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Conserved domains on  [gi|1728894138|gb|TXX14672|]
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ABC transporter permease [Enterococcus gallinarum]

Protein Classification

methionine ABC transporter permease( domain architecture ID 10005172)

methionine ABC transporter permease is the transmembrane (TM) subunit of the ABC transporter complex, such as MetNPQ, that is involved in methionine import, and is responsible for the translocation of the substrate across the membrane

EC:  7.4.2.11
Gene Ontology:  GO:0033232|GO:0048473|GO:0042626
PubMed:  22095702|11421270|25750732|24638992
TCDB:  3.A.1.24

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 8-226 1.13e-82

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


:

Pssm-ID: 441614  Cd Length: 220  Bit Score: 245.35  E-value: 1.13e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138   8 YFPNVVAISDEFVEATIQTLYMTFWTALIAGILGIILGIVLVVTRPGGILESRGLFELLDKIINIVRSIPFIILLALLGT 87
Cdd:COG2011     1 MLTMWSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  88 TTRLIVGTTIGETAALVPLIAGIIPFFARQIEIALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGIIRVSALTIINV 167
Cdd:COG2011    81 LTRLIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISL 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1728894138 168 IGLTAMAGAVGAGGLGNLAITRGYNRFQNDVTIMATLIILILVFFSQFVSNLLVKKVSH 226
Cdd:COG2011   161 IGYSAMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDH 219
 
Name Accession Description Interval E-value
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 8-226 1.13e-82

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 245.35  E-value: 1.13e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138   8 YFPNVVAISDEFVEATIQTLYMTFWTALIAGILGIILGIVLVVTRPGGILESRGLFELLDKIINIVRSIPFIILLALLGT 87
Cdd:COG2011     1 MLTMWSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  88 TTRLIVGTTIGETAALVPLIAGIIPFFARQIEIALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGIIRVSALTIINV 167
Cdd:COG2011    81 LTRLIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISL 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1728894138 168 IGLTAMAGAVGAGGLGNLAITRGYNRFQNDVTIMATLIILILVFFSQFVSNLLVKKVSH 226
Cdd:COG2011   161 IGYSAMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDH 219
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
19-226 1.38e-41

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 140.64  E-value: 1.38e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  19 FVEATIQTLYMTFWTALIAGILGIILGIVLVVTRPGGILESRGLFELLDKIINIVRSIPFIILLALLGTTTRLIVGTTIG 98
Cdd:PRK10782    9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTRVIVGTSIG 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  99 ETAALVPLIAGIIPFFARQIEIALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGIIRVSALTIINVIGLTAMAGAVG 178
Cdd:PRK10782   89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVG 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1728894138 179 AGGLGNLAITRGYNRFqnDVTIMATLIIL--ILVFFSQFVSNLLVKKVSH 226
Cdd:PRK10782  169 AGGLGQIGYQYGYIGY--NATVMNTVLVLlvILVYLIQFAGDRIVRAVTH 216
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 24-213 2.31e-07

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 49.20  E-value: 2.31e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  24 IQTLYMTFWTALIAGILGIILGIVLVVTRpggilesRGLFELLDKIINIVRSIPFIILLALLGTTTRLIVGTTIGETAAL 103
Cdd:cd06261     2 LNTLLLALIATLLALVLGLLLGIILARKR-------GKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGL 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138 104 VPLIAGII---PFFARQIEIALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGIIRVSALTIINVIGLTAMAGA--VG 178
Cdd:cd06261    75 PALILALLliaPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFlgGG 154

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1728894138 179 AGGLGNLAITRGYNRFQNDVTIMATLIILILVFFS 213
Cdd:cd06261   155 EAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 1-220 8.00e-07

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 48.31  E-value: 8.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138   1 MSTFFERYFPNVVAISDEFVEATIQTLYMTFWTALIAGILGIILGIVLVvtrpGGILESRGLFELLDKIINIVRSIPFII 80
Cdd:TIGR01097  38 MADLLGRMFPPDWSYLPRILKALLETLAMAILGTVLAAVLAVPLALLAA----RNITPSPWLYGLARLLLNFLRAIPELV 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  81 LlALLgtttrLIVGTTIGETAALVPLIAGIIPFFARQIEIALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGIIRVS 160
Cdd:TIGR01097 114 W-ALI-----FVAAVGLGPFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFLSYT 187

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1728894138 161 ALTI-INVIGLTAMAGAVGAGGLGNLAITRgyNRFQNDVTIMATLIILILVFFSQFVSNLL 220
Cdd:TIGR01097 188 LYRFeINVRAAAVLGLVGAGGIGLELDTAI--GLFDYDEVSAIILVILVVVVIIDLISARL 246
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 41-222 7.19e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 44.98  E-value: 7.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  41 GIILGIVLvvtrpgGILESRGLFELLDKIINIVRSIPFIILLALLgTTTRLIVGTTIGETAALVPLIAGIIPFFARQIEI 120
Cdd:pfam00528   1 GIPLGIIA------ALRRGRRLDRLLRPLIDLLQALPSFVLAILL-VVIAILSILGHGILPAIILALLGWAGYARLIRRA 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138 121 ALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGIIRVSALTIINVIGLTAMAGAVGAGGLGNLAITRGYNRFQNDVTI 200
Cdd:pfam00528  74 ALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQ 153

