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Conserved domains on  [gi|2095223079|gb|UAS05271|]
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protoporphyrinogen oxidase [Staphylococcus pseudintermedius]

Protein Classification

protoporphyrinogen oxidase( domain architecture ID 11485647)

protoporphyrinogen oxidase is an FAD-dependent enzyme that catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX, playing an important part in the heme/chlorophyll biosynthetic pathway

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK11883 PRK11883
protoporphyrinogen oxidase; Reviewed
4-465 0e+00

protoporphyrinogen oxidase; Reviewed


:

Pssm-ID: 237009 [Multi-domain]  Cd Length: 451  Bit Score: 601.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079   4 VAIIGAGITGLSSAYFIKQKYPHVNVTIYEATDRPGGKIKTVHHDGYTIELGPESYLGRKTILTEVAKAVGMTDDdIVTN 83
Cdd:PRK11883    3 VAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLEDE-LVAN 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079  84 ETGQSYIFANDTLYPIPGGAILGVPTDIKPFMSTKLISMKGKLRALKDLTIKPIEMEnEDMSVGEFFRTRLGDEVLENLI 163
Cdd:PRK11883   82 TTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPG-QDQSVGAFFRRRFGDEVVENLI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 164 EPLLSGIYGTDIDVLSLMSTFPNFKALEEEHGSIIKGMQHVKKERQQqaqhnqqGPQGQFKQFRHGLNDFVNKLEQWLKA 243
Cdd:PRK11883  161 EPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKK-------KTKGVFGTLKGGLQSLIEALEEKLPA 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 244 HdvTFHYETPVHDLIGTQKGYYVELNDESRSFYDGVIVATPHQVFREWFSTDPMFDYFSKLEASSVATIVFAFDEANiEN 323
Cdd:PRK11883  234 G--TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFVAPPAFALFKTIPSTSVATVALAFPESA-TN 310
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 324 TSDGTGFVVARTSATDITACTWTTKKWPHTTPEGKVLIRAYIGKQGDNIVNEKTDEELVAIAKNDLQQMMTFHGEPDFTI 403
Cdd:PRK11883  311 LPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGITGDPEFTI 390
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2095223079 404 VNKMPYVSPQYHVGHIARIKAIQQHIcDNYQHLQITGAPFEAVGLPDCIRQAETAVKQLLSR 465
Cdd:PRK11883  391 VQRWKEAMPQYGVGHIERVAELRAGL-PHYPGLYVAGASFEGVGLPDCIAQAKRAAARLLAE 451
 
Name Accession Description Interval E-value
PRK11883 PRK11883
protoporphyrinogen oxidase; Reviewed
4-465 0e+00

protoporphyrinogen oxidase; Reviewed


Pssm-ID: 237009 [Multi-domain]  Cd Length: 451  Bit Score: 601.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079   4 VAIIGAGITGLSSAYFIKQKYPHVNVTIYEATDRPGGKIKTVHHDGYTIELGPESYLGRKTILTEVAKAVGMTDDdIVTN 83
Cdd:PRK11883    3 VAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLEDE-LVAN 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079  84 ETGQSYIFANDTLYPIPGGAILGVPTDIKPFMSTKLISMKGKLRALKDLTIKPIEMEnEDMSVGEFFRTRLGDEVLENLI 163
Cdd:PRK11883   82 TTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPG-QDQSVGAFFRRRFGDEVVENLI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 164 EPLLSGIYGTDIDVLSLMSTFPNFKALEEEHGSIIKGMQHVKKERQQqaqhnqqGPQGQFKQFRHGLNDFVNKLEQWLKA 243
Cdd:PRK11883  161 EPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKK-------KTKGVFGTLKGGLQSLIEALEEKLPA 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 244 HdvTFHYETPVHDLIGTQKGYYVELNDESRSFYDGVIVATPHQVFREWFSTDPMFDYFSKLEASSVATIVFAFDEANiEN 323
Cdd:PRK11883  234 G--TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFVAPPAFALFKTIPSTSVATVALAFPESA-TN 310
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 324 TSDGTGFVVARTSATDITACTWTTKKWPHTTPEGKVLIRAYIGKQGDNIVNEKTDEELVAIAKNDLQQMMTFHGEPDFTI 403
Cdd:PRK11883  311 LPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGITGDPEFTI 390
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2095223079 404 VNKMPYVSPQYHVGHIARIKAIQQHIcDNYQHLQITGAPFEAVGLPDCIRQAETAVKQLLSR 465
Cdd:PRK11883  391 VQRWKEAMPQYGVGHIERVAELRAGL-PHYPGLYVAGASFEGVGLPDCIAQAKRAAARLLAE 451
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
1-466 1.79e-152

