NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2096846903|gb|UBA15484|]
View 

photosystem II 10 kDa phosphoprotein (chloroplast) [Pseudo-nitzschia cuspidata]

Protein Classification

photosystem II reaction center protein PsbH( domain architecture ID 10000071)

photosystem II reaction center protein PsbH is one of the components of the core complex of photosystem II (PSII), which is required for its stability and/or assembly

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
psbH CHL00066
photosystem II protein H
 3-61 2.68e-35

photosystem II protein H


:

Pssm-ID: 177006  Cd Length: 73  Bit Score: 113.58  E-value: 2.68e-35
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 2096846903  3 LRTRLGEILRPLNAEYGKVAPGWGTTPIMGVVMAAFLVFLLIILQIYNSSLIIENVDVD 61
Cdd:CHL00066  15 RRTTVGNLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISVS 73
 
Name Accession Description Interval E-value
psbH CHL00066
photosystem II protein H
 3-61 2.68e-35

photosystem II protein H


Pssm-ID: 177006  Cd Length: 73  Bit Score: 113.58  E-value: 2.68e-35
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 2096846903  3 LRTRLGEILRPLNAEYGKVAPGWGTTPIMGVVMAAFLVFLLIILQIYNSSLIIENVDVD 61
Cdd:CHL00066  15 RRTTVGNLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISVS 73
PsbH COG5722
Photosystem II reaction center 10 kDa phosphoprotein, PsbH [Energy production and conversion]; ...
 1-64 5.36e-33

Photosystem II reaction center 10 kDa phosphoprotein, PsbH [Energy production and conversion]; Photosystem II reaction center 10 kDa phosphoprotein, PsbH is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444432  Cd Length: 67  Bit Score: 107.46  E-value: 5.36e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2096846903  1 MALRTRLGEILRPLNAEYGKVAPGWGTTPIMGVVMAAFLVFLLIILQIYNSSLIIENVDVDWAN 64
Cdd:COG5722    1 MAQRTWLGDLLKPLNSEYGKVAPGWGTTPVMGVFMVLFFVFLLIILQIYNSSLLLEGVDVDWTG 64
PsbH pfam00737
Photosystem II 10 kDa phosphoprotein; This protein is phosphorylated in a light dependent ...
 4-55 1.59e-26

Photosystem II 10 kDa phosphoprotein; This protein is phosphorylated in a light dependent reaction.


Pssm-ID: 425845  Cd Length: 52  Bit Score: 90.97  E-value: 1.59e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 2096846903  4 RTRLGEILRPLNAEYGKVAPGWGTTPIMGVVMAAFLVFLLIILQIYNSSLII 55
Cdd:pfam00737  1 RTRLGDLLKPLNSEYGKVAPGWGTTPVMGVFMALFAVFLLIILQIYNSSLLL 52
 
Name Accession Description Interval E-value
psbH CHL00066
photosystem II protein H
 3-61 2.68e-35

photosystem II protein H


Pssm-ID: 177006  Cd Length: 73  Bit Score: 113.58  E-value: 2.68e-35
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 2096846903  3 LRTRLGEILRPLNAEYGKVAPGWGTTPIMGVVMAAFLVFLLIILQIYNSSLIIENVDVD 61
Cdd:CHL00066  15 RRTTVGNLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISVS 73
PsbH COG5722
Photosystem II reaction center 10 kDa phosphoprotein, PsbH [Energy production and conversion]; ...
 1-64 5.36e-33

Photosystem II reaction center 10 kDa phosphoprotein, PsbH [Energy production and conversion]; Photosystem II reaction center 10 kDa phosphoprotein, PsbH is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444432  Cd Length: 67  Bit Score: 107.46  E-value: 5.36e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2096846903  1 MALRTRLGEILRPLNAEYGKVAPGWGTTPIMGVVMAAFLVFLLIILQIYNSSLIIENVDVDWAN 64
Cdd:COG5722    1 MAQRTWLGDLLKPLNSEYGKVAPGWGTTPVMGVFMVLFFVFLLIILQIYNSSLLLEGVDVDWTG 64
psbH PRK02624
photosystem II reaction center protein PsbH;
1-64 6.79e-33

photosystem II reaction center protein PsbH;


Pssm-ID: 179451  Cd Length: 64  Bit Score: 107.11  E-value: 6.79e-33
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2096846903  1 MALRTRLGEILRPLNAEYGKVAPGWGTTPIMGVVMAAFLVFLLIILQIYNSSLIIENVDVDWAN 64
Cdd:PRK02624   1 MAQRTRLGDLLKPLNSEYGKVVPGWGTTPVMAVFMVLFLVFLLIILQIYNQSLLLQGFSVDWNG 64
PLN00055 PLN00055
photosystem II reaction center protein H; Provisional
 1-61 6.84e-31

photosystem II reaction center protein H; Provisional


Pssm-ID: 177686  Cd Length: 73  Bit Score: 102.61  E-value: 6.84e-31
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2096846903  1 MALRTRLGEILRPLNAEYGKVAPGWGTTPIMGVVMAAFLVFLLIILQIYNSSLIIENVDVD 61
Cdd:PLN00055  13 GPRRTIVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISVN 73
PsbH pfam00737
Photosystem II 10 kDa phosphoprotein; This protein is phosphorylated in a light dependent ...
 4-55 1.59e-26

Photosystem II 10 kDa phosphoprotein; This protein is phosphorylated in a light dependent reaction.


Pssm-ID: 425845  Cd Length: 52  Bit Score: 90.97  E-value: 1.59e-26
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 2096846903  4 RTRLGEILRPLNAEYGKVAPGWGTTPIMGVVMAAFLVFLLIILQIYNSSLII 55
Cdd:pfam00737  1 RTRLGDLLKPLNSEYGKVAPGWGTTPVMGVFMALFAVFLLIILQIYNSSLLL 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH