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Conserved domains on  [gi|2126415220|gb|UDU23894|]
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DUF930 domain-containing protein (plasmid) [Sinorhizobium meliloti]

Protein Classification

DUF930 domain-containing protein( domain architecture ID 10532792)

DUF930 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF930 pfam06059
Domain of Unknown Function (DUF930); Family of bacterial proteins with undetermined function. ...
 206-303 9.17e-49

Domain of Unknown Function (DUF930); Family of bacterial proteins with undetermined function. All bacteria in this family are from the Rhizobiales order.


:

Pssm-ID: 428747  Cd Length: 99  Bit Score: 157.83  E-value: 9.17e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220 206 GRLPPKKRIVQLCSIEALEQVRREMPGAFPDMLVPFGPSGGFISETGLNADGGAFRSRSTWYAIDFKCEVSPETTSVTSF 285
Cdd:pfam06059   2 GKLPPEERLEQRCDAEAMEQIGRDKKGMKPDRLVAYAFSDPRISGTTLTAPGAAFRSGGHWYHLSFTCEVDPDHLKVTSF 81

                          90
                  ....*....|....*...
gi 2126415220 286 SFAIGKAIPKSEWGARQL 303
Cdd:pfam06059  82 SYKLGDAIPRSEWEKRGL 99
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
33-119 2.84e-05

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK14971:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 614  Bit Score: 45.54  E-value: 2.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220  33 PAKEQSVSVelvPQPKSAEKPEQKPnaaKSEQARPQPEAFESAAAPAEKekPPQPELPPAAPKKTETPSETPEASRPAPA 112
Cdd:PRK14971  381 PVFTQPAAA---PQPSAAAAASPSP---SQSSAAAQPSAPQSATQPAGT--PPTVSVDPPAAVPVNPPSTAPQAVRPAQF 452


                  ....*..
gi 2126415220 113 KTENTAS 119
Cdd:PRK14971  453 KEEKKIP 459
 
Name Accession Description Interval E-value
DUF930 pfam06059
Domain of Unknown Function (DUF930); Family of bacterial proteins with undetermined function. ...
 206-303 9.17e-49

Domain of Unknown Function (DUF930); Family of bacterial proteins with undetermined function. All bacteria in this family are from the Rhizobiales order.


Pssm-ID: 428747  Cd Length: 99  Bit Score: 157.83  E-value: 9.17e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220 206 GRLPPKKRIVQLCSIEALEQVRREMPGAFPDMLVPFGPSGGFISETGLNADGGAFRSRSTWYAIDFKCEVSPETTSVTSF 285
Cdd:pfam06059   2 GKLPPEERLEQRCDAEAMEQIGRDKKGMKPDRLVAYAFSDPRISGTTLTAPGAAFRSGGHWYHLSFTCEVDPDHLKVTSF 81

                          90
                  ....*....|....*...
gi 2126415220 286 SFAIGKAIPKSEWGARQL 303
Cdd:pfam06059  82 SYKLGDAIPRSEWEKRGL 99
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
33-119 2.84e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 45.54  E-value: 2.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220  33 PAKEQSVSVelvPQPKSAEKPEQKPnaaKSEQARPQPEAFESAAAPAEKekPPQPELPPAAPKKTETPSETPEASRPAPA 112
Cdd:PRK14971  381 PVFTQPAAA---PQPSAAAAASPSP---SQSSAAAQPSAPQSATQPAGT--PPTVSVDPPAAVPVNPPSTAPQAVRPAQF 452


                  ....*..
gi 2126415220 113 KTENTAS 119
Cdd:PRK14971  453 KEEKKIP 459
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
49-124 2.88e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 42.29  E-value: 2.88e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2126415220  49 SAEKPEQKPNAAKSEQARPQPEAFESAAAPAEKEKPPQPELPPAApkktetpsetPEASRPAPAKTENTASEKPAE 124
Cdd:COG5373    34 EAELAEAAEAASAPAEPEPEAAAAATAAAPEAAPAPVPEAPAAPP----------AAAEAPAPAAAAPPAEAEPAA 99
 
Name Accession Description Interval E-value
DUF930 pfam06059
Domain of Unknown Function (DUF930); Family of bacterial proteins with undetermined function. ...
 206-303 9.17e-49

Domain of Unknown Function (DUF930); Family of bacterial proteins with undetermined function. All bacteria in this family are from the Rhizobiales order.


