|
Name |
Accession |
Description |
Interval |
E-value |
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
190-271 |
3.10e-23 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 90.30 E-value: 3.10e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 190 RIALADLARLVGLNPVYLVRSFRSSVGLPPHTYQRQLRLSRARQMLRSG-TPPAEVAGMVGFADQSHLSRLFKQTTGVTP 268
Cdd:smart00342 1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTdLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80
|
...
gi 2128395856 269 ADY 271
Cdd:smart00342 81 SEY 83
|
|
| AraC |
COG2207 |
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
26-275 |
4.26e-22 |
|
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 92.54 E-value: 4.26e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 26 RASGTQHHFPKHFHDAYAIHLHERGTMAFQYGQPQVALKPGNINVLAPGVVHMCLPAGEQALHYRCLFVSPAFLQYAVLD 105
Cdd:COG2207 4 LILLLLLLLLLALLLLLLLLLLLLILLLLALVLLLLLLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLLL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 106 PGATRLPLFERLLCPGDVELFQSLGSAHRCLETEDDALEAETLLTSGLAALASYSGQRQARVKAGSEPRHVTIIREFLDA 185
Cdd:COG2207 84 ALLALLLLVGLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 186 NYDRRIALADLARLVGLNPVYLVRSFRSSVGLPPHTYQRQLRLSRARQMLRSGT-PPAEVAGMVGFADQSHLSRLFKQTT 264
Cdd:COG2207 164 LLLLLLTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDlSISEIAYELGFSSQSHFSRAFKKRF 243
|
250
....*....|.
gi 2128395856 265 GVTPADYAKGL 275
Cdd:COG2207 244 GVTPSEYRKRL 254
|
|
| GlxA |
COG4977 |
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
160-271 |
3.05e-21 |
|
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];
Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 90.99 E-value: 3.05e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 160 SGQRQ---ARVKAGSEPRHVTIIREFLDANYDRRIALADLARLVGLNPVYLVRSFRSSVGLPPHTYQRQLRLSRARQMLR 236
Cdd:COG4977 193 GGQAQfspLLVPLGHRDPRLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLE 272
|
90 100 110
....*....|....*....|....*....|....*.
gi 2128395856 237 SGT-PPAEVAGMVGFADQSHLSRLFKQTTGVTPADY 271
Cdd:COG4977 273 TTDlSIEEIAAACGFGSASHFRRAFRRRFGVSPSAY 308
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
196-273 |
1.20e-20 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 83.41 E-value: 1.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 196 LARLVGLNPVYLVRSFRSSVGLPPHTYQRQLRLSRARQML--RSGTPPAEVAGMVGFADQSHLSRLFKQTTGVTPADYAK 273
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLleDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
|
| AraC_binding |
pfam02311 |
AraC-like ligand binding domain; This family represents the arabinose-binding and dimerization ... |
19-153 |
1.56e-16 |
|
AraC-like ligand binding domain; This family represents the arabinose-binding and dimerization domain of the bacterial gene regulatory protein AraC. The domain is found in conjunction with the helix-turn-helix (HTH) DNA-binding motif pfam00165. This domain is distantly related to the Cupin domain pfam00190.
