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Conserved domains on  [gi|1730525340|gb|TYF04635|]
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flagellar basal body protein FlaE [Escherichia coli]

Protein Classification

flagellar hook protein FlgE( domain architecture ID 1012321)

flagellar hook protein FlgE functions as a nano-sized universal joint, which is essential for dynamic and efficient bacterial motility and taxis

CATH:  2.60.98.20
Gene Ontology:  GO:0071973
SCOP:  4003129

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flgE super family cl35508
flagellar basal body protein FlaE;
1-400 2.64e-175

flagellar basal body protein FlaE;


The actual alignment was detected with superfamily member PRK06803:

Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 494.68  E-value: 2.64e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   1 MSYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSMAGTAQSISRGGSLVSTGNALDLAINDD 80
Cdd:PRK06803    1 MSFNIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFSSIYNGGQPGGVEVSSVSQNFSKDGSLTYTGRGLDLAISGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  81 GFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGYPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASD 160
Cdd:PRK06803   81 GFFVLKESDGDTAYTRAGMFRSDVDGYLTDPQGMKLQGYPVDAAGNLQTGNVSDLQVQTASLPAKATDQLDFVANLDASV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 161 DAIDRTTVPFDATNSSSYTDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDpNTGKLTS-- 238
Cdd:PRK06803  161 TPIDPSVSPFDPTDEKSYNSSTTSTVYDSLGNEHAVTQYFVKTATNEWAVHYTVDGGDVTPPLGHTLQFD-DTGALIPgk 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 239 -PTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAADGYASATQNGVQVDDDGKVYATYSNGERMLQGQVVLATF 317
Cdd:PRK06803  240 gSTINLHGTFNPAGASDYDIDIDYTGSTQYAADFNNSRNKSNGYTSGELNGVRIEDNGMVYATYTNGQRQLQGQVVLANF 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 318 PNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALF 397
Cdd:PRK06803  320 ANPNGLVTVSNTAWSASNKSGAPILGTPGTGTLGSLTSGALEGSNVDITAELVGLMTAQRNYQANAKVISTNDTMQQALF 399


                  ...
gi 1730525340 398 QAM 400
Cdd:PRK06803  400 NAI 402
 
Name Accession Description Interval E-value
flgE PRK06803
flagellar basal body protein FlaE;
1-400 2.64e-175

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 494.68  E-value: 2.64e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   1 MSYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSMAGTAQSISRGGSLVSTGNALDLAINDD 80
Cdd:PRK06803    1 MSFNIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFSSIYNGGQPGGVEVSSVSQNFSKDGSLTYTGRGLDLAISGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  81 GFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGYPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASD 160
Cdd:PRK06803   81 GFFVLKESDGDTAYTRAGMFRSDVDGYLTDPQGMKLQGYPVDAAGNLQTGNVSDLQVQTASLPAKATDQLDFVANLDASV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 161 DAIDRTTVPFDATNSSSYTDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDpNTGKLTS-- 238
Cdd:PRK06803  161 TPIDPSVSPFDPTDEKSYNSSTTSTVYDSLGNEHAVTQYFVKTATNEWAVHYTVDGGDVTPPLGHTLQFD-DTGALIPgk 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 239 -PTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAADGYASATQNGVQVDDDGKVYATYSNGERMLQGQVVLATF 317
Cdd:PRK06803  240 gSTINLHGTFNPAGASDYDIDIDYTGSTQYAADFNNSRNKSNGYTSGELNGVRIEDNGMVYATYTNGQRQLQGQVVLANF 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 318 PNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALF 397
Cdd:PRK06803  320 ANPNGLVTVSNTAWSASNKSGAPILGTPGTGTLGSLTSGALEGSNVDITAELVGLMTAQRNYQANAKVISTNDTMQQALF 399


                  ...
gi 1730525340 398 QAM 400
Cdd:PRK06803  400 NAI 402
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-398 1.49e-158

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 452.32  E-value: 1.49e-158
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   1 MSYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQ--------AMGVSMAGTAQSISRGgSLVSTGNA 72
Cdd:COG1749     3 MSFNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSLsganptqvGGGVRVASVAQIFTQG-SLQSTGNA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  73 LDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGYPVDDTGTLQ--TGTVTDIQIKTGNIPAQASSSL 150
Cdd:COG1749    82 LDLAISGNGFFVVSDSGGQTYYTRAGSFSLDKDGYLVNSSGLYLQGYPADADGTIPdtGGGLEPIQIPTGQLPAKATTKV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 151 TFTANFDASDDAIdrtTVPFDATNSSSYTDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ----QTGVPATT 226
Cdd:COG1749   162 TLGGNLPADATVP---TAPFDPTDPTTYNFSTSVTVYDSLGNSHTLTLYFTKTGANTWTVYVTVDGADvtggTGATGTGT 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 227 LTFDpNTGKLTSPTT--PQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAADGYASATQNGVQVDDDGKVYATYSNG 304
Cdd:COG1749   239 LTFD-SNGKLTSPTSggPGTLTLTVNGAAPQTITLDLSGLTQYASSFSVTSLTQDGYAAGTLTGVSIDDDGVVTATYSNG 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 305 ERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTK 384
Cdd:COG1749   318 QTRPLGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALESSNVDLAEELVNMIVAQRAYQANAK 397

                         410
                  ....*....|....
gi 1730525340 385 VIATSTQLDDALFQ 398
Cdd:COG1749   398 VITTSDEMLQTLVN 411
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 1-382 2.77e-54

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 179.37  E-value: 2.77e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   1 MSYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVS-----MAGTAQSISRGGSLVSTGNALDL 75
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSGSGQvgggvRTSGVATDFSQGSLQSTGNSLDL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  76 AINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGYPVddtgtlqtgtvtdiqiktgnipaqasssltftan 155
Cdd:TIGR03506  81 AISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLVTSDGYPLLDWGG---------------------------------- 126

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 156 fdasddaidrttvpfdatnsssytdsytttvydslgnehsvcqyftktsdntwevqytfdgqqqtgvpaTTLTFDPNTGK 235
Cdd:TIGR03506 127 ---------------------------------------------------------------------GPITLPPDAGS 137

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 236 LTspttpqtiefqtdaaapidltvdystctqygsefsvttnaadgyasatqngvqVDDDGKVYATYSNGERMLQGQVVLA 315
Cdd:TIGR03506 138 VS-----------------------------------------------------IGEDGTVSATYSNGQTVELGQIALA 164