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 440.81  E-value: 1.79e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079   1 MTNVAIIGAGITGLSSAYFIKQkyPHVNVTIYEATDRPGGKIKTVHHDGYTIELGPESYLGRKTILTEVAKAVGMtDDDI 80
Cdd:COG1232     1 MKRVAVIGGGIAGLTAAYRLAK--AGHEVTVLEASDRVGGLIRTVEVDGFRIDRGPHSFLTRDPEVLELLRELGL-GDEL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079  81 VTNETGQSYIFANDTLYPIPGGAIlgvptdikPFMSTKLISMKGKLRALKDLTIKPIEmENEDMSVGEFFRTRLGDEVLE 160
Cdd:COG1232    78 VWPNTRKSYIYYGGKLHPLPQGPL--------ALLRSPLLSLAGKLRALLELLAPRRP-PGEDESLAEFVRRRFGREVYE 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 161 NLIEPLLSGIYGTDIDVLSLMSTFPNFKALEEEHGSIIKGMQHVKKERqqqaqhnqqGPQGQFKQFRHGLNDFVNKLEQW 240
Cdd:COG1232   149 RLVEPLLEGVYAGDPDELSADWAFPRLKRLELEHGSLIKGALALRKGA---------KAGEVFGYLRGGLGTLVEALAEA 219
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 241 LKAHDVtfHYETPVHDLIGTQKGYYVELNDESRSFYDGVIVATPHQVFREWFSTDP--MFDYFSKLEASSVATIVFAFDE 318
Cdd:COG1232   220 LEAGEI--RLGTRVTAIEREGGGWRVTTSDGETIEADAVVSATPAPALARLLAPLPpeVAAALAGIPYASVAVVALGFDR 297
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 319 ANIENTsDGTGFVVARTSATDITACTWTTKKWPHTTPEGKVLIRAYIGKQGDNIVNEKTDEELVAIAKNDLQQMMTFHGE 398
Cdd:COG1232   298 PDLPPP-DGFGWLVPRDEGVPILAVTFSSNKWPHRAPDGKVLLRLEVGGAGDPELWQLSDEELVALALADLRKLLGIDAE 376
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2095223079 399 PDFTIVNKMPYVSPQYHVGHIARIKAIQQHIcDNYQHLQITGAPFEAVGLPDCIRQAETAVKQLLSRI 466
Cdd:COG1232   377 PVDTRVVRWPKAYPQYTVGHLERVAAIREAL-AALPGLYLAGRAYDGVGLPDCIRSGREAAERILAEL 443
proto_IX_ox TIGR00562
protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a ...
1-464 3.18e-119

protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 213540 [Multi-domain]  Cd Length: 462  Bit Score: 356.84  E-value: 3.18e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079   1 MTNVAIIGAGITGLSSAYFIKQKYPH--VNVTIYEATDRPGGKIKTVHHDGYTIELGPESYLGRKTILTEVAKAVGMtDD 78
Cdd:TIGR00562   2 KKHVVIIGGGISGLCAAYYLEKEIPElpVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGL-EH 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079  79 DIVTNETGQSYIFANDtlypipgGAILGVPTDIKPFMSTKLISMKGKLRALKDLTIKpiEMENEDMSVGEFFRTRLGDEV 158
Cdd:TIGR00562  81 VLVSDATGQRYVLVNR-------GKLMPVPTKIAPFVKTGLFSLGGKLRAGMDFIRP--ASPGKDESVEEFVRRRFGDEV 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 159 LENLIEPLLSGIYGTDIDVLSLMSTFPNFKALEEEHGSIIKGMQHVKKERQQQAQHNQQGPQGQ-FKQFRHGLNDFVNKL 237
Cdd:TIGR00562 152 VENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQdFQTLATGLETLPEEI 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 238 EQWLKahdVTFHYE-TPVHDLIGTQKGYYVELNDESRSFYDGVIVATPHQVFREWFSTD--PMFDYFSKLEASSVATIVF 314
Cdd:TIGR00562 232 EKRLK---LTKVYKgTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAGLLSELsnSASSHLDKIHSPPVANVNL 308
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 315 AFDEANIENTSDGTGFVVARTSATDITACTWTTKKWPHTTPEGKVLIRAYIGKQGDNIVNEKTDEELVAIAKNDLQQMMT 394
Cdd:TIGR00562 309 GFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLN 388
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 395 FHGEPDFTIVNKMPYVSPQYHVGHIARIKAIQQHICDNYQHLQITGAPFEAVGLPDCIRQAETAVKQLLS 464
Cdd:TIGR00562 389 INNEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEGVGIPDCIDQGKAAASDVLT 458
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
11-463 4.11e-39

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 146.87  E-value: 4.11e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079  11 ITGLSSAYFIKQKypHVNVTIYEATDRPGGKIKTVHHDGYTIELGPESYLGRKTILTEVAKAVGMTDDDIVTN-ETGQSY 89
Cdd:pfam01593   1 LAGLAAARELLRA--GHDVTVLEARDRVGGRIRTVRDDGFLIELGAMWFHGAQPPLLALLKELGLEDRLVLPDpAPFYTV 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079  90 IFANDTLYPipgGAILGVPTDIKPFMST-KLISMKGKLR------ALKDLTIKPIEMENEDMSVGEFFRTRLGD-EVLEN 161
Cdd:pfam01593  79 LFAGGRRYP---GDFRRVPAGWEGLLEFgRLLSIPEKLRlglaalASDALDEFDLDDFSLAESLLFLGRRGPGDvEVWDR 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 162 LIE-------PLLSGIYGTDIDVLSLMSTFPNFKALEEEHGSIIKGmqhvkkerqqqaqhnqqgpqgqfkqfRHGLNDFV 234
Cdd:pfam01593 156 LIDpelfaalPFASGAFAGDPSELSAGLALPLLWALLGEGGSLLLP--------------------------RGGLGALP 209
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 235 NKLEQwlKAHDVTFHYETPVHDLIGTQKGYYVELNDESRSFYDGVIVATPHQVFREWFSTDPMFDY----FSKLEASSVA 310
Cdd:pfam01593 210 DALAA--QLLGGDVRLNTRVRSIDREGDGVTVTLTDGEVIEADAVIVTVPLGVLKRILFTPPLPPEkaraIRNLGYGPVN 287
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 311 TIVFAFDEANIENtsDGTGFVVARTSATDITACTWTTkkWPHTTPEGK-VLIRAYIGKQG-DNIVNEKTDEELVAIAKND 388
Cdd:pfam01593 288 KVHLEFDRKFWPD--LGLLGLLSELLTGLGTAFSWLT--FPNRAPPGKgLLLLVYVGPGDrARELEGLSDEELLQAVLRD 363
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 389 LQQMMTFHG-EPDFTIVN--------KMPYVSPQYHVGHIARIKAIQQ-----HICDNYQHLQITGapfeavGLPDCIRQ 454
Cdd:pfam01593 364 LRKLFGEEApEPLRVLVSdwhtdpwpRGSYSLPQYGPGHDDYRPLARTpdpglFFAGEHTSTGYPG------TVEGAIES 437