Pssm-ID: 396749 [Multi-domain] Cd Length: 134 Bit Score: 74.01 E-value: 1.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 19 LAGVELLRASGTQHHFPKHFHDAYAIHLHERGTMAFQYGQPQVALKPGNINVLAPGVVHMCLPAGEQALHYRCLFVSPAF 98
Cdd:pfam02311 1 NPGLEGIEARYPGHSFPPHVHDFYVIGYIERGVGRFRLNGRTYHLGPGDLFLLPPGEPHDYEPESEDGWRYRWLYFEPEL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2128395856 99 LQYAVLDPGATRlplFERLLCPGDVELFQSLGSAHRCLETED--DALEAETLLTSGL 153
Cdd:pfam02311 81 LERILADISILA---GGPLPLLRDPELAALLRALFRLLEEAGrsDDLLAEALLYQLL 134
|
|
| PRK10572 |
PRK10572 |
arabinose operon transcriptional regulator AraC; |
182-274 |
2.52e-10 |
|
arabinose operon transcriptional regulator AraC;
Pssm-ID: 236717 [Multi-domain] Cd Length: 290 Bit Score: 59.60 E-value: 2.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 182 FLDANYDRRIALADLARLVGLNPVYLVRSFRSSVGLPPHTYQRQLRLSRARQMLR-SGTPPAEVAGMVGFADQSHLSRLF 260
Cdd:PRK10572 191 YISDHLASEFDIESVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQtTRMPIATIGRNVGYDDQLYFSRVF 270
|
90
....*....|....
gi 2128395856 261 KQTTGVTPADYAKG 274
Cdd:PRK10572 271 KKCTGASPSEFRAR 284
|
|
| cupin_YbfI-like_N |
cd07001 |
AraC/XylS family transcriptional regulators similar to Bacillus subtilis YbfI, N-terminal ... |
31-94 |
3.02e-08 |
|
AraC/XylS family transcriptional regulators similar to Bacillus subtilis YbfI, N-terminal cupin domain; This family contains bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators, including YbfI, an uncharacterized Bacillus subtilis. In Pseudomonas putida, this protein is thought to regulate the expression of phenylserine aldolase. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.
Pssm-ID: 380405 [Multi-domain] Cd Length: 76 Bit Score: 49.70 E-value: 3.02e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2128395856 31 QHHFPKHFHDAYAIHLHERGTMAFQYGQPQVALKPGNINVLAPGVVHMCLPAGEQALHYRCLFV 94
Cdd:cd07001 12 QKSFPNHFHDFYVIGFIESGQRTLFCEGKEYTVEPGDLLLINPRDVHSCIQISGRRLDYERINI 75
|
|
| PRK13503 |
PRK13503 |
HTH-type transcriptional activator RhaS; |
31-270 |
1.46e-05 |
|
HTH-type transcriptional activator RhaS;
Pssm-ID: 184094 [Multi-domain] Cd Length: 278 Bit Score: 45.44 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 31 QHHFPKHFHDAYAIHLHERGTMAFQY-GQPQvALKPGNI--------------------NVL--APGV------VHMCLP 81
Cdd:PRK13503 25 QAAFPEHHHDFHEIVIVEHGTGIHVFnGQPY-TLSGGTVcfvrdhdrhlyehtdnlcltNVLyrSPDAfrflagLNQLLP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 82 A---GEQALHYRclfVSPAFLQYAVldpgatrlplferllcpgdvELFQSLGSAHRCLETEDDAlEAETLLTSGLAALAS 158
Cdd:PRK13503 104 QeqdGQYPSHWR---VNQSVLQQVR--------------------QLVAQMEQQEESNDLEAIA-SREILFMQLLVLLRK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 159 YSGQRQArvkAGSEPRHVTIIReFLDANYDRRIALADLARLVGLNPVYLVRSFRSSVGLPPHTYQRQLRLSRARQMLR-S 237
Cdd:PRK13503 160 SSLQENG---ENSDARLNQLLA-WLEDHFAEEVNWEALADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLLKARHLLRhS 235
|
250 260 270
....*....|....*....|....*....|...
gi 2128395856 238 GTPPAEVAGMVGFADQSHLSRLFKQTTGVTPAD 270
Cdd:PRK13503 236 DASVTDIAYRCGFGDSNHFSTLFRREFSWSPRD 268
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
190-271 |
3.10e-23 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 90.30 E-value: 3.10e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 190 RIALADLARLVGLNPVYLVRSFRSSVGLPPHTYQRQLRLSRARQMLRSG-TPPAEVAGMVGFADQSHLSRLFKQTTGVTP 268
Cdd:smart00342 1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTdLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80
|
...
gi 2128395856 269 ADY 271
Cdd:smart00342 81 SEY 83
|
|
| AraC |
COG2207 |
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
26-275 |
4.26e-22 |
|
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 92.54 E-value: 4.26e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 26 RASGTQHHFPKHFHDAYAIHLHERGTMAFQYGQPQVALKPGNINVLAPGVVHMCLPAGEQALHYRCLFVSPAFLQYAVLD 105
Cdd:COG2207 4 LILLLLLLLLLALLLLLLLLLLLLILLLLALVLLLLLLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLLL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 106 PGATRLPLFERLLCPGDVELFQSLGSAHRCLETEDDALEAETLLTSGLAALASYSGQRQARVKAGSEPRHVTIIREFLDA 185
Cdd:COG2207 84 ALLALLLLVGLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 186 NYDRRIALADLARLVGLNPVYLVRSFRSSVGLPPHTYQRQLRLSRARQMLRSGT-PPAEVAGMVGFADQSHLSRLFKQTT 264
Cdd:COG2207 164 LLLLLLTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDlSISEIAYELGFSSQSHFSRAFKKRF 243
|
250
....*....|.
gi 2128395856 265 GVTPADYAKGL 275
Cdd:COG2207 244 GVTPSEYRKRL 254
|
|
| GlxA |
COG4977 |
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
160-271 |
3.05e-21 |
|
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];
Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 90.99 E-value: 3.05e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 160 SGQRQ---ARVKAGSEPRHVTIIREFLDANYDRRIALADLARLVGLNPVYLVRSFRSSVGLPPHTYQRQLRLSRARQMLR 236
Cdd:COG4977 193 GGQAQfspLLVPLGHRDPRLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLE 272
|
90 100 110
....*....|....*....|....*....|....*.
gi 2128395856 237 SGT-PPAEVAGMVGFADQSHLSRLFKQTTGVTPADY 271
Cdd:COG4977 273 TTDlSIEEIAAACGFGSASHFRRAFRRRFGVSPSAY 308
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
196-273 |
1.20e-20 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 83.41 E-value: 1.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 196 LARLVGLNPVYLVRSFRSSVGLPPHTYQRQLRLSRARQML--RSGTPPAEVAGMVGFADQSHLSRLFKQTTGVTPADYAK 273
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLleDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
|
| AdaA |
COG2169 |
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ... |
169-274 |
7.92e-18 |
|
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];
Pssm-ID: 441772 [Multi-domain] Cd Length: 358 Bit Score: 82.02 E-value: 7.92e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 169 AGSEPRHVTIIR--EFLDANYDRRIALADLARLVGLNPVYLVRSFRSSVGLPPHTYQRQLRLSRARQMLRSGTPPAEVAG 246
Cdd:COG2169 77 PGSPPRADLVARacRLIEAGAEDRPSLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRARQLLQTGLSVTDAAY 156
|
90 100
....*....|....*....|....*...
gi 2128395856 247 MVGFADQSHLSRLFKQTTGVTPADYAKG 274
Cdd:COG2169 157 AAGFGSLSRFYEAFKKLLGMTPSAYRRG 184
|
|
| AraC_binding |
pfam02311 |
AraC-like ligand binding domain; This family represents the arabinose-binding and dimerization ... |
19-153 |
1.56e-16 |
|
AraC-like ligand binding domain; This family represents the arabinose-binding and dimerization domain of the bacterial gene regulatory protein AraC. The domain is found in conjunction with the helix-turn-helix (HTH) DNA-binding motif pfam00165. This domain is distantly related to the Cupin domain pfam00190.