                         170       180
                  ....*....|....*....|..
gi 1728894138 201 MATLIILILVFFSQFVSNLLVK 222
Cdd:pfam00528 154 GPVLAAALILLLLNLLVDILQR 175
 
Name Accession Description Interval E-value
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 8-226 1.13e-82

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 245.35  E-value: 1.13e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138   8 YFPNVVAISDEFVEATIQTLYMTFWTALIAGILGIILGIVLVVTRPGGILESRGLFELLDKIINIVRSIPFIILLALLGT 87
Cdd:COG2011     1 MLTMWSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIP 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  88 TTRLIVGTTIGETAALVPLIAGIIPFFARQIEIALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGIIRVSALTIINV 167
Cdd:COG2011    81 LTRLIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISL 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1728894138 168 IGLTAMAGAVGAGGLGNLAITRGYNRFQNDVTIMATLIILILVFFSQFVSNLLVKKVSH 226
Cdd:COG2011   161 IGYSAMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDH 219
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
19-226 1.38e-41

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 140.64  E-value: 1.38e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  19 FVEATIQTLYMTFWTALIAGILGIILGIVLVVTRPGGILESRGLFELLDKIINIVRSIPFIILLALLGTTTRLIVGTTIG 98
Cdd:PRK10782    9 LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTRVIVGTSIG 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  99 ETAALVPLIAGIIPFFARQIEIALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGIIRVSALTIINVIGLTAMAGAVG 178
Cdd:PRK10782   89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVG 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1728894138 179 AGGLGNLAITRGYNRFqnDVTIMATLIIL--ILVFFSQFVSNLLVKKVSH 226
Cdd:PRK10782  169 AGGLGQIGYQYGYIGY--NATVMNTVLVLlvILVYLIQFAGDRIVRAVTH 216
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 16-165 6.96e-12

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 62.38  E-value: 6.96e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  16 SDEFVEATIQTLYMTFWTALIAGILGIILGIVLVVTRPGGilesrglfELLDKIINIVRSIPFIILLALLgtttrlIVGT 95
Cdd:COG1174    13 RDGILALLLEHLLLVLLALLIALLIAVPLGILITRRRRLA--------GLVLGVANILQTIPSLALLALL------IPLL 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1728894138  96 TIGETAALVPLIAGIIPFFARQIEIALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGI---IRVSALTII 165
Cdd:COG1174    79 GIGPAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVIlagIRTAAVQNI 151
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 1-224 1.92e-07

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 50.08  E-value: 1.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138   1 MSTFFERYFPNVVAISDEFVEATIQTLYMTFWTALIAGILGIILGivLVVTRpgGILESRGLFELLDKIINIVRSIPFII 80
Cdd:COG3639    31 LADFLSRFFPPDWSYLPDLLSALLETLAIALLGTLLGAVLALPLA--FLAAR--NLAPNPWVRLLARRLLNVLRAIPELV 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  81 LlALLgtttrLIVGTTIGETAALVPLIAGIIPFFARQIEIALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGIIRVS 160
Cdd:COG3639   107 W-ALI-----FVAAVGLGPFAGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLSYT 180

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1728894138 161 ALTI-INV-------------IGLTamagavgagglgnlaITRGYNRFQNDVTIMATLIILILVFFSQFVSNLLVKKV 224
Cdd:COG3639   181 LYRFeINIraatvlglvgaggIGLL---------------LNEAIRLFQYDEVAAILLVILVLVLLIDLLSARLRRRL 243
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 16-157 1.93e-07

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 50.15  E-value: 1.93e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  16 SDEFVEATIQTLYMTFWTALIAGILGIILGIVLVVtrpggileSRGLFELLDKIINIVRSIPFIILLALLGtttrLIVGt 95
Cdd:COG0600    56 SGELWEHLLASLLRVLLGFALAALLGVPLGLLLGL--------SRLLRRLLDPLLVFLRPIPPLALAPLLI----LWFG- 122

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1728894138  96 tIGETAALVPLIAGIIPFFARQIEIALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGII 157
Cdd:COG0600   123 -IGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIF 183
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 24-213 2.31e-07

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 49.20  E-value: 2.31e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  24 IQTLYMTFWTALIAGILGIILGIVLVVTRpggilesRGLFELLDKIINIVRSIPFIILLALLGTTTRLIVGTTIGETAAL 103
Cdd:cd06261     2 LNTLLLALIATLLALVLGLLLGIILARKR-------GKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGL 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138 104 VPLIAGII---PFFARQIEIALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGIIRVSALTIINVIGLTAMAGA--VG 178
Cdd:cd06261    75 PALILALLliaPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFlgGG 154

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1728894138 179 AGGLGNLAITRGYNRFQNDVTIMATLIILILVFFS 213
Cdd:cd06261   155 EAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 1-220 8.00e-07

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 48.31  E-value: 8.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138   1 MSTFFERYFPNVVAISDEFVEATIQTLYMTFWTALIAGILGIILGIVLVvtrpGGILESRGLFELLDKIINIVRSIPFII 80
Cdd:TIGR01097  38 MADLLGRMFPPDWSYLPRILKALLETLAMAILGTVLAAVLAVPLALLAA----RNITPSPWLYGLARLLLNFLRAIPELV 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  81 LlALLgtttrLIVGTTIGETAALVPLIAGIIPFFARQIEIALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGIIRVS 160
Cdd:TIGR01097 114 W-ALI-----FVAAVGLGPFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFLSYT 187

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1728894138 161 ALTI-INVIGLTAMAGAVGAGGLGNLAITRgyNRFQNDVTIMATLIILILVFFSQFVSNLL 220
Cdd:TIGR01097 188 LYRFeINVRAAAVLGLVGAGGIGLELDTAI--GLFDYDEVSAIILVILVVVVIIDLISARL 246
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 26-168 2.21e-06

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 47.03  E-value: 2.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  26 TLYMTFWTALIAGILGIILGIVLVVTrpGGILEsrglfELLDKIINIVRSIPFIILLALLGTttrlIVGTTIGeTAALVp 105
Cdd:COG1173    81 SLLVGLLAVLIALVIGVLLGLLAGYF--GGWVD-----AVLMRLVDVLLAFPSLLLAIALVA----VLGPGLL-NVILA- 147

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1728894138 106 LIAGIIPFFARQIE-IALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGIIRVSALTIINVI 168
Cdd:COG1173   148 LGLTGWPGYARLVRaQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAI 211
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 41-222 7.19e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 44.98  E-value: 7.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  41 GIILGIVLvvtrpgGILESRGLFELLDKIINIVRSIPFIILLALLgTTTRLIVGTTIGETAALVPLIAGIIPFFARQIEI 120
Cdd:pfam00528   1 GIPLGIIA------ALRRGRRLDRLLRPLIDLLQALPSFVLAILL-VVIAILSILGHGILPAIILALLGWAGYARLIRRA 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138 121 ALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGIIRVSALTIINVIGLTAMAGAVGAGGLGNLAITRGYNRFQNDVTI 200
Cdd:pfam00528  74 ALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQ 153

                         170       180
                  ....*....|....*....|..
gi 1728894138 201 MATLIILILVFFSQFVSNLLVK 222
Cdd:pfam00528 154 GPVLAAALILLLLNLLVDILQR 175
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 14-163 1.20e-05

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 45.13  E-value: 1.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  14 AISDEFVEATIQ-TLYMTFWTALIAGILGIILGIVLVVTR-PGGilesrglfELLDKIINIVRSIPF----IILLALLGT 87
Cdd:COG0555    46 VLTSPRVLAALKlSLGTALIAALINLVFGLPLAWVLVRYRfPGK--------RLVDALVDLPFALPTavagIALLLLFGP 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  88 TTRL----------IVGTTIGETAALVpLIAgiIPFFARQIEIALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGII 157
Cdd:COG0555   118 NGWLgqllaplgikVAFTPLGIVLAQT-FVS--LPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALL 194


                  ....*.
gi 1728894138 158 RVSALT 163
Cdd:COG0555   195 TGFALA 200
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
13-169 1.69e-04

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 42.07  E-value: 1.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  13 VAISDEFVEATIQTLYMTFWTALIAGILGIILGIVLVVTRpggilesRGLFELLDKIINIVRSIPFIIL-LALLGTTTRL 91
Cdd:COG1178   330 VLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRR-------GRLARLLDRLAMLPYAVPGIVLgLGLLLLFNRP 402

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  92 IVGTTIGeTAALVPL--IAGIIPFFARQIEIALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGIIRVSALTIINVIG 169
Cdd:COG1178   403 LPLLLYG-TLAILVLayVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMK 481
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 16-156 5.96e-04

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 39.99  E-value: 5.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  16 SDEFVEATIQTLYMTFWTALIAGILGIILGIVLV-VTRPGGILESRglfelldkIINIVRSIP-FIILLA---LLGTTTR 90
Cdd:PRK15050   68 SPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAfVPFPGASLVGR--------FIDTFVAFPsFLITLAftfLYGSAGS 139

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1728894138  91 LIVGTTIGETAALVPL-----IAGII--------PFFARQIEIALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGI 156
Cdd:PRK15050  140 VNIALQRLFGLEAPPLdflysPGGVIlaeitfytPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPAL 218
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 16-157 6.68e-04

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 39.71  E-value: 6.68e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728894138  16 SDEFVEATIQTLYMTFWTALIAGILGIILGIVLVVTRPGGilesRGLFELLdkiINIVRSIPFIIL-LALLGTTTRLIVG 94
Cdd:COG1177    56 DPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRG----RRLLLAL---LLLPLVVPGIVLgVALLLLFSALGLS 128

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1728894138  95 TTIgeTAALVPLIAGIIPFFARQIEIALLEVDPGVIEAAEAMGTSPLGIIVRVYLPEGLAGII 157
Cdd:COG1177   129 GGL--WGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGIL 189
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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