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Conserved domains on  [gi|2128395840|gb|UED34669|]
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DUF1127 domain-containing protein (plasmid) [Rhizobium ruizarguesonis]

Protein Classification

DUF1127 domain-containing protein( domain architecture ID 10009314)

DUF1127 domain-containing protein similar to Escherichia coli YjiS

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjiS COG5457
Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];
1-48 1.63e-10

Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];


:

Pssm-ID: 444208  Cd Length: 61  Bit Score: 49.99  E-value: 1.63e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 2128395840  1 MNVARSFNNWRKYRQTVAELGRMSARELDDLGIGRSEIRNVARAAIAR 48
Cdd:COG5457   13 ARLARRLARWRERRRTRRELARLSDRELADIGLTRSDIRREARKPFWR 60
 
Name Accession Description Interval E-value
YjiS COG5457
Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];
1-48 1.63e-10

Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];


Pssm-ID: 444208  Cd Length: 61  Bit Score: 49.99  E-value: 1.63e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 2128395840  1 MNVARSFNNWRKYRQTVAELGRMSARELDDLGIGRSEIRNVARAAIAR 48
Cdd:COG5457   13 ARLARRLARWRERRRTRRELARLSDRELADIGLTRSDIRREARKPFWR 60
DUF1127 pfam06568
Domain of unknown function (DUF1127); This family is found in several hypothetical bacterial ...
 4-39 4.77e-08

Domain of unknown function (DUF1127); This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.


Pssm-ID: 429007  Cd Length: 36  Bit Score: 42.79  E-value: 4.77e-08
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 2128395840  4 ARSFNNWRKYRQTVAELGRMSARELDDLGIGRSEIR 39
Cdd:pfam06568  1 RAALRRWRRRRRTRRELARLSDRELADIGLSRSDIR 36
 
Name Accession Description Interval E-value
YjiS COG5457
Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];
1-48 1.63e-10

Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown];


Pssm-ID: 444208  Cd Length: 61  Bit Score: 49.99  E-value: 1.63e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 2128395840  1 MNVARSFNNWRKYRQTVAELGRMSARELDDLGIGRSEIRNVARAAIAR 48
Cdd:COG5457   13 ARLARRLARWRERRRTRRELARLSDRELADIGLTRSDIRREARKPFWR 60
DUF1127 pfam06568
Domain of unknown function (DUF1127); This family is found in several hypothetical bacterial ...
 4-39 4.77e-08

Domain of unknown function (DUF1127); This family is found in several hypothetical bacterial proteins. In some cases it represents it represents the C-terminal region whereas in others it represents the whole sequence.


Pssm-ID: 429007  Cd Length: 36  Bit Score: 42.79  E-value: 4.77e-08
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 2128395840  4 ARSFNNWRKYRQTVAELGRMSARELDDLGIGRSEIR 39
Cdd:pfam06568  1 RAALRRWRRRRRTRRELARLSDRELADIGLSRSDIR 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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