Pssm-ID: 396749 [Multi-domain] Cd Length: 134 Bit Score: 74.01 E-value: 1.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 19 LAGVELLRASGTQHHFPKHFHDAYAIHLHERGTMAFQYGQPQVALKPGNINVLAPGVVHMCLPAGEQALHYRCLFVSPAF 98
Cdd:pfam02311 1 NPGLEGIEARYPGHSFPPHVHDFYVIGYIERGVGRFRLNGRTYHLGPGDLFLLPPGEPHDYEPESEDGWRYRWLYFEPEL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2128395856 99 LQYAVLDPGATRlplFERLLCPGDVELFQSLGSAHRCLETED--DALEAETLLTSGL 153
Cdd:pfam02311 81 LERILADISILA---GGPLPLLRDPELAALLRALFRLLEEAGrsDDLLAEALLYQLL 134
|
|
| PRK10572 |
PRK10572 |
arabinose operon transcriptional regulator AraC; |
182-274 |
2.52e-10 |
|
arabinose operon transcriptional regulator AraC;
Pssm-ID: 236717 [Multi-domain] Cd Length: 290 Bit Score: 59.60 E-value: 2.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 182 FLDANYDRRIALADLARLVGLNPVYLVRSFRSSVGLPPHTYQRQLRLSRARQMLR-SGTPPAEVAGMVGFADQSHLSRLF 260
Cdd:PRK10572 191 YISDHLASEFDIESVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQtTRMPIATIGRNVGYDDQLYFSRVF 270
|
90
....*....|....
gi 2128395856 261 KQTTGVTPADYAKG 274
Cdd:PRK10572 271 KKCTGASPSEFRAR 284
|
|
| cupin_YbfI-like_N |
cd07001 |
AraC/XylS family transcriptional regulators similar to Bacillus subtilis YbfI, N-terminal ... |
31-94 |
3.02e-08 |
|
AraC/XylS family transcriptional regulators similar to Bacillus subtilis YbfI, N-terminal cupin domain; This family contains bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators, including YbfI, an uncharacterized Bacillus subtilis. In Pseudomonas putida, this protein is thought to regulate the expression of phenylserine aldolase. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.
Pssm-ID: 380405 [Multi-domain] Cd Length: 76 Bit Score: 49.70 E-value: 3.02e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2128395856 31 QHHFPKHFHDAYAIHLHERGTMAFQYGQPQVALKPGNINVLAPGVVHMCLPAGEQALHYRCLFV 94
Cdd:cd07001 12 QKSFPNHFHDFYVIGFIESGQRTLFCEGKEYTVEPGDLLLINPRDVHSCIQISGRRLDYERINI 75
|
|
| ftrA |
PRK09393 |
transcriptional activator FtrA; Provisional |
181-273 |
3.74e-08 |
|
transcriptional activator FtrA; Provisional
Pssm-ID: 181818 [Multi-domain] Cd Length: 322 Bit Score: 53.43 E-value: 3.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 181 EFLDANYDRRIALADLARLVGLNPVYLVRSFRSSVGLPPHTYQRQLRLSRARQML-RSGTPPAEVAGMVGFADQSHLSRL 259
Cdd:PRK09393 225 DWMRAHLAEPHTVASLAARAAMSPRTFLRRFEAATGMTPAEWLLRERLARARDLLeSSALSIDQIAERAGFGSEESLRHH 304
|
90
....*....|....
gi 2128395856 260 FKQTTGVTPADYAK 273
Cdd:PRK09393 305 FRRRAATSPAAYRK 318
|
|
| PRK10219 |
PRK10219 |
superoxide response transcriptional regulator SoxS; |
175-271 |
9.01e-08 |
|
superoxide response transcriptional regulator SoxS;
Pssm-ID: 182314 [Multi-domain] Cd Length: 107 Bit Score: 49.54 E-value: 9.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 175 HVTIIR---EFLDANYDRRIALADLARLVGLNPVYLVRSFRSSVGLPPHTYQRQLRLSRARQMLRSGTPPA-EVAGMVGF 250
Cdd:PRK10219 3 HQKIIQtliAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIfDIAMDLGY 82
|
90 100
....*....|....*....|.