                  ....*....
gi 2095223079 455 AETAVKQLL 463
Cdd:pfam01593 438 GRRAARAVL 446
 
Name Accession Description Interval E-value
PRK11883 PRK11883
protoporphyrinogen oxidase; Reviewed
4-465 0e+00

protoporphyrinogen oxidase; Reviewed


Pssm-ID: 237009 [Multi-domain]  Cd Length: 451  Bit Score: 601.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079   4 VAIIGAGITGLSSAYFIKQKYPHVNVTIYEATDRPGGKIKTVHHDGYTIELGPESYLGRKTILTEVAKAVGMTDDdIVTN 83
Cdd:PRK11883    3 VAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLEDE-LVAN 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079  84 ETGQSYIFANDTLYPIPGGAILGVPTDIKPFMSTKLISMKGKLRALKDLTIKPIEMEnEDMSVGEFFRTRLGDEVLENLI 163
Cdd:PRK11883   82 TTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPG-QDQSVGAFFRRRFGDEVVENLI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 164 EPLLSGIYGTDIDVLSLMSTFPNFKALEEEHGSIIKGMQHVKKERQQqaqhnqqGPQGQFKQFRHGLNDFVNKLEQWLKA 243
Cdd:PRK11883  161 EPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKK-------KTKGVFGTLKGGLQSLIEALEEKLPA 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 244 HdvTFHYETPVHDLIGTQKGYYVELNDESRSFYDGVIVATPHQVFREWFSTDPMFDYFSKLEASSVATIVFAFDEANiEN 323
Cdd:PRK11883  234 G--TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSLFVAPPAFALFKTIPSTSVATVALAFPESA-TN 310
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 324 TSDGTGFVVARTSATDITACTWTTKKWPHTTPEGKVLIRAYIGKQGDNIVNEKTDEELVAIAKNDLQQMMTFHGEPDFTI 403
Cdd:PRK11883  311 LPDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGITGDPEFTI 390
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2095223079 404 VNKMPYVSPQYHVGHIARIKAIQQHIcDNYQHLQITGAPFEAVGLPDCIRQAETAVKQLLSR 465
Cdd:PRK11883  391 VQRWKEAMPQYGVGHIERVAELRAGL-PHYPGLYVAGASFEGVGLPDCIAQAKRAAARLLAE 451
HemY COG1232
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ...
1-466 1.79e-152

Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440845 [Multi-domain]  Cd Length: 443  Bit Score: 440.81  E-value: 1.79e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079   1 MTNVAIIGAGITGLSSAYFIKQkyPHVNVTIYEATDRPGGKIKTVHHDGYTIELGPESYLGRKTILTEVAKAVGMtDDDI 80
Cdd:COG1232     1 MKRVAVIGGGIAGLTAAYRLAK--AGHEVTVLEASDRVGGLIRTVEVDGFRIDRGPHSFLTRDPEVLELLRELGL-GDEL 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079  81 VTNETGQSYIFANDTLYPIPGGAIlgvptdikPFMSTKLISMKGKLRALKDLTIKPIEmENEDMSVGEFFRTRLGDEVLE 160
Cdd:COG1232    78 VWPNTRKSYIYYGGKLHPLPQGPL--------ALLRSPLLSLAGKLRALLELLAPRRP-PGEDESLAEFVRRRFGREVYE 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 161 NLIEPLLSGIYGTDIDVLSLMSTFPNFKALEEEHGSIIKGMQHVKKERqqqaqhnqqGPQGQFKQFRHGLNDFVNKLEQW 240
Cdd:COG1232   149 RLVEPLLEGVYAGDPDELSADWAFPRLKRLELEHGSLIKGALALRKGA---------KAGEVFGYLRGGLGTLVEALAEA 219
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 241 LKAHDVtfHYETPVHDLIGTQKGYYVELNDESRSFYDGVIVATPHQVFREWFSTDP--MFDYFSKLEASSVATIVFAFDE 318
Cdd:COG1232   220 LEAGEI--RLGTRVTAIEREGGGWRVTTSDGETIEADAVVSATPAPALARLLAPLPpeVAAALAGIPYASVAVVALGFDR 297
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 319 ANIENTsDGTGFVVARTSATDITACTWTTKKWPHTTPEGKVLIRAYIGKQGDNIVNEKTDEELVAIAKNDLQQMMTFHGE 398
Cdd:COG1232   298 PDLPPP-DGFGWLVPRDEGVPILAVTFSSNKWPHRAPDGKVLLRLEVGGAGDPELWQLSDEELVALALADLRKLLGIDAE 376
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2095223079 399 PDFTIVNKMPYVSPQYHVGHIARIKAIQQHIcDNYQHLQITGAPFEAVGLPDCIRQAETAVKQLLSRI 466
Cdd:COG1232   377 PVDTRVVRWPKAYPQYTVGHLERVAAIREAL-AALPGLYLAGRAYDGVGLPDCIRSGREAAERILAEL 443
proto_IX_ox TIGR00562
protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a ...
1-464 3.18e-119

protoporphyrinogen oxidase; This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 213540 [Multi-domain]  Cd Length: 462  Bit Score: 356.84  E-value: 3.18e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079   1 MTNVAIIGAGITGLSSAYFIKQKYPH--VNVTIYEATDRPGGKIKTVHHDGYTIELGPESYLGRKTILTEVAKAVGMtDD 78
Cdd:TIGR00562   2 KKHVVIIGGGISGLCAAYYLEKEIPElpVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGL-EH 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079  79 DIVTNETGQSYIFANDtlypipgGAILGVPTDIKPFMSTKLISMKGKLRALKDLTIKpiEMENEDMSVGEFFRTRLGDEV 158
Cdd:TIGR00562  81 VLVSDATGQRYVLVNR-------GKLMPVPTKIAPFVKTGLFSLGGKLRAGMDFIRP--ASPGKDESVEEFVRRRFGDEV 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 159 LENLIEPLLSGIYGTDIDVLSLMSTFPNFKALEEEHGSIIKGMQHVKKERQQQAQHNQQGPQGQ-FKQFRHGLNDFVNKL 237
Cdd:TIGR00562 152 VENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQdFQTLATGLETLPEEI 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 238 EQWLKahdVTFHYE-TPVHDLIGTQKGYYVELNDESRSFYDGVIVATPHQVFREWFSTD--PMFDYFSKLEASSVATIVF 314
Cdd:TIGR00562 232 EKRLK---LTKVYKgTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAGLLSELsnSASSHLDKIHSPPVANVNL 308
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 315 AFDEANIENTSDGTGFVVARTSATDITACTWTTKKWPHTTPEGKVLIRAYIGKQGDNIVNEKTDEELVAIAKNDLQQMMT 394
Cdd:TIGR00562 309 GFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLN 388
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 395 FHGEPDFTIVNKMPYVSPQYHVGHIARIKAIQQHICDNYQHLQITGAPFEAVGLPDCIRQAETAVKQLLS 464
Cdd:TIGR00562 389 INNEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEGVGIPDCIDQGKAAASDVLT 458
PRK12416 PRK12416
protoporphyrinogen oxidase; Provisional
1-466 4.89e-90

protoporphyrinogen oxidase; Provisional


Pssm-ID: 183516  Cd Length: 463  Bit Score: 281.72  E-value: 4.89e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079   1 MTNVAIIGAGITGLSSAYFIKQKYPH----VNVTIYEATDRPGGKIKTVHHDGYTIELGPESYLGRKTILTEVAKAVGMT 76
Cdd:PRK12416    1 MKTVVVIGGGITGLSTMFYLEKLKKDynidLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079  77 DDdIVTNETGQSYIFANDTLYPIPGGAILGVPTDIKPFMSTKLISMKGKLRALKDLtIKPIEMENEDMSVGEFFRTRLGD 156
Cdd:PRK12416   81 EE-MVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDF-ITKNKEFTKDTSLALFLESFLGK 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 157 EVLENLIEPLLSGIYGTDIDVLSLMSTFPNFKALEEEHGSIIKGMQHVKKErqqqaqhNQQGPQGQFKQFRHGLNDFVNK 236
Cdd:PRK12416  159 ELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQ-------FQSAGNKKFVSFKGGLSTIIDR 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 237 LEQWLKahDVTFHYETPVHDLIGTQKGYYVELNDESRSFYDGVIVATPHQVFREWFSTDPMFDYFSKLEASSVATIVFAF 316
Cdd:PRK12416  232 LEEVLT--ETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAETLLQSNELNEQFHTFKNSSLISIYLGF 309
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 317 DEANIENTSDGTGFVVARTSATDITACTWTTKKWPHTTPEGKVLIRAYIgkQGDNIVNEK----TDEELVAIAKNDLQQM 392
Cdd:PRK12416  310 DILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFY--KSTNPVYETiknySEEELVRVALYDIEKS 387
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2095223079 393 MTFHGEPDFTIVNKMPYVSPQYHVGHIARIKAIQQHICDNYQHLQITGAPFEAVGLPDCIRQAETAVKQLLSRI 466
Cdd:PRK12416  388 LGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGVGIGACIGNGKNTANEIIATL 461
PLN02576 PLN02576
protoporphyrinogen oxidase
2-426 1.48e-57

protoporphyrinogen oxidase


Pssm-ID: 215314 [Multi-domain]  Cd Length: 496  Bit Score: 197.54  E-value: 1.48e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079   2 TNVAIIGAGITGLSSAYFIKQKYPhVNVTIYEATDRPGGKIKTVHHDGYTIELGPESYLGRKTILTEVAKAvGMTDDDIV 81
Cdd:PLN02576   13 KDVAVVGAGVSGLAAAYALASKHG-VNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPSDPELTSAVDS-GLRDDLVF 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079  82 TNETGQSYIFANDTLYPIPGGailgvPTDikpFMSTKLISMKGKLRA-LKDLTIKPIEMENEDMSVGEFFRTRLGDEVLE 160
Cdd:PLN02576   91 PDPQAPRYVVWNGKLRPLPSN-----PID---LPTFDLLSAPGKIRAgLGAFGWKRPPPPGREESVGEFVRRHLGDEVFE 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 161 NLIEPLLSGIYGTDIDVLSLMSTFPNFKALEEEHGSIIKGMQHVKKERQQQAQHNQQGP------QGQFKQFRHGLNDFV 234
Cdd:PLN02576  163 RLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPrlpkpkGQTVGSFRGGLQTLP 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 235 NKLEQWLKAHDVTFhyETPVHDLIGTQKGY----YVELNDESRSFYDGVIVATPHQVFREWFST-DPMF-DYFSKLEASS 308
Cdd:PLN02576  243 DALAKRLGKDKVKL--NWKVLSLSKNDDGGysltYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPkSPAAaDALPEFYYPP 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 309 VATIVFAFDEANI--ENTSDG--TGF--VVARTSATDITACTWTTKKWPHTTPEGKVLIRAYIGKQGDNIVNEKTDEELV 382
Cdd:PLN02576  321 VAAVTTSYPKEAVkrERLIDGplEGFgqLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGIASASEEELV 400
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*.
gi 2095223079 383 AIAKNDLQQMMTFHGEPDFTIVNKM--PYVSPQYHVGHIARIKAIQ 426
Cdd:PLN02576  401 EAVDRDLRKLLLKPGAPPPKVVGVRvwPKAIPQYLLGHLDVLEAAE 446
Amino_oxidase pfam01593
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ...
11-463 4.11e-39

Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.