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1730525340 316 TFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQAN 382
Cdd:TIGR03506 165 NFPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 321-398 1.22e-14

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 68.45  E-value: 1.22e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1730525340 321 NGLEAVSGTAWVQTgeSGTPLIGVpgsGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQ 398
Cdd:pfam06429   1 AGLEKGGDNLFRET--DGAPILGA---GADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQ 73
 
Name Accession Description Interval E-value
flgE PRK06803
flagellar basal body protein FlaE;
1-400 2.64e-175

flagellar basal body protein FlaE;


Pssm-ID: 235862 [Multi-domain]  Cd Length: 402  Bit Score: 494.68  E-value: 2.64e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   1 MSYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSMAGTAQSISRGGSLVSTGNALDLAINDD 80
Cdd:PRK06803    1 MSFNIALSGLNATTQQLNTISNNIANSSTKGFKGSRTEFSSIYNGGQPGGVEVSSVSQNFSKDGSLTYTGRGLDLAISGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  81 GFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGYPVDDTGTLQTGTVTDIQIKTGNIPAQASSSLTFTANFDASD 160
Cdd:PRK06803   81 GFFVLKESDGDTAYTRAGMFRSDVDGYLTDPQGMKLQGYPVDAAGNLQTGNVSDLQVQTASLPAKATDQLDFVANLDASV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 161 DAIDRTTVPFDATNSSSYTDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQQTGVPATTLTFDpNTGKLTS-- 238
Cdd:PRK06803  161 TPIDPSVSPFDPTDEKSYNSSTTSTVYDSLGNEHAVTQYFVKTATNEWAVHYTVDGGDVTPPLGHTLQFD-DTGALIPgk 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 239 -PTTPQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAADGYASATQNGVQVDDDGKVYATYSNGERMLQGQVVLATF 317
Cdd:PRK06803  240 gSTINLHGTFNPAGASDYDIDIDYTGSTQYAADFNNSRNKSNGYTSGELNGVRIEDNGMVYATYTNGQRQLQGQVVLANF 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 318 PNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALF 397
Cdd:PRK06803  320 ANPNGLVTVSNTAWSASNKSGAPILGTPGTGTLGSLTSGALEGSNVDITAELVGLMTAQRNYQANAKVISTNDTMQQALF 399


                  ...
gi 1730525340 398 QAM 400
Cdd:PRK06803  400 NAI 402
FlgE COG1749
Flagellar hook protein FlgE [Cell motility];
1-398 1.49e-158

Flagellar hook protein FlgE [Cell motility];


Pssm-ID: 441355 [Multi-domain]  Cd Length: 414  Bit Score: 452.32  E-value: 1.49e-158
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   1 MSYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQ--------AMGVSMAGTAQSISRGgSLVSTGNA 72
Cdd:COG1749     3 MSFNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSLsganptqvGGGVRVASVAQIFTQG-SLQSTGNA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  73 LDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGYPVDDTGTLQ--TGTVTDIQIKTGNIPAQASSSL 150
Cdd:COG1749    82 LDLAISGNGFFVVSDSGGQTYYTRAGSFSLDKDGYLVNSSGLYLQGYPADADGTIPdtGGGLEPIQIPTGQLPAKATTKV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 151 TFTANFDASDDAIdrtTVPFDATNSSSYTDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ----QTGVPATT 226
Cdd:COG1749   162 TLGGNLPADATVP---TAPFDPTDPTTYNFSTSVTVYDSLGNSHTLTLYFTKTGANTWTVYVTVDGADvtggTGATGTGT 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 227 LTFDpNTGKLTSPTT--PQTIEFQTDAAAPIDLTVDYSTCTQYGSEFSVTTNAADGYASATQNGVQVDDDGKVYATYSNG 304
Cdd:COG1749   239 LTFD-SNGKLTSPTSggPGTLTLTVNGAAPQTITLDLSGLTQYASSFSVTSLTQDGYAAGTLTGVSIDDDGVVTATYSNG 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 305 ERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTK 384
Cdd:COG1749   318 QTRPLGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALESSNVDLAEELVNMIVAQRAYQANAK 397

                         410
                  ....*....|....
gi 1730525340 385 VIATSTQLDDALFQ 398
Cdd:COG1749   398 VITTSDEMLQTLVN 411
flgE PRK05682
flagellar hook protein FlgE; Validated
 1-400 1.43e-135

flagellar hook protein FlgE; Validated


Pssm-ID: 235557 [Multi-domain]  Cd Length: 407  Bit Score: 393.82  E-value: 1.43e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   1 MSYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQA-------MGVSMAGTAQSISrGGSLVSTGNAL 73
Cdd:PRK05682    1 MSFNTAVSGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSAGtnptqvgSGVKVAGVAQQFS-QGSITSTGNSL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  74 DLAINDDGFFVTcDSAGNISYTRAGSFETDKNGYIVNASGAYLQGYPVDDTG---TLQTGTVTDIQIKTGNIPAQASSSL 150
Cdd:PRK05682   80 DLAISGNGFFVV-SNGGNGFYTRAGAFKLDKNGYLVNAAGYYLQGYPADADGgtpPTVGAGLVPLNIPTTALAPKATTSG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 151 TFTANFDASDDAIdrttvpfdATNSSSYTDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTFDGQQ----QTGVPATT 226
Cdd:PRK05682  159 TFQGNLPSTAAFD--------PTDPDTYNHSTSLTVYDSLGNSHTLDVYFVKTGDNTWEVYVYDDGKPvsttATGTGTTT 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 227 LTFDpNTGKLTSPTTPQTIEF----QTDAAAPIDLTVDYSTCTQYGSEFSVTTNAADGYASATQNGVQVDDDGKVYATYS 302
Cdd:PRK05682  231 LTFD-SNGALTTTTSPTTFNItggaTNGADGGQTITLDLSGSTQYASGFTVSATTQDGYAPGTLTGYSIDDDGTVTAVYS 309

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 303 NGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQAN 382
Cdd:PRK05682  310 NGQTKPLGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESSNVDLSTELVNMIVAQRNYQAN 389

                         410
                  ....*....|....*...
gi 1730525340 383 TKVIATSTQLDDALFQAM 400
Cdd:PRK05682  390 AKTIKTQDQLLQTLVNLR 407
flgE PRK12637
flagellar hook protein FlgE; Provisional
 1-396 2.47e-67

flagellar hook protein FlgE; Provisional


Pssm-ID: 183641 [Multi-domain]  Cd Length: 473  Bit Score: 220.78  E-value: 2.47e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   1 MSYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQ-AMGVSMAGTAQSISRGgSLVSTGNALDLAIND 79
Cdd:PRK12637    1 MGFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRvGLGVKVSAINQRFTVG-NISTTGGEYDMAIDG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  80 -DGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGYPVDDTGtlqtGTVTDIQIKTGNIPAQASSSLTFTANFDA 158
Cdd:PRK12637   80 gKGFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFRLTGYPAGGVG----AQPVDLQLPQGNIAPQATSTAGLQTNLNA 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 159 SDDAIDRTT-------------------------------------------------------------------VPFD 171
Cdd:PRK12637  156 NAKVIDPNDtpavdgtveldgttyrftnaggtfawvapapldgtynggdiviaggavtgdlasqpgyqpykplvagIPFD 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 172 ATNSSSYTDSYTTTVYDSLGNEHSVCQYFTKT----SDNTWEVQYTFDGQ--QQTGVPATTLTFDPNTGKLTSPTTPQ-T 244
Cdd:PRK12637  236 PTNPLSYTDQVPTTVYDSLGNSHQMIQYFAKRpavgTESVYEVYYVLDGQpmQVNGGASQTLNFDTAGNLLNQPPTAQvT 315

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 245 IEFQTDAAAPID---LTVDYSTCTQYGSEFSVTTnAADGYASATQNGVQVDDDGKVYATYSNGERMLQGQVVLATFPNEN 321
Cdd:PRK12637  316 FANPGGNAAPADplaITVSYNGVTQYGSDFAPKV-VQNGYSSGEFMGLSVGKDGSLVAKYTNGETQTIGTLVLANFNNVQ 394

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1730525340 322 GLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDAL 396
Cdd:PRK12637  395 GLQPVGNNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVL 469
FlgEFG_subfam TIGR03506
flagellar hook-basal body protein; This model encompasses three closely related flagellar ...
 1-382 2.77e-54

flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.


Pssm-ID: 274616 [Multi-domain]  Cd Length: 231  Bit Score: 179.37  E-value: 2.77e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   1 MSYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVS-----MAGTAQSISRGGSLVSTGNALDL 75
Cdd:TIGR03506   1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSGSGQvgggvRTSGVATDFSQGSLQSTGNSLDL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  76 AINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGYPVddtgtlqtgtvtdiqiktgnipaqasssltftan 155
Cdd:TIGR03506  81 AISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLVTSDGYPLLDWGG---------------------------------- 126

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 156 fdasddaidrttvpfdatnsssytdsytttvydslgnehsvcqyftktsdntwevqytfdgqqqtgvpaTTLTFDPNTGK 235
Cdd:TIGR03506 127 ---------------------------------------------------------------------GPITLPPDAGS 137

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 236 LTspttpqtiefqtdaaapidltvdystctqygsefsvttnaadgyasatqngvqVDDDGKVYATYSNGERMLQGQVVLA 315
Cdd:TIGR03506 138 VS-----------------------------------------------------IGEDGTVSATYSNGQTVELGQIALA 164

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1730525340 316 TFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQAN 382
Cdd:TIGR03506 165 NFPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQRAYQAN 231
FlgG COG4786
Flagellar basal body rod protein FlgG [Cell motility];
5-392 3.48e-48

Flagellar basal body rod protein FlgG [Cell motility];


Pssm-ID: 443816 [Multi-domain]  Cd Length: 260  Bit Score: 164.60  E-value: 3.48e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   5 IAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMY------AGSQA-------------MGVSMAGTaQSISRGGS 65
Cdd:COG4786     3 TAASGMLAQQTRLDVISNNLANVNTTGFKRDRAVFEDLLyqlirrPGAPSsqgtqtpvglqlgTGVRVAAT-QTDFTQGS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  66 LVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNAsgaylQGYPVDDTGtlqtgtvtdiqiktGNIpaq 145
Cdd:COG4786    82 LQQTGNPLDLAIEGDGFFQVQTPDGETAYTRDGSFQLDADGQLVTS-----DGYPVLPEN--------------GPI--- 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 146 asssltftanfdasddaidrtTVPFDATNsssytdsytttvydslgnehsvcqyftktsdntwevqytfdgqqqtgvpat 225
Cdd:COG4786   140 ---------------------TIPEDATS--------------------------------------------------- 147

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 226 tltfdpntgkltspttpqtiefqtdaaapidltvdystctqygsefsvttnaadgyasatqngVQVDDDGKVYATYSNGE 305
Cdd:COG4786   148 ---------------------------------------------------------------ITISEDGTVSVTLADGD 164

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 306 RMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKV 385
Cdd:COG4786   165 GQQVGQLGLVDFANPAGLEKVGDNLFRETAASGAPIVGTPGEDGLGTLRQGYLEGSNVDVVEEMVDMIEAQRAYEANSKV 244


                  ....*..
gi 1730525340 386 IATSTQL 392
Cdd:COG4786   245 IQTADEM 251
flgG_G_neg TIGR02488
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ...
 5-392 3.82e-33

flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131541 [Multi-domain]  Cd Length: 259  Bit Score: 124.77  E-value: 3.82e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   5 IAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAM------YAGSQA--------------MGVSMAGTaQSISRGG 64
Cdd:TIGR02488   4 TAATGMNAQQTNMDVISNNLANVNTTGFKKDRAEFEDLlyqterQPGAQSseqqtilpvgvqvgLGVRVVAT-QKLFTQG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  65 SLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNAsgaylQGYPVDDTgtlqtgtvtdiqiktgnipa 144
Cdd:TIGR02488  83 SLQNTGNDLDLAIEGEGFFQVLMPDGTTAYTRDGAFKINAEGQLVTS-----NGYPLQPE-------------------- 137

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 145 qasssltftanfdasddaidrTTVPFDATNsssytdsytttvydslgnehsvcqyFTKTSDNTWEVQytfdgqqqtgvpa 224
Cdd:TIGR02488 138 ---------------------ITIPENATS-------------------------ITVGSDGEVSVR------------- 158

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 225 ttltfDPNTgkltspTTPQTIefqtdaaapidltvdystctqygsefsvttnaadgyasatqngvqvdddgkvyatysng 304
Cdd:TIGR02488 159 -----QGGQ------TEPQEV----------------------------------------------------------- 168