Pssm-ID: 428747  Cd Length: 99  Bit Score: 157.83  E-value: 9.17e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220 206 GRLPPKKRIVQLCSIEALEQVRREMPGAFPDMLVPFGPSGGFISETGLNADGGAFRSRSTWYAIDFKCEVSPETTSVTSF 285
Cdd:pfam06059   2 GKLPPEERLEQRCDAEAMEQIGRDKKGMKPDRLVAYAFSDPRISGTTLTAPGAAFRSGGHWYHLSFTCEVDPDHLKVTSF 81

                          90
                  ....*....|....*...
gi 2126415220 286 SFAIGKAIPKSEWGARQL 303
Cdd:pfam06059  82 SYKLGDAIPRSEWEKRGL 99
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
33-119 2.84e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 45.54  E-value: 2.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220  33 PAKEQSVSVelvPQPKSAEKPEQKPnaaKSEQARPQPEAFESAAAPAEKekPPQPELPPAAPKKTETPSETPEASRPAPA 112
Cdd:PRK14971  381 PVFTQPAAA---PQPSAAAAASPSP---SQSSAAAQPSAPQSATQPAGT--PPTVSVDPPAAVPVNPPSTAPQAVRPAQF 452


                  ....*..
gi 2126415220 113 KTENTAS 119
Cdd:PRK14971  453 KEEKKIP 459
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 49-181 6.20e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 44.47  E-value: 6.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220  49 SAEKPEQKPNAAKSEQARPQPEAFESAAAPAEKEKPPQPELPPAAPKKTETPSETPEASRPAPAKTENTASEKPAESRTA 128
Cdd:PRK07994  367 EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAA 446

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2126415220 129 laelrVDARSAANEAADAATAPPAAAVPQEKPVLEEA-RAEPTQPPEAKAEREA 181
Cdd:PRK07994  447 -----SRARPVNSALERLASVRPAPSALEKAPAKKEAyRWKATNPVEVKKEPVA 495
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
49-124 2.88e-04

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 42.29  E-value: 2.88e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2126415220  49 SAEKPEQKPNAAKSEQARPQPEAFESAAAPAEKEKPPQPELPPAApkktetpsetPEASRPAPAKTENTASEKPAE 124
Cdd:COG5373    34 EAELAEAAEAASAPAEPEPEAAAAATAAAPEAAPAPVPEAPAAPP----------AAAEAPAPAAAAPPAEAEPAA 99
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
31-210 3.40e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.17  E-value: 3.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220  31 SAPAKEQSVSVELVPQPKSAEKPEQKPNAAKSEQARPQPEAFESAAAPAEKEKPPQPELPPAAPKKTETPSETPEASRPA 110
Cdd:PRK12323  372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220 111 PAktenTASEKPAESRTALAELRVDARSAANEAADAATAPPAAAVPQEKPVLEEARAEPTQPpeAKAEREASQLVRAKEL 190
Cdd:PRK12323  452 PA----PAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP--APAQPDAAPAGWVAES 525

                         170       180
                  ....*....|....*....|
gi 2126415220 191 YSENALSDPRVKQAIGRLPP 210
Cdd:PRK12323  526 IPDPATADPDDAFETLAPAP 545
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 69-190 6.70e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 41.24  E-value: 6.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220  69 PEAFESAAAPAEKEKPPQPELPPAAPKK------TETPSETPEASRPAPAKTENTASEKPAESRTALAELRVDARSAANE 142
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPvaqaaaAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2126415220 143 AADAATAPPAAAVPQEKPVLEEARAEPTQPPEAKAEREASQLVRAKEL 190
Cdd:PRK14951  446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PTZ00144 PTZ00144
dihydrolipoamide succinyltransferase; Provisional
 48-133 1.01e-03

dihydrolipoamide succinyltransferase; Provisional


Pssm-ID: 240289 [Multi-domain]  Cd Length: 418  Bit Score: 40.44  E-value: 1.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220  48 KSAEKPEQKPNAAKSEQARPQPEAFESAAAPAEKEKPPQPELPPAAPKKTETPSETPeasrpaPAKTENTASEKPAESRT 127
Cdd:PTZ00144  119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAA------KPPPTPVARADPRETRV 192