gi 2128395856 251 ADQSHLSRLFKQTTGVTPADY 271
Cdd:PRK10219 83 VSQQTFSRVFRRQFDRTPSDY 103
|
|
| PRK13501 |
PRK13501 |
HTH-type transcriptional activator RhaR; |
183-271 |
1.56e-07 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184092 [Multi-domain] Cd Length: 290 Bit Score: 51.44 E-value: 1.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 183 LDANYDrriaLADLARLVGLNPVYLVRSFRSSVGLPPHTYQRQLRLSRARQMLRSGTPP-AEVAGMVGFADQSHLSRLFK 261
Cdd:PRK13501 189 LGAYFD----MADFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLLRGSEHRiSDIAARCGFEDSNYFSAVFT 264
|
90
....*....|
gi 2128395856 262 QTTGVTPADY 271
Cdd:PRK13501 265 REAGMTPRDY 274
|
|
| PRK10371 |
PRK10371 |
transcriptional regulator MelR; |
174-273 |
1.71e-06 |
|
transcriptional regulator MelR;
Pssm-ID: 182416 [Multi-domain] Cd Length: 302 Bit Score: 48.28 E-value: 1.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 174 RHVTIIREFLDANYDRRIALADLARLVGLNPVYLVRSFRSSVGLPPHTYQRQLRLSRARQMLrSGTPPA--EVAGMVGFA 251
Cdd:PRK10371 191 FYVSQMLGFIAENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALL-SDTDKSilDIALTAGFR 269
|
90 100
....*....|....*....|..
gi 2128395856 252 DQSHLSRLFKQTTGVTPADYAK 273
Cdd:PRK10371 270 SSSRFYSTFGKYVGMSPQQYRK 291
|
|
| HTH_AraC |
pfam00165 |
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ... |
242-271 |
6.03e-06 |
|
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.
Pssm-ID: 425497 [Multi-domain] Cd Length: 42 Bit Score: 42.53 E-value: 6.03e-06
10 20 30
....*....|....*....|....*....|
gi 2128395856 242 AEVAGMVGFaDQSHLSRLFKQTTGVTPADY 271
Cdd:pfam00165 12 ADIADELGF-SRSYFSRLFKKYTGVTPSQY 40
|
|
| PRK13503 |
PRK13503 |
HTH-type transcriptional activator RhaS; |
31-270 |
1.46e-05 |
|
HTH-type transcriptional activator RhaS;
Pssm-ID: 184094 [Multi-domain] Cd Length: 278 Bit Score: 45.44 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 31 QHHFPKHFHDAYAIHLHERGTMAFQY-GQPQvALKPGNI--------------------NVL--APGV------VHMCLP 81
Cdd:PRK13503 25 QAAFPEHHHDFHEIVIVEHGTGIHVFnGQPY-TLSGGTVcfvrdhdrhlyehtdnlcltNVLyrSPDAfrflagLNQLLP 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 82 A---GEQALHYRclfVSPAFLQYAVldpgatrlplferllcpgdvELFQSLGSAHRCLETEDDAlEAETLLTSGLAALAS 158
Cdd:PRK13503 104 QeqdGQYPSHWR---VNQSVLQQVR--------------------QLVAQMEQQEESNDLEAIA-SREILFMQLLVLLRK 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 159 YSGQRQArvkAGSEPRHVTIIReFLDANYDRRIALADLARLVGLNPVYLVRSFRSSVGLPPHTYQRQLRLSRARQMLR-S 237
Cdd:PRK13503 160 SSLQENG---ENSDARLNQLLA-WLEDHFAEEVNWEALADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLLKARHLLRhS 235
|
250 260 270
....*....|....*....|....*....|...
gi 2128395856 238 GTPPAEVAGMVGFADQSHLSRLFKQTTGVTPAD 270
Cdd:PRK13503 236 DASVTDIAYRCGFGDSNHFSTLFRREFSWSