRKQDFQQLQEKLTLAIEKDPENHSLYNVLGNVF 295
Cdd:COG5116   242 LYAQVAFDLEDSASQEILEILVTELVAQGYDQAVMSILSGEF 283
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
261-347 3.93e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 3.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 261 YIRKQDFQQLQEKLTLAIEKDPENHSLYNVLGNVFMSLmteameeGDSALAEEYfatsrnylEQAIEIEPNFFEPYYTIG 340
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQ-------GRYDEAIAL--------EKALKLDPNNAEALLNLA 66

                  ....*..
gi 1711024975 341 SMYFNRG 347
Cdd:COG3063    67 ELLLELG 73
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
187-413 7.11e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 38.91  E-value: 7.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 187 LYILGITGLQAGQRQEAEGFLSMLYEKRFDEPRVYTTLFELYVDE-DEEKALAFLEAGKEVDAENIDILYAEINFYIRKQ 265
Cdd:TIGR02917 366 LSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQgDPSEAIADLETAAQLDPELGRADLLLILSYLRSG 445
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 266 DFQQLQEKLTLAIEKDPENHSLYNVLGNVFM---------------------------SLMTEAMEEGDSALAEEYF--- 315
Cdd:TIGR02917 446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLgkgdlakareafekalsiepdffpaaaNLARIDIQEGNPDDAIQRFekv 525
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711024975 316 ------------------------ATSRNYLEQAIEIEPNFFEPYYTIGSMYFNRGavitQRMNELGMSRE---DQRKYE 368
Cdd:TIGR02917 526 ltidpknlrailalaglylrtgneEEAVAWLEKAAELNPQEIEPALALAQYYLGKG----QLKKALAILNEaadAAPDSP 601
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1711024975 369 EY------NKQANEYFDKALPFFQKSESLEPNDVTTLIALREVYARMQDFD 413
Cdd:TIGR02917 602 EAwlmlgrAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYA 652
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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