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Conserved domains on  [gi|1728661359|gb|TXU88914|]
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DUF1294 domain-containing protein [Klebsiella oxytoca]

Protein Classification

DUF1294 domain-containing protein( domain architecture ID 10007224)

DUF1294 domain-containing protein similar to Bacillus subtilis protein YsdA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YsdA COG3326
Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown];
20-106 1.06e-28

Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown];


:

Pssm-ID: 442555  Cd Length: 90  Bit Score: 99.46  E-value: 1.06e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728661359  20 FTSWPFAVWLLLINVLTLVIYGVDKMAARRAWRRVPEATLLSFGLLGGWAGAIAGQRLFRHKTQKQPFRTWFVISTMVSI 99
Cdd:COG3326     2 RLPLILLLYLLLINLLTFLLYGIDKRAARKGRWRIPEKTLLLLALLGGWPGALLGQQLFRHKTRKKSFRIGFWLIVLLNL 81


                  ....*..
gi 1728661359 100 AGMAAIY 106
Cdd:COG3326    82 ALLAWLL 88
 
Name Accession Description Interval E-value
YsdA COG3326
Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown];
20-106 1.06e-28

Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown];


Pssm-ID: 442555  Cd Length: 90  Bit Score: 99.46  E-value: 1.06e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728661359  20 FTSWPFAVWLLLINVLTLVIYGVDKMAARRAWRRVPEATLLSFGLLGGWAGAIAGQRLFRHKTQKQPFRTWFVISTMVSI 99
Cdd:COG3326     2 RLPLILLLYLLLINLLTFLLYGIDKRAARKGRWRIPEKTLLLLALLGGWPGALLGQQLFRHKTRKKSFRIGFWLIVLLNL 81


                  ....*..
gi 1728661359 100 AGMAAIY 106
Cdd:COG3326    82 ALLAWLL 88
DUF1294 pfam06961
Protein of unknown function (DUF1294); This family includes a number of hypothetical bacterial ...
 33-87 3.04e-23

Protein of unknown function (DUF1294); This family includes a number of hypothetical bacterial and archaeal proteins of unknown function.


Pssm-ID: 462051  Cd Length: 55  Bit Score: 84.71  E-value: 3.04e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1728661359  33 NVLTLVIYGVDKMAARRAWRRVPEATLLSFGLLGGWAGAIAGQRLFRHKTQKQPF 87
Cdd:pfam06961   1 NLITFILYGIDKRKARKGRWRIPEKTLLLLALLGGSPGALLGMRLFRHKTRKKSF 55
 
Name Accession Description Interval E-value
YsdA COG3326
Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown];
20-106 1.06e-28

Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown];


Pssm-ID: 442555  Cd Length: 90  Bit Score: 99.46  E-value: 1.06e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728661359  20 FTSWPFAVWLLLINVLTLVIYGVDKMAARRAWRRVPEATLLSFGLLGGWAGAIAGQRLFRHKTQKQPFRTWFVISTMVSI 99
Cdd:COG3326     2 RLPLILLLYLLLINLLTFLLYGIDKRAARKGRWRIPEKTLLLLALLGGWPGALLGQQLFRHKTRKKSFRIGFWLIVLLNL 81


                  ....*..
gi 1728661359 100 AGMAAIY 106
Cdd:COG3326    82 ALLAWLL 88
DUF1294 pfam06961
Protein of unknown function (DUF1294); This family includes a number of hypothetical bacterial ...
 33-87 3.04e-23

Protein of unknown function (DUF1294); This family includes a number of hypothetical bacterial and archaeal proteins of unknown function.


Pssm-ID: 462051  Cd Length: 55  Bit Score: 84.71  E-value: 3.04e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1728661359  33 NVLTLVIYGVDKMAARRAWRRVPEATLLSFGLLGGWAGAIAGQRLFRHKTQKQPF 87
Cdd:pfam06961   1 NLITFILYGIDKRKARKGRWRIPEKTLLLLALLGGSPGALLGMRLFRHKTRKKSF 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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