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 305 ermlqGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTK 384
Cdd:TIGR02488 169 -----GQITLATFINPAGLEAVGENLFRETPASGPPQIGTPGLDGFGKLRQGFLEASNVNVVQEMVDMITAQRAYEMNSK 243


                  ....*...
gi 1730525340 385 VIATSTQL 392
Cdd:TIGR02488 244 AIQASDQM 251
flgG PRK12636
flagellar basal body rod protein FlgG; Provisional
 16-389 2.30e-32

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183640 [Multi-domain]  Cd Length: 263  Bit Score: 122.94  E-value: 2.30e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  16 QLDGISNNIANAGTVGYKSMTTQFSAMY----AGSQAMGV-------------SMAGTAQSISRGGSLVSTGNALDLAIN 78
Cdd:PRK12636   18 KLDVIGNNIANVNTYGFKKSRVTFKDMVsqtiSGASGPTAnrggvnskqvglgSQLGAIDTIHTQGSLQTTGRPLDLAIS 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  79 DDGFFVTcDSAGNISYTRAGSFETDKNGYIVNASGAYLQGypvddtgtlqtgtvtdiqiktgnipaqasssltftanfda 158
Cdd:PRK12636   98 GDGFFRV-GDGDNTAYTRAGNFYLDNEGNIVNADGLYLLG---------------------------------------- 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 159 sddaidrttvpfdatnsssytdsytttvydslgnehsvcqyftktsdntwevqytfdgqqqtgvpattltfdPNTGKLTS 238
Cdd:PRK12636  137 ------------------------------------------------------------------------MNGGRIQI 144

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 239 PTTPQTiefqtdaaapidltvdystctqygsefsvttnaadgyasatqngVQVDDDGKVYATYSNGERMLQGQVVLATFP 318
Cdd:PRK12636  145 PTDAQS--------------------------------------------FSIGADGTVSYVDAGGELQTAGQIGLATFA 180

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1730525340 319 NENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIATS 389
Cdd:PRK12636  181 NPDGLEKAGDNLYRETLNSGTPSAVVPGEGGTGKIVSGALEMSNVDLAEEFTEMIVAQRGFQANTRIITTS 251
flgG PRK12693
flagellar basal body rod protein FlgG; Provisional
 5-392 8.94e-30

flagellar basal body rod protein FlgG; Provisional


Pssm-ID: 183687 [Multi-domain]  Cd Length: 261  Bit Score: 115.73  E-value: 8.94e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   5 IAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFS-AMY-----AGSQA-------------MGVSMAGTaQSISRGGS 65
Cdd:PRK12693    7 IAKTGLDAQQTNIDVISNNLANVNTTGFKKSRAVFEdLLYqtirqPGAQSsqnttlpsglqvgTGVRPVAT-QKIFTQGN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  66 LVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASgaylqGYPVddtgtlqtgtvtdiqiktgnIPAq 145
Cdd:PRK12693   86 LQQTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLVTSG-----GYPL--------------------QPE- 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 146 asssltftanfdasddaidrTTVPFDATNsssytdsytttvydslgnehsvcqyftktsdntwevqytfdgqqqtgvpat 225
Cdd:PRK12693  140 --------------------ITIPENATS--------------------------------------------------- 148

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 226 tltfdpntgkltspttpqtiefqtdaaapidltvdystctqygseFSVTTnaaDGYASATQNGvqvdddgkvyatysNGE 305
Cdd:PRK12693  149 ---------------------------------------------ITIGT---DGTVSVTQAG--------------QAA 166

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 306 RMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKV 385
Cdd:PRK12693  167 PQVVGQITLTDFINPAGLESIGENLYLETAASGAPIEGTPGLNGLGTLRQGFLETSNVNVVEELVNMITGQRAYEMNSKA 246


                  ....*..
gi 1730525340 386 IATSTQL 392
Cdd:PRK12693  247 ISTADQM 253
flgE PRK08425
flagellar hook protein FlgE; Validated
 131-398 1.70e-29

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 120.57  E-value: 1.70e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 131 TVTDIQIKTGNIpaqaSSSLTFTANFDASDDAIdrtTVPFDATNSSSY----TDSYTTTVYDSLGNEHSVCQYFTKTS-- 204
Cdd:PRK08425  444 FVTGYSSKNDNV----TNNVLFTNIMKGLNGAS---LIEGGASASSSKlthaTHAASIDIYDSLGSKHTLRIEFYKSStt 516

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 205 ---DNTW----------EVQYTFDGQQqTGVPATTLTFDpNTGKLTSpTTPQTIEFQTD--AAAPIDLTVDYSTCTQYG- 268
Cdd:PRK08425  517 qdgGAEWnmiiivpepaEINGGSEGRP-NNFEGGRLRFN-NDGSLAG-MNPPTLQFDPNngAAAPQRINLSFGTSGSFDg 593

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 269 -----SEFSVTTNAADGYASATQNGVQVDDDGKVYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIG 343
Cdd:PRK08425  594 ltsvdKISETYAIEQDGYTAGDLMDIRFDSDGTILGAFTNGRTFALAQVALANFANNAGLQAEGGNVFSQTANSGQAVIG 673

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1730525340 344 VPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQ 398
Cdd:PRK08425  674 AAGTGGRGSISGSKLEMSNVDLSRSLTQLIVIQRGFQANSKTITTSDQMLNTLLQ 728
flgE_epsilon TIGR02489
flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar ...
 147-398 1.30e-25

flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the Proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.


Pssm-ID: 131542 [Multi-domain]  Cd Length: 719  Bit Score: 108.88  E-value: 1.30e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 147 SSSLTFTANFDASDDAIdrTTVPFDATNSSSY---TDSYTTTVYDSLGNEHSVCQYFTKTSDNTWEVQYTF--------- 214
Cdd:TIGR02489 449 TTNVLFKAIMKALNTGP--LTEGGSIKESEQLklaAHSAGLDIVDSLGSKHTLEVQFVKQGGNEWSFIIRVpepaefngg 526

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 215 DGQQQTGVPATTLTFDpNTGKLTSpTTPQTIEF--QTDAAAPIDLTVDYSTCTQYG------SEFSVTTNAADGYASATQ 286
Cdd:TIGR02489 527 SGEGPNIFEGGRARFN-NDGSLAG-MNPPTIQFspKNGAAPPQRIKLSFGTSGTFDgltssdKASTTTGIAQNGYQSGNL 604

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 287 NGVQVDDDGKVYATYSNGERMLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDIT 366
Cdd:TIGR02489 605 KDIRFDSNGNLLGEFSNGKTFALAQVAMASFANNSGLQAEGGNLFSQTANSGEPVVGEAGTGGRGEMSTSALEMSNVDLS 684

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1730525340 367 SELVNLMTAQRNYQANTKVIATSTQLDDALFQ 398
Cdd:TIGR02489 685 RSLTQLIVVQRGFQANSKTVTTSDQILNTLLQ 716
flgG PRK12692
flagellar basal body rod protein FlgG; Reviewed
 5-392 2.70e-25

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 139158 [Multi-domain]  Cd Length: 262  Bit Score: 103.39  E-value: 2.70e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   5 IAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMY------------AGSQA--------MGVSMAGTaQSISRGG 64
Cdd:PRK12692    6 IAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTDLLyqaerqqgvpnqAGQEAvpegamlgLGVRAAAI-RNLHRQG 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  65 SLVSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNAsgaylQGYPVDDTGTLQTGTVtDIQIktgnipa 144
Cdd:PRK12692   85 SLAQTGNQLDLAVNGRGYFQVTSPNGEIQYTRAGSFNKNAAGQLVTM-----EGYAVDPAILIPQNTT-QVTI------- 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 145 qasssltftanfdasddaidrttvpfdatnsssytdsytttvydslgNEhsvcqyftktsdnTWEVQYTFDGQQqtgvpa 224
Cdd:PRK12692  152 -----------------------------------------------NE-------------SGQVFAKIDGQV------ 165

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 225 ttltfdpntgkltsptTPQTIefqtdaaapidltvdystctqygsefsvttnaadgyasatqngvqvdddgkvyatysng 304
Cdd:PRK12692  166 ----------------APQNL----------------------------------------------------------- 170

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 305 ermlqGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTK 384
Cdd:PRK12692  171 -----GQLTLANFANESGLEPLGNGLYRETPASGAPVVGNPGDVGFGKIQQGYLEGSNVDPVKEITSLITAQRAFEMNSK 245


                  ....*...
gi 1730525340 385 VIATSTQL 392
Cdd:PRK12692  246 VIQAADEM 253
flgE PRK08425
flagellar hook protein FlgE; Validated
 8-196 2.02e-20

flagellar hook protein FlgE; Validated


Pssm-ID: 236263 [Multi-domain]  Cd Length: 731  Bit Score: 93.22  E-value: 2.02e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   8 TGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYA--------------GSQAMGVSMAGTAQSISR---GGSLVSTG 70
Cdd:PRK08425   10 SGLQAHQIAMDVEGNNIANVNTTGFKYSRASFVDMLSqtkliatapkgglgGQNDMQIGLGVGVSSTTKifsQGSIQNTD 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  71 NALDLAINDDGFFVTCDSAGNI-SYTRAGSFETDKNGYIVNASGAYLQGYPVD-DTGTLQ-TGTVTDIQIKTG-NIPAQA 146
Cdd:PRK08425   90 KNTDLAIQGDGFFIVSPDGGTTrNYTRDGDFKFDAQGNFVNNGGYVVQGWVSDtDTGTIDsTGPIQNIRIDPGmVMPARA 169

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 147 SSSLTFTANFDASDD---------AIDRTTVPFDATNSSSYT-DSYTTTVYDSLGNEHSV 196
Cdd:PRK08425  170 STEVSIKANLNSGRHigtqsapiyALDSVHGWNDKTGDTAKTnDDGINPFYDSSKNLAQV 229
flgE PRK05841
flagellar hook protein FlgE; Validated
 17-392 5.00e-19

flagellar hook protein FlgE; Validated


Pssm-ID: 235620 [Multi-domain]  Cd Length: 603  Bit Score: 89.13  E-value: 5.00e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  17 LDGISNNIANAGTVGYKSMTTQFSAMYAGSQAM-------------GVSMAGTAQSiSRGGSLVSTGNALDLAINDDGFF 83
Cdd:PRK05841   19 LDSLSNNIANVNTLGYRSNIPEFKTLFSSHLDAlnaksvvandrnyGVTGSSNAIS-NKDGEYKPSDGEFHMAYQGKGWF 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  84 VT-CDSAGNIS-------------YTRAGSFETDKNGYIVNASGAYLQGYpvdDTGTLQTGTVTDIQIKTGNIPAQASSS 149
Cdd:PRK05841   98 VVgPNKNGSMTinkdgfskkqdnyFTRDGSFARDADGYLVNPEGYYVYGI---DLGKIKDGTLNSTARDEADIEKLHGNT 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 150 LT-------------------FTANFDASDDAI---------------------------DRTTVPFDATN--------- 174
Cdd:PRK05841  175 LSplqipqdltyqpvlttkvgISVNLNPKDHLKgvqdfflndkgefikerflnqdinalaNDDNEPIDAITnrklnitiq 254

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 175 ------------------------------------------------------------SSSYTD-------------- 180
Cdd:PRK05841  255 kedgkkedfvftygdaekgenqfktlgdlkkllkektgldlnlirsekgaksppllleiaNPSQTPitfslsggiadklg 334

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 181 ----------------------SYTTTV--YDSLGNEHSV-CQYFTKTSDN---------TWEVQytfdgqqqtgvpatT 226
Cdd:PRK05841  335 lnangmelkkgisrdsvaikipSYSTEVeiYDKAGDKYLLqSEYYMTNSGDptssprknqTWEVK--------------S 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 227 LTFDPNTGKLTSP-TTPQTIEFQTD---AAAPIDLTVDYSTCTQY--GSEFSVTTN-----------AADGYASATQNGV 289
Cdd:PRK05841  401 YIVDPKNKTPINTdPTWEIVGFDAThkmKAAPMTLDFKGNKLTYSldKSEDHDSSNlsyqdsklleaSQDGKPRGILRDV 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 290 QVDDDGKVYATYSNGERMLQGQVVLATFPNENGLEAVSG-----TAWVQTGE----SGTPLIGVPGSGTC--GTLSSGVL 358
Cdd:PRK05841  481 RIDENGVISLAFSNGVVEPMGRIGIAAFTNDQGLRKVGGnlfemQEGTINGEnrplSGNPILGWDEEGKLkfGKVRHKYL 560

                         570       580       590
                  ....*....|....*....|....*....|....
gi 1730525340 359 ESSNVDITSELVNLMTAQRNYQANTKVIATSTQL 392
Cdd:PRK05841  561 ETSNVDAGNALTNLILMQRGYSMNARAFGTGDDL 594
flgG PRK12817
flagellar basal body rod protein FlgG; Reviewed
 6-116 7.61e-19

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183767 [Multi-domain]  Cd Length: 260  Bit Score: 85.51  E-value: 7.61e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   6 AATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAM------------------YAGSQA-MGVSMAGTAQsisrgGSL 66
Cdd:PRK12817    8 SKSGMNAQQEKLDSISNNLANVNTTGYKREDVSFSDLvyetldrkgyptndkpeiITGTGVkATNWIRDNQQ-----GNL 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1730525340  67 VSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYL 116
Cdd:PRK12817   83 LTTGNKTDLAIDGEGFFRVIMADGTYAYTRAGNFNIDSNGMLVDDNGNRL 132
flgG PRK12816
flagellar basal body rod protein FlgG; Reviewed
 6-389 1.91e-17

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183766 [Multi-domain]  Cd Length: 264  Bit Score: 81.39  E-value: 1.91e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   6 AATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMY------AGSQAM-------------GVSMAGTaQSISRGGSL 66
Cdd:PRK12816    8 AASGMNAQQFNIDTIANNLANVNTTGFKKIRAEFEDLIyqtqrrAGTPATedtvtplgvqvghGVKVAAT-QRLFEQGSL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  67 VSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLqgypvddtgtlqtgtvtdiqiktgnIPaqa 146
Cdd:PRK12816   87 QATGNKLDVAIEGEGFFKILMPDGTYAYTRDGSFKIDANGQLVTSNGYRL-------------------------LP--- 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 147 ssSLTFTANFDASDDAIDRttvpfdatnsssytdsytttvydslgnehsvcqyftktsdntwevqytfdgqqqtgvpatt 226
Cdd:PRK12816  139 --EIIFPENYILNSITISE------------------------------------------------------------- 155

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 227 ltfdpntgkltspttpqtiefqtdaaapidltvdystctqygsefsvttnaaDGYASatqngVQVDDDgkvyatysnGER 306
Cdd:PRK12816  156 ----------------------------------------------------EGIVS-----VKVGED---------NDP 169

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 307 MLQGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGSGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVI 386
Cdd:PRK12816  170 IELGQIELYRFVNPAGLSAIGKNLFKETIASGQEIPGIPGSEGFGRVLQGFLEMSNVSIVEEMVTMIVAQRAYEINSKAI 249


                  ...
gi 1730525340 387 ATS 389
Cdd:PRK12816  250 QTS 252
flgF PRK12690
flagellar hook-basal body complex protein;
20-125 1.01e-14

flagellar hook-basal body complex protein;


Pssm-ID: 183685 [Multi-domain]  Cd Length: 238  Bit Score: 73.18  E-value: 1.01e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  20 ISNNIANAGTVGYKSMTTQFSAMYA--GSQAMGVSMA-GTAQSISRG-GSLVSTGNALDLAINDDGFFVTCDSAGNiSYT 95
Cdd:PRK12690   22 VANNIANASTTGFRREGLVFSEYVKslDSGEASLSMArASGRQTDLEqGGLTQTGGQFDFAIEGEGFFMVETPQGE-RLT 100

                          90       100       110
                  ....*....|....*....|....*....|
gi 1730525340  96 RAGSFETDKNGYIVNAsgaylQGYPVDDTG 125
Cdd:PRK12690  101 RAGSFTPNAEGELVDP-----DGNRLLDAG 125
Flg_bbr_C pfam06429
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ...
 321-398 1.22e-14

Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.


Pssm-ID: 428939 [Multi-domain]  Cd Length: 74  Bit Score: 68.45  E-value: 1.22e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1730525340 321 NGLEAVSGTAWVQTgeSGTPLIGVpgsGTCGTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQ 398
Cdd:pfam06429   1 AGLEKGGDNLFRET--DGAPILGA---GADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQ 73
flgF PRK12640
flagellar basal body rod protein FlgF; Reviewed
 5-113 1.32e-14

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 183642 [Multi-domain]  Cd Length: 246  Bit Score: 72.97  E-value: 1.32e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   5 IAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYA---GSQAMGVSMAGTAQSISRGGSLVSTGNALDLAINDDG 81
Cdd:PRK12640    7 TAMSGASQNLNQQAVVANNLANASTPGFRADLAQARAVPVfgeGLPTRVFALASTPGADFSPGPLQTTGRPLDVALQGDG 86

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1730525340  82 FFVTCDSAGNISYTRAGSFETDKNGYIVNASG 113
Cdd:PRK12640   87 WLAVQAPDGSEAYTRNGSLQVDANGQLRTANG 118
flgG PRK12818
flagellar basal body rod protein FlgG; Reviewed
 6-142 5.51e-14

flagellar basal body rod protein FlgG; Reviewed


Pssm-ID: 183768 [Multi-domain]  Cd Length: 256  Bit Score: 71.27  E-value: 5.51e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   6 AATGLNAVNEQLDGISNNIANAGTVGYKS---MTTQFSAMYA----------------GSQAMGVSMAGTAqSISRGGSL 66
Cdd:PRK12818    8 AVSGMITLEAKQDVITNNLANVNTVGYKSdnlAFKSFEDVLIenydkkvgnknvkniiGGLSMGSKIDEVN-TLFTQGII 86

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1730525340  67 VSTGNALDLAINDDGFFVTCDSAGNISYTRAGSFETDKNGYIVNASGAYLQGYpvddtgTLQTGTVTDIQIKTGNI 142
Cdd:PRK12818   87 KSTDKPTDFAIQGRGFFTVERNAGNNYYTRDGHFHVDTQGYLVNDSGYYVLGR------NNATGAREPINVGNGKF 156
flgF PRK12689
flagellar basal-body rod protein FlgF;
12-137 1.26e-13

flagellar basal-body rod protein FlgF;


Pssm-ID: 183684 [Multi-domain]  Cd Length: 253  Bit Score: 70.16  E-value: 1.26e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  12 AVNEQLDGISNNIANAGTVGYKSMTTQFSAmYAGSQAMGVSMAGTAQSIS----RG-------GSLVSTGNALDLAINDD 80
Cdd:PRK12689   14 ALERQLDVVANNVANVNTNGFKARSSLFQE-YLMPGAHEDNFQRPDRRVSyvqdRGtpldlsqGPLEQTKNPLDVAIDGD 92

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  81 GFFVTCDSAGNiSYTRAGSFETDKNGYIVNASgaylqGYPVDDTG---TLQTgTVTDIQI 137
Cdd:PRK12689   93 AFLAVQTPQGE-RYTRDGALEINAQGQLVTSD-----GYPVLGTGgpiTFQP-TDTGIAI 145
FlaE pfam07559
Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar ...
 179-281 3.36e-13

Flagellar basal body protein FlaE; This family consists of several bacterial FlaE flagellar proteins. These proteins are part of the flageller basal body rod complex.