Pssm-ID: 396255 [Multi-domain]  Cd Length: 446  Bit Score: 146.87  E-value: 4.11e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079  11 ITGLSSAYFIKQKypHVNVTIYEATDRPGGKIKTVHHDGYTIELGPESYLGRKTILTEVAKAVGMTDDDIVTN-ETGQSY 89
Cdd:pfam01593   1 LAGLAAARELLRA--GHDVTVLEARDRVGGRIRTVRDDGFLIELGAMWFHGAQPPLLALLKELGLEDRLVLPDpAPFYTV 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079  90 IFANDTLYPipgGAILGVPTDIKPFMST-KLISMKGKLR------ALKDLTIKPIEMENEDMSVGEFFRTRLGD-EVLEN 161
Cdd:pfam01593  79 LFAGGRRYP---GDFRRVPAGWEGLLEFgRLLSIPEKLRlglaalASDALDEFDLDDFSLAESLLFLGRRGPGDvEVWDR 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 162 LIE-------PLLSGIYGTDIDVLSLMSTFPNFKALEEEHGSIIKGmqhvkkerqqqaqhnqqgpqgqfkqfRHGLNDFV 234
Cdd:pfam01593 156 LIDpelfaalPFASGAFAGDPSELSAGLALPLLWALLGEGGSLLLP--------------------------RGGLGALP 209
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 235 NKLEQwlKAHDVTFHYETPVHDLIGTQKGYYVELNDESRSFYDGVIVATPHQVFREWFSTDPMFDY----FSKLEASSVA 310
Cdd:pfam01593 210 DALAA--QLLGGDVRLNTRVRSIDREGDGVTVTLTDGEVIEADAVIVTVPLGVLKRILFTPPLPPEkaraIRNLGYGPVN 287
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 311 TIVFAFDEANIENtsDGTGFVVARTSATDITACTWTTkkWPHTTPEGK-VLIRAYIGKQG-DNIVNEKTDEELVAIAKND 388
Cdd:pfam01593 288 KVHLEFDRKFWPD--LGLLGLLSELLTGLGTAFSWLT--FPNRAPPGKgLLLLVYVGPGDrARELEGLSDEELLQAVLRD 363
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 389 LQQMMTFHG-EPDFTIVN--------KMPYVSPQYHVGHIARIKAIQQ-----HICDNYQHLQITGapfeavGLPDCIRQ 454
Cdd:pfam01593 364 LRKLFGEEApEPLRVLVSdwhtdpwpRGSYSLPQYGPGHDDYRPLARTpdpglFFAGEHTSTGYPG------TVEGAIES 437

                  ....*....
gi 2095223079 455 AETAVKQLL 463
Cdd:pfam01593 438 GRRAARAVL 446
YobN COG1231
Monoamine oxidase [Amino acid transport and metabolism];
4-398 1.04e-22

Monoamine oxidase [Amino acid transport and metabolism];


Pssm-ID: 440844 [Multi-domain]  Cd Length: 440  Bit Score: 100.00  E-value: 1.04e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079   4 VAIIGAGITGLSSAYFIKQKypHVNVTIYEATDRPGGKIKTVHHD--GYTIELGPESYLGRKTILTEVAKAVGMTDDDIV 81
Cdd:COG1231    10 VVIVGAGLAGLAAARELRKA--GLDVTVLEARDRVGGRVWTLRFGddGLYAELGAMRIPPSHTNLLALARELGLPLEPFP 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079  82 tNETGQSYIFANdtlypipggailGVPTDIKPFMSTKLISMKGKLRALKDL----TIKPIEMENED-MSVGEFFRTRLGD 156
Cdd:COG1231    88 -NENGNALLYLG------------GKRVRAGEIAADLRGVAELLAKLLRALaaalDPWAHPAAELDrESLAEWLRRNGAS 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 157 EVLENLIEPLLSGIYGTDIDVLSLMStfpnfkALEEEHGsiikgmqhvkkerqqqaqhnqQGPQGQFKQFRHGLNDFVNK 236
Cdd:COG1231   155 PSARRLLGLLGAGEYGADPDELSLLD------LLRYAAS---------------------AGGGAQQFRIVGGMDQLPRA 207
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 237 LEQWLKAHdvtFHYETPVHDLIGTQKGYYVELNDESRSFYDGVIVATPHQVFREwFSTDPMFDY-----FSKLEASSVAT 311
Cdd:COG1231   208 LAAELGDR---IRLGAPVTRIRQDGDGVTVTTDDGGTVRADAVIVTVPPSVLRR-IEFDPPLPAakraaIQRLPYGAAIK 283
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 312 IVFAFDEA--NIENTSDGTGFvvartSATDITACTWTTkkwpHTTPEGKVLIRAYIGkqGDN--IVNEKTDEELVAIAKN 387
Cdd:COG1231   284 VFLQFDRPfwEEDGLYGGISL-----TDLPIRQTWYPS----NGPDGGAGVLLGYVG--GDDarALAALSPEERVAAALE 352
                         410
                  ....*....|.
gi 2095223079 388 DLQQMmtfHGE 398
Cdd:COG1231   353 QLARI---FGV 360
PRK07233 PRK07233
hypothetical protein; Provisional
3-429 1.71e-21