                  ....*.
gi 2126415220 128 ALAELR 133
Cdd:PTZ00144  193 PMSRMR 198
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 46-128 1.06e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 40.70  E-value: 1.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220  46 QPKSAEKPEQKPNAakSEQARPQPEAfesAAAPAEKEKPPQPELPPAAPKKTETPSETPEASRPAPAKTENTASEKPAES 125
Cdd:PRK14954  381 APSPAGSPDVKKKA--PEPDLPQPDR---HPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPRNVA 455


                  ...
gi 2126415220 126 RTA 128
Cdd:PRK14954  456 SGK 458
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 57-127 1.10e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 40.64  E-value: 1.10e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2126415220   57 PNAAKSEQARPQPEAFESAAAPAEKEKPPQPELPPAAPKKTETPSETPEASRPAPAKTENTASEKPAESRT 127
Cdd:PRK12270    47 AAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 45-119 1.96e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 39.87  E-value: 1.96e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2126415220   45 PQPKSAEKPEQKPNAAKSEQARPQPEAFESAAAPAEKEKPPQPELPPAAPKKTETPSETPEASRPAPAKTENTAS 119
Cdd:PRK12270    44 PTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 30-128 2.12e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 39.69  E-value: 2.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220  30 LSAPAKEQSVSVELVPQPKSAEKPEQKPNAAKSEQARPQPEAFE-SAAAPAEKEKPP------------QPELPP--AAP 94
Cdd:PRK08691  361 LAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQtPVQTASAAAMPSegktagpvsnqeNNDVPPweDAP 440

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2126415220  95 kkteTPSETPEASRPAPAKTENTASE--KPAESRTA 128
Cdd:PRK08691  441 ----DEAQTAAGTAQTSAKSIQTASEaeTPPENQVS 472
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 54-179 3.25e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 38.93  E-value: 3.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220  54 EQKPNAAKSEQARPQPEAfeSAAAPAEKekPPQPELP-PAAPKKTETPSETPEASRPAPAKTENTASEKPAESRtalAEL 132
Cdd:PRK14951  371 EAAAPAEKKTPARPEAAA--PAAAPVAQ--AAAAPAPaAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAA---APA 443

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2126415220 133 RVDARSAANEAADAATAPPAAAVPQEKPVLEEARAEPTQPPEAKAER 179
Cdd:PRK14951  444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTP 490
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 31-183 3.32e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 39.08  E-value: 3.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220  31 SAPAKEQSVSVELVPQPKSAEKPEQKPNAAKSE--QARPQPEAFESAAAPAEKEkppqpelpPAApkktetpsetPEASR 108
Cdd:PRK07994  389 AAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQllAARQQLQRAQGATKAKKSE--------PAA----------ASRAR 450

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2126415220 109 PAPAKTENTASEKPAESRTALAELRVDARSAANEAADAATAPPAAAVPQEKPVLEEaraEPTQPPEAKAEREASQ 183
Cdd:PRK07994  451 PVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEH---EKTPELAAKLAAEAIE 522
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 10-132 4.00e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 38.69  E-value: 4.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220  10 PTSLALHLALAFLLLVRLPELSAPAKEQSVSVELVP-QPKSAEKPEQKPNAAKSEQARPQPEAFE--SAAAPAEKEKPPQ 86
Cdd:PRK07994  393 PPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQlQRAQGATKAKKSEPAAASRARPVNSALErlASVRPAPSALEKA 472

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2126415220  87 PELPPAAPKKTETPSETPEASRPAPAKTENTA-SEKPAESRTALAEL 132
Cdd:PRK07994  473 PAKKEAYRWKATNPVEVKKEPVATPKALKKALeHEKTPELAAKLAAE 519
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 10-132 4.08e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 38.54  E-value: 4.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220  10 PTSLALHLALAFLLLVRLPELSAPAKEQSVSVELVPQPKSAEKPEQKPNAAKSEQARPQPEAFESAAAPAEKEKP----- 84
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAapaav 445