Pssm-ID: 429537 [Multi-domain]  Cd Length: 94  Bit Score: 65.12  E-value: 3.36e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 179 TDSYTTTVYDSLGNEHSVCQYFTKT--SDNTWEVQYTFDGQQQTGVPATTltfdpnTGKLTSPTTPQTIEFQTdaaapID 256
Cdd:pfam07559   1 NYSTSVTVYDSLGNSHTLTVYFVKTatGPNTWEVYVTVDGEVGDGDGTAG------TASTAGGLMTGTLTFDS-----IT 69

                          90       100
                  ....*....|....*....|....*
gi 1730525340 257 LTVDYSTCTQYGSEFSVTTNAADGY 281
Cdd:pfam07559  70 LDFGLTGSTQYASAFSVTSLSQDGY 94
flgF PRK12642
flagellar basal-body rod protein FlgF;
5-172 4.33e-13

flagellar basal-body rod protein FlgF;


Pssm-ID: 237153 [Multi-domain]  Cd Length: 241  Bit Score: 68.54  E-value: 4.33e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   5 IAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSMAGTAQSI--SRGGSLVSTGNALDLAINDDGF 82
Cdd:PRK12642    7 VALSSQMALEKRLDTIADNVANVNTVGFRATEVKFDTVVSDTASKKVAFVSQGKSYlsTEAGPLTKTGNPLDFAVKGDAW 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  83 FVTCDSAGNIsYTRAGSFETDKNGYIVNasgayLQGYPVDDTGTlqtgtvTDIQIKTGNIPAQASSSLTFTANfDASDDA 162
Cdd:PRK12642   87 FSFDTPAGQV-YTRDGRFTMTSTGELVS-----VTGYPVLDAGG------APIQLNPGGGEPTIGADGAIYQN-GVQVGA 153

                         170
                  ....*....|
gi 1730525340 163 IDRTTVPFDA 172
Cdd:PRK12642  154 IGLFEIDADA 163
flgF TIGR02490
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ...
 289-380 1.62e-09

flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274160 [Multi-domain]  Cd Length: 89  Bit Score: 54.17  E-value: 1.62e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 289 VQVDDDGKVYAtysNGERMlqGQVVLATFPNENGLEAVSGTAWVQTGESGTPLIGVPGsgtcgtLSSGVLESSNVDITSE 368
Cdd:TIGR02490   9 ITIGADGTISQ---DGEEV--GRLGLVNFDNPNQLQREGDGLFRATGGGPAPADSNVR------VVQGYLEGSNVNAVSE 77

                          90
                  ....*....|..
gi 1730525340 369 LVNLMTAQRNYQ 380
Cdd:TIGR02490  78 MVDMIEAQRAYE 89
flgF PRK12641
flagellar basal-body rod protein FlgF;
10-121 5.58e-07

flagellar basal-body rod protein FlgF;


Pssm-ID: 105809 [Multi-domain]  Cd Length: 252  Bit Score: 50.33  E-value: 5.58e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  10 LNAVNEQLDG---ISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSMAGTAQSISRG-GSLVSTGNALDLAINDDGFFVT 85
Cdd:PRK12641    9 MIAANKLLEKqaiIANNLANISTTGFKEKFILAIQNHNVKNLYNSDKKITKEYYNLSpGTLRYTGRNLDLFIKDNGWLTI 88

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1730525340  86 CDSAGNISYTRAGSFETDKNGYIVnasgayLQGYPV 121
Cdd:PRK12641   89 KDTNGQEAYTKNGHLKINSKRKLT------VQNNEV 118
FlgC COG1558
Flagellar basal body rod protein FlgC [Cell motility];
361-392 5.04e-06

Flagellar basal body rod protein FlgC [Cell motility];


Pssm-ID: 441166 [Multi-domain]  Cd Length: 135  Bit Score: 45.49  E-value: 5.04e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1730525340 361 SNVDITSELVNLMTAQRNYQANTKVIATSTQL 392
Cdd:COG1558    95 PNVNVVEEMVDMISASRSYEANVEVINTAKSM 126
flgG PRK12819
flagellar basal-body rod protein FlgG;
5-118 1.97e-05

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 45.64  E-value: 1.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340   5 IAATGLNAVNEQLDGISNNIANAGTVGYK--SMTTQF------------SAMYAGSQAMGVSMAGTAQSISRGGSLVsTG 70
Cdd:PRK12819    6 IGSMGMMNYMQRINVHSNNVANAQTTGFKaeNMTSKVfdvqdtyrrgdgAVTNIGSVDYAVVPAATHVNLVQGNIQM-TN 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1730525340  71 NALDLAINDD-----GFFVTCDSaGNISYTRAGSFETDKNGYIVNASGAYLQG 118
Cdd:PRK12819   85 SDTDFFLDDGpagtsSFFVTSKN-GETFLTRDGSFTLNSDRYLQTASGAFVMG 136
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 362-392 8.70e-05

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 42.12  E-value: 8.70e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1730525340 362 NVDITSELVNLMTAQRNYQANTKVIATSTQL 392
Cdd:PRK05681   95 NVNVVVEMVDMISASRSYEANVEVLNAAKSM 125
FlgC TIGR01395
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ...
 356-392 9.28e-05

flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 130462 [Multi-domain]  Cd Length: 135  Bit Score: 41.96  E-value: 9.28e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1730525340 356 GVLESSNVDITSELVNLMTAQRNYQANTKVIATSTQL 392
Cdd:TIGR01395  90 GYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSM 126
flgF PRK12643
flagellar basal body rod protein FlgF; Reviewed
 21-121 2.28e-04

flagellar basal body rod protein FlgF; Reviewed


Pssm-ID: 139117 [Multi-domain]  Cd Length: 209  Bit Score: 42.14  E-value: 2.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340  21 SNNIANAGTVGYKSmttQFSAMYA----GSQAMGVSMAGTAQ---SISRGgSLVSTGNALDLAINDDGFFVTCDSAGNIS 93
Cdd:PRK12643   23 ANNLANASTPGFRA---QLAAMRAvpidGPSLATRTMVTTSTpgvDISQG-TMNFSGRPLDVALQQDGYLAVQLPDGSEA 98

                          90       100
                  ....*....|....*....|....*...
gi 1730525340  94 YTRAGSFETDKNGYIVnasgayLQGYPV 121
Cdd:PRK12643   99 YTRNGNIQISANGQMT------VQGYPL 120
flgC PRK05681
flagellar basal body rod protein FlgC; Reviewed
 2-55 3.60e-04

flagellar basal body rod protein FlgC; Reviewed


Pssm-ID: 235556 [Multi-domain]  Cd Length: 135  Bit Score: 40.19  E-value: 3.60e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1730525340   2 SYEIAATGLNAVNEQLDGISNNIANAGTVG------YKSMTTQF-SAMYAGSQAMGVSMAG 55
Cdd:PRK05681    6 SFNIAGSGLSAQSQRLNVISSNIANADSTAapdgdpYRRKQVVFaAELDPGQGTGGVKVAK 66
flgG PRK12819
flagellar basal-body rod protein FlgG;
351-386 5.99e-04

flagellar basal-body rod protein FlgG;


Pssm-ID: 183769 [Multi-domain]  Cd Length: 257  Bit Score: 41.40  E-value: 5.99e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1730525340 351 GTLSSGVLESSNVDITSELVNLMTAQRNYQANTKVI 386
Cdd:PRK12819  206 GIVKNGMLENSNVDMTKEMADLMTDQRMIQASQRVM 241
flgC PRK12629
flagellar basal body rod protein FlgC; Provisional
 295-392 9.09e-04

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183634  Cd Length: 135  Bit Score: 39.29  E-value: 9.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 295 GKVYATYSNGERMLQGQvvlaTFPNENGLEAVSGTAWVQTG-------ESGTPLIGvpgsgtcgtlSSGVLESSNVDITS 367
Cdd:PRK12629   36 GSAEATYKPIEPIFQAQ----QSRQDPSLTSVNVKEITTTNappirryEPGHPLAD----------ADGYVFSPDVDPVS 101

                          90       100
                  ....*....|....*....|....*
gi 1730525340 368 ELVNLMTAQRNYQANTKVIATSTQL 392
Cdd:PRK12629  102 QMVNMISASRNYQAGVEMLNTAKEL 126
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
1-62 2.38e-03

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 39.86  E-value: 2.38e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1730525340   1 MSYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMGVSMAG-TAQSISR 62
Cdd:COG1256     4 SALNIALSGLNAAQRALDVTSHNIANANTPGYSRQRVVLSAAGPTATGAGQVGTGvRVTGIRR 66
flgK PRK07191
flagellar hook-associated protein FlgK; Validated
 361-400 2.39e-03

flagellar hook-associated protein FlgK; Validated


Pssm-ID: 180871 [Multi-domain]  Cd Length: 456  Bit Score: 39.81  E-value: 2.39e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1730525340 361 SNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400
Cdd:PRK07191  417 SGVNNDEEAMNLMEYQRAYQSNMKVIATGDKLFSDLLALV 456
FlgB COG1815
Flagellar basal body rod protein FlgB [Cell motility];
5-56 2.96e-03

Flagellar basal body rod protein FlgB [Cell motility];


Pssm-ID: 441420  Cd Length: 135  Bit Score: 37.58  E-value: 2.96e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1730525340   5 IAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYA---GSQAMGVSMAGT 56
Cdd:COG1815    11 LLEKALDLRSLRQEVIASNIANADTPGYKARDVDFEAALKaalGGGSAGLALATT 65
FlgK COG1256
Flagellar hook-associated protein FlgK [Cell motility];
361-400 4.54e-03

Flagellar hook-associated protein FlgK [Cell motility];


Pssm-ID: 440868 [Multi-domain]  Cd Length: 479  Bit Score: 39.09  E-value: 4.54e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1730525340 361 SNVDITSELVNLMTAQRNYQANTKVIATSTQLDDALFQAM 400
Cdd:COG1256   439 SGVNLDEEMANLIKFQQAYQANARVITTADEMLDTLLNIV 478
flgC PRK12632
flagellar basal body rod protein FlgC; Provisional
 2-50 6.14e-03

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183637 [Multi-domain]  Cd Length: 130  Bit Score: 36.71  E-value: 6.14e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1730525340   2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYKSMTTQFSAMYAGSQAMG 50
Cdd:PRK12632    7 SLSVSASGMRAQALRLRHVSENIANADTPGYRRKTVSFQEARDFDPGSG 55
flgC PRK12632
flagellar basal body rod protein FlgC; Provisional
 314-398 6.14e-03

flagellar basal body rod protein FlgC; Provisional


Pssm-ID: 183637 [Multi-domain]  Cd Length: 130  Bit Score: 36.71  E-value: 6.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1730525340 314 LATFPNENGLEAVSGTawVQTG-----ESGTPLIGVPGSGTCGtlSSGVLESSNVDITSELVNLMTAQRNYQANTKVIAT 388
Cdd:PRK12632   41 TVSFQEARDFDPGSGL--VSTGpvrldRSELPRIYDPSHPLAD--ETGYYDGSNVDLVVEIADAREAQRSYEANLRMFDQ 116

                          90
                  ....*....|
gi 1730525340 389 STQLDDALFQ 398
Cdd:PRK12632  117 ARQMSSSLLD 126
Flg_bb_rod pfam00460
Flagella basal body rod protein;
4-32 6.53e-03

Flagella basal body rod protein;


Pssm-ID: 459821 [Multi-domain]  Cd Length: 30  Bit Score: 34.08  E-value: 6.53e-03
                          10        20
                  ....*....|....*....|....*....
gi 1730525340   4 EIAATGLNAVNEQLDGISNNIANAGTVGY 32
Cdd:pfam00460   2 YTAVSALNAQQIRLDVIANNIANANTPGY 30
flgB PRK12623
flagellar basal body rod protein FlgB; Provisional
 2-33 8.91e-03

flagellar basal body rod protein FlgB; Provisional


Pssm-ID: 183630  Cd Length: 131  Bit Score: 36.31  E-value: 8.91e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1730525340   2 SYEIAATGLNAVNEQLDGISNNIANAGTVGYK 33
Cdd:PRK12623   12 VYDLLKKGLDASSYRGKVISNNIANVNTKGYK 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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