hypothetical protein; Provisional


Pssm-ID: 235977 [Multi-domain]  Cd Length: 434  Bit Score: 96.49  E-value: 1.71e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079   3 NVAIIGAGITGLSSAYFIkQKYPHvNVTIYEATDRPGGKIKTVHHDGYTIElgpESY----LGRKTILtEVAKAVGMtDD 78
Cdd:PRK07233    1 KIAIVGGGIAGLAAAYRL-AKRGH-EVTVFEADDQLGGLAASFEFGGLPIE---RFYhhifKSDEALL-ELLDELGL-ED 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079  79 DIVTNETGQSYiFANDTLYPipggaiLGVPTDIKPFmstKLISMKGKLR-ALKDLTIKPIE--MENEDMSVGEFFRTRLG 155
Cdd:PRK07233   74 KLRWRETKTGY-YVDGKLYP------LGTPLELLRF---PHLSLIDKFRlGLLTLLARRIKdwRALDKVPAEEWLRRWSG 143
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 156 DEVLENLIEPLLSGIYGTDIDVLS---LMSTfpnfkaleeehgsiIKGMQHVKKERQqqaqhnqqgpQGQFKQFRHGLND 232
Cdd:PRK07233  144 EGVYEVFWEPLLESKFGDYADDVSaawLWSR--------------IKRRGNRRYSLF----------GEKLGYLEGGFAT 199
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 233 FVNKLEQWLKAHDVTFHYETPVHDL-IGTQKGYYVELNDESRSFyDGVIVATPHQVFREWFSTDP--MFDYFSKLEASSV 309
Cdd:PRK07233  200 LIDALAEAIEARGGEIRLGTPVTSVvIDGGGVTGVEVDGEEEDF-DAVISTAPPPILARLVPDLPadVLARLRRIDYQGV 278
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 310 ATIVFAFDEANIE----NTSDgtgfvvartSATDITACTWTTKKWPHTTPEGKVLIraYIGK--QGDNIVNEKTDEELVA 383
Cdd:PRK07233  279 VCMVLKLRRPLTDyywlNIND---------PGAPFGGVIEHTNLVPPERYGGEHLV--YLPKylPGDHPLWQMSDEELLD 347
                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2095223079 384 IAKNDLQQMMtfhgePDFTI-------VNKMPYVSPQYHVGHIARIKAIQQHI 429
Cdd:PRK07233  348 RFLSYLRKMF-----PDFDRddvravrISRAPYAQPIYEPGYLDKIPPYDTPI 395
COG3349 COG3349
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ...
1-318 8.55e-17

Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];


Pssm-ID: 442577 [Multi-domain]  Cd Length: 445  Bit Score: 82.21  E-value: 8.55e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079   1 MTNVAIIGAGITGLSSAYF-IKQKYPhvnVTIYEATDRPGGKIKTVHHD--GYTIELGPESYLGRKTILTEVAKAVGmTD 77
Cdd:COG3349     3 PPRVVVVGGGLAGLAAAVElAEAGFR---VTLLEARPRLGGRARSFPDPdtGLPIDNGQHVLLGCYRNTLDLLRRIG-AA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079  78 DDIVtnetgqsyiFANDTLYPIPGGAI-------LGVPTDI-KPFMSTKLISMKGKLRALKDLT--IKPIEMENEDMSVG 147
Cdd:COG3349    79 DNLV---------GPEPLQFPLPGGRRwtlraprLPAPLHLlRALLRAPGLSLADRLALLRLLTacRERRWRELDDISVA 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 148 EFF-RTRLGDEVLENLIEPLLsgiygtdidvLSLMSTFPnfkaleeEHGS--IIKGMqhvkkerqqqaqhnqqgpqgqFK 224
Cdd:COG3349   150 DWLrRHGQSPRLIRRLWEPLL----------LAALNTPP-------EQASarLALTV---------------------LR 191
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 225 QF-------------RHGLND-FVNKLEQWLKAHDVTFHYETPVHDLIGTQKGY-YVELNDESRSFYDGVIVATPHQVFR 289
Cdd:COG3349   192 ETllagpaasdllvpRGPLSElFVDPALAYLEARGGEVRLGTRVRALEFDGGRVtGLVLADGETVPADAVVLAVPPEVAA 271
                         330       340       350
                  ....*....|....*....|....*....|..
gi 2095223079 290 EWFST---DPMFDYFSKLEASSVATIVFAFDE 318
Cdd:COG3349   272 RLLPElarLPELGLLAPLEYSPIVNVHLWLDR 303
COG1233 COG1233
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and ...
1-318 4.18e-13

Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440846 [Multi-domain]  Cd Length: 491  Bit Score: 71.03  E-value: 4.18e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079   1 MTNVAIIGAGITGLSSA-YFIKQKYphvNVTIYEATDRPGGKIKTVHHDGYTIELGPeSYLGRKTILTEVAKAVGMTDD- 78
Cdd:COG1233     3 MYDVVVIGAGIGGLAAAaLLARAGY---RVTVLEKNDTPGGRARTFERPGFRFDVGP-SVLTMPGVLERLFRELGLEDYl 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079  79 DIVTNETGQSYIFANDTLYPIPGG------AILGV-PTD------------------IKPFMSTKLISMKGKLRALKDLT 133
Cdd:COG1233    79 ELVPLDPAYRVPFPDGRALDLPRDlertaaELERLfPGDaeayrrflaelrrlydalLEDLLYRPLLSLRDLLRPLALAR 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 134 IKPIEMenedMSVGEFFRTRLGDEVLENLIEpLLSGIYGTDID----VLSLMStfpnfkaleeeHGSIIKGMQHvkkerq 209
Cdd:COG1233   159 LLRLLL----RSLRDLLRRYFKDPRLRALLA-GQALYLGLSPDrtpaLYALIA-----------YLEYAGGVWY------ 216
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079 210 qqaqhnqqgPQGqfkqfrhGLNDFVNKLEQWLKAHDVTFHYETPVHDLI---GTQKGyyVELNDESRSFYDGVIV-ATPH 285
Cdd:COG1233   217 ---------PKG-------GMGALADALARLAEELGGEIRTGAEVERILvegGRATG--VRLADGEEIRADAVVSnADPA 278
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 2095223079 286 QVFREWFSTDPM-FDYFSKLE----ASSVATIVFAFDE 318
Cdd:COG1233   279 HTYLRLLGEEALpARYRRRLErfrySPSAFKLYLGLDG 316
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
6-56 6.65e-12

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 60.62  E-value: 6.65e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2095223079   6 IIGAGITGLSSAYFIKQKypHVNVTIYEATDRPGGKIKTVHHDGYTIELGP 56
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKR--GFRVLVLEKRDRLGGNAYSYRVPGYVFDYGA 49
Ppro0129 COG2907
Predicted flavin-containing amine oxidase [General function prediction only];
3-40 8.19e-09

Predicted flavin-containing amine oxidase [General function prediction only];


Pssm-ID: 442151 [Multi-domain]  Cd Length: 423  Bit Score: 57.43  E-value: 8.19e-09
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2095223079   3 NVAIIGAGITGLSSAYFIKQKYphvNVTIYEATDRPGG 40
Cdd:COG2907     5 RIAVIGSGISGLTAAWLLSRRH---DVTLFEANDRLGG 39
PRK07208 PRK07208
hypothetical protein; Provisional
1-55 5.34e-08

hypothetical protein; Provisional


Pssm-ID: 235967 [Multi-domain]  Cd Length: 479  Bit Score: 54.90  E-value: 5.34e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2095223079   1 MTNVAIIGAGITGLSSAY-FIKQKYPhvnVTIYEATDRPGGKIKTVHHDGYTIELG 55
Cdd:PRK07208    4 KKSVVIIGAGPAGLTAAYeLLKRGYP---VTVLEADPVVGGISRTVTYKGNRFDIG 56
COG3380 COG3380
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];
1-55 7.56e-07

Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];


Pssm-ID: 442607 [Multi-domain]  Cd Length: 331  Bit Score: 51.03  E-value: 7.56e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2095223079   1 MTNVAIIGAGITGLSSAYFIKQKypHVNVTIYEATDRPGGKIKTVHHDGYTIELG 55
Cdd:COG3380     3 MPDIAIIGAGIAGLAAARALQDA--GHEVTVFEKSRGVGGRMATRRLDGGRFDHG 55
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
4-40 8.93e-06

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 47.78  E-value: 8.93e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2095223079   4 VAIIGAGITGLSSAYFIKQKypHVNVTIYEATDRPGG 40
Cdd:pfam01266   2 VVVIGGGIVGLSTAYELARR--GLSVTLLERGDDPGS 36
PRK11728 PRK11728
L-2-hydroxyglutarate oxidase;
1-39 1.98e-05

L-2-hydroxyglutarate oxidase;


Pssm-ID: 183292 [Multi-domain]  Cd Length: 393  Bit Score: 46.74  E-value: 1.98e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2095223079   1 MTNVAIIGAGITGLSSAYFIKQKYPHVNVTIYEATDRPG 39
Cdd:PRK11728    2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40
PLN02676 PLN02676
polyamine oxidase
4-55 2.69e-05

polyamine oxidase


Pssm-ID: 215362 [Multi-domain]  Cd Length: 487  Bit Score: 46.63  E-value: 2.69e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2095223079   4 VAIIGAGITGLSSAYFIKQKYPHvNVTIYEATDRPGGKIKTVHHDGYTIELG 55
Cdd:PLN02676   29 VIIVGAGMSGISAAKTLSEAGIE-DILILEATDRIGGRMRKANFAGVSVELG 79
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
1-40 2.87e-05

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 46.39  E-value: 2.87e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2095223079   1 MTNVAIIGAGITGLSSAYFIKQKypHVNVTIYEATDRPGG 40
Cdd:COG2072     6 HVDVVVIGAGQAGLAAAYHLRRA--GIDFVVLEKADDVGG 43
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
1-40 3.34e-05

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 46.05  E-value: 3.34e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2095223079   1 MTNVAIIGAGITGLSSAYFIKQKypHVNVTIYEAtDRPGG 40
Cdd:COG0665     2 TADVVVIGGGIAGLSTAYHLARR--GLDVTVLER-GRPGS 38
GltD COG0493
NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport ...
4-40 4.16e-05

NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; NADPH-dependent glutamate synthase beta chain or related oxidoreductase is part of the Pathway/BioSystem: Glutamine biosynthesis


Pssm-ID: 440259 [Multi-domain]  Cd Length: 434  Bit Score: 45.90  E-value: 4.16e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2095223079   4 VAIIGAGITGLSSAYF-IKQKYPhvnVTIYEATDRPGG 40
Cdd:COG0493   124 VAVVGSGPAGLAAAYQlARAGHE---VTVFEALDKPGG 158
PRK12814 PRK12814
putative NADPH-dependent glutamate synthase small subunit; Provisional
4-40 8.54e-05

putative NADPH-dependent glutamate synthase small subunit; Provisional


Pssm-ID: 139246 [Multi-domain]  Cd Length: 652  Bit Score: 45.10  E-value: 8.54e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2095223079   4 VAIIGAGITGLSSAYFIKQKyPHvNVTIYEATDRPGG 40
Cdd:PRK12814  196 VAIIGAGPAGLTAAYYLLRK-GH-DVTIFDANEQAGG 230
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
4-40 9.30e-05

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 44.87  E-value: 9.30e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2095223079   4 VAIIGAGITGLSSAYFIKQKyPHvNVTIYEATDRPGG 40
Cdd:PRK12771  140 VAVIGGGPAGLSAAYHLRRM-GH-AVTIFEAGPKLGG 174
PRK13984 PRK13984
putative oxidoreductase; Provisional
4-40 1.19e-04

putative oxidoreductase; Provisional


Pssm-ID: 172486 [Multi-domain]  Cd Length: 604  Bit Score: 44.37  E-value: 1.19e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2095223079   4 VAIIGAGITGLSSAYFI-KQKYphvNVTIYEATDRPGG 40
Cdd:PRK13984  286 VAIVGSGPAGLSAAYFLaTMGY---EVTVYESLSKPGG 320
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
1-39 1.80e-04

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 43.60  E-value: 1.80e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2095223079   1 MTNVAIIGAGITGLSSAYFIKqKYPHVNVTIYEATDRPG 39
Cdd:COG0579     4 MYDVVIIGAGIVGLALARELS-RYEDLKVLVLEKEDDVA 41
PRK11749 PRK11749
dihydropyrimidine dehydrogenase subunit A; Provisional
4-40 5.09e-04

dihydropyrimidine dehydrogenase subunit A; Provisional


Pssm-ID: 236967 [Multi-domain]  Cd Length: 457  Bit Score: 42.47  E-value: 5.09e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2095223079   4 VAIIGAGITGLSSA-YFIKQKYphvNVTIYEATDRPGG 40
Cdd:PRK11749  143 VAVIGAGPAGLTAAhRLARKGY---DVTIFEARDKAGG 177
PLN02661 PLN02661
Putative thiazole synthesis
2-40 8.60e-04

Putative thiazole synthesis


Pssm-ID: 178267  Cd Length: 357  Bit Score: 41.35  E-value: 8.60e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2095223079   2 TNVAIIGAGITGLSSAYFIkQKYPHVNVTIYEATDRPGG 40
Cdd:PLN02661   93 TDVVIVGAGSAGLSCAYEL-SKNPNVKVAIIEQSVSPGG 130
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
1-54 1.29e-03

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 40.69  E-value: 1.29e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2095223079   1 MTNVAIIGAGITGLSSAYFIKQKypHVNVTIYEATDRPGGKIKTVHHDGYTIEL 54
Cdd:COG0654     3 RTDVLIVGGGPAGLALALALARA--GIRVTVVERAPPPRPDGRGIALSPRSLEL 54
PLN02568 PLN02568
polyamine oxidase
4-55 1.88e-03

polyamine oxidase


Pssm-ID: 215308 [Multi-domain]  Cd Length: 539  Bit Score: 40.58  E-value: 1.88e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2095223079   4 VAIIGAGITGLSSA---YFIKQKYPHVNVTIYEATDRPGGKIKTVHHDGYTIELG 55
Cdd:PLN02568    8 IVIIGAGMAGLTAAnklYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMG 62
PLN02487 PLN02487
zeta-carotene desaturase
4-137 2.31e-03

zeta-carotene desaturase


Pssm-ID: 215268 [Multi-domain]  Cd Length: 569  Bit Score: 40.55  E-value: 2.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079   4 VAIIGAGITGLSSAY-FIKQKYphvNVTIYEATDRPGGKIKT-VHHDGYTIELGPESYLGRKTILTEVAKAVGMTDDDIV 81
Cdd:PLN02487   78 VAIIGAGLAGMSTAVeLLDQGH---EVDIYESRPFIGGKVGSfVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLLV 154
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2095223079  82 TNETgqsYIFAN--------DTLYPIpGGAILGvptdIKPFMSTKLISMKGKLRALKDLTIKPI 137
Cdd:PLN02487  155 KDHT---HTFVNkggdvgelDFRFPV-GAPLHG----IKAFLTTNQLEPYDKARNALALATSPV 210
PLN02268 PLN02268
probable polyamine oxidase
4-55 2.53e-03

probable polyamine oxidase


Pssm-ID: 177909 [Multi-domain]  Cd Length: 435  Bit Score: 40.06  E-value: 2.53e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2095223079   4 VAIIGAGITGLSSAYFIKQKypHVNVTIYEATDRPGGKIKTVHHDGYTIELG 55
Cdd:PLN02268    3 VIVIGGGIAGIAAARALHDA--SFKVTLLESRDRIGGRVHTDYSFGFPVDMG 52
PRK12409 PRK12409
D-amino acid dehydrogenase small subunit; Provisional
1-29 3.39e-03

D-amino acid dehydrogenase small subunit; Provisional


Pssm-ID: 237093 [Multi-domain]  Cd Length: 410  Bit Score: 39.62  E-value: 3.39e-03
                          10        20
                  ....*....|....*....|....*....
gi 2095223079   1 MTNVAIIGAGITGLSSAYFIKQKYPHVNV 29
Cdd:PRK12409    1 MSHIAVIGAGITGVTTAYALAQRGYQVTV 29
PRK12831 PRK12831
putative oxidoreductase; Provisional
4-83 3.67e-03

putative oxidoreductase; Provisional


Pssm-ID: 183780 [Multi-domain]  Cd Length: 464  Bit Score: 39.62  E-value: 3.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2095223079   4 VAIIGAGITGLSSA-YFIKQKYphvNVTIYEATDRPGGKIKtvhhdgYTIelgPESYLGRKTIL-TEVA--KAVGMtddD 79
Cdd:PRK12831  143 VAVIGSGPAGLTCAgDLAKMGY---DVTIFEALHEPGGVLV------YGI---PEFRLPKETVVkKEIEniKKLGV---K 207

                  ....
gi 2095223079  80 IVTN 83
Cdd:PRK12831  208 IETN 211
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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