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2126415220  85 PQPELPPAAPKKTETPSETPEASRPAPAKTENTASEKPAESRTALAEL 132
Cdd:PRK14951  446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
10-174 4.72e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 38.70  E-value: 4.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220  10 PTSLALHLALAFLLLVRLPELSAPAKEQSVSVELVP---QPKSAEKPEQKPNAAKSEQARPQPEAfesAAAPAEKEKPPQ 86
Cdd:PRK12323  423 PARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPaaaARPAAAGPRPVAAAAAAAPARAAPAA---APAPADDDPPPW 499

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220  87 PELPPaapkktETPSETPEASRPAPAKTENTASEKPAeSRTALAELRVDARSAANEAADAATAPPAAAVPQEKPVLEEAR 166
Cdd:PRK12323  500 EELPP------EFASPAPAQPDAAPAGWVAESIPDPA-TADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASG 572


                  ....*...
gi 2126415220 167 AEPTQPPE 174
Cdd:PRK12323  573 LPDMFDGD 580
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 48-129 5.00e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 38.72  E-value: 5.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220   48 KSAEKPEQKPNAAKSEQARPQPEAFESAAAPAEKEKPPQPELPPAAPKKTETPSE--TPEASRPAPAKTENTASEKPAES 125
Cdd:PRK12270    37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAaaAAPAAPPAAAAAAAPAAAAVEDE 116


                   ....
gi 2126415220  126 RTAL 129
Cdd:PRK12270   117 VTPL 120
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
 60-109 5.88e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 37.97  E-value: 5.88e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2126415220  60 AKSEQARPQPEAFESAAAPAEKE--KPPQPELPPAAPKKTETPSETPEASRP 109
Cdd:PRK01297   10 GKGEAEQPAPAPPSPAAAPAPPPpaKTAAPATKAAAPAAAAPRAEKPKKDKP 61
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 65-131 6.45e-03

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 38.33  E-value: 6.45e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2126415220   65 ARPQPEAFESAAAPAEKEKPPQPELPPAAPKKTETPSETPEASRPAPAKTENTASEKPAESRTALAE 131
Cdd:PRK12270    40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAA 106
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 10-133 6.91e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.04  E-value: 6.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220  10 PTSLALHLALAFLLLVRLPELSAPAKEQSVSVELVPQPKSAEKPEQKPNAAKSEQARPQPEAFESAAAPAEKEKPPqpel 89
Cdd:PRK07764  394 PAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPA---- 469

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2126415220  90 PPAAPKKTETPSETPEASRPAPAKTENTASEKPAESRTALAELR 133
Cdd:PRK07764  470 PAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLR 513
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 50-137 7.90e-03

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 37.65  E-value: 7.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220  50 AEKPEQKPNAAKSEQArPQPEAFESAAAPAEKEkppqpELPPAAPKKTETPSETPEASRPAPAKTENTASEKPAESRTAL 129
Cdd:PRK13108  371 IEREQPGDLAGQAPAA-HQVDAEAASAAPEEPA-----ALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDDPAEP 444


                  ....*...
gi 2126415220 130 AELRVDAR 137
Cdd:PRK13108  445 DGIRRQDD 452
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 31-183 9.73e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 37.66  E-value: 9.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220  31 SAPAKEQSVSVELVPQPKSAEKPEQKPNAAKSEQARPQPEAfesAAAPAEKEKPPQPELPPAAPKKTETPSETPEASRPA 110
Cdd:PRK07764  634 AAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAG---GAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPP 710

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2126415220 111 PAKTENTASEKPAESRTALAELRVDARSAANEAADAATAPPAAAVPQEKPVLEEARAEPTQPPEAKAEREASQ 183
Cdd:PRK07764  711 AGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEE 783
PTZ00121 PTZ00121
MAEBL; Provisional
 48-189 9.87e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 37.81  E-value: 9.87e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2126415220   48 KSAEKPEQKPNAAKSEQ--ARPQPEAFESAAAPAEKEKPPQPELPPAAPKKTETPSETPEASRPA-PAKTENTASEKPAE 124
Cdd:PTZ00121  1336 KKAEEAKKAAEAAKAEAeaAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAeEDKKKADELKKAAA 1415

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2126415220  125 SRTALAELRVDARSAANEAADAATAPPAAAVPQEKPVLEEARAEPTQPPEAKAEREASQLVRAKE 189
Cdd:PTZ00121  1416 AKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE 1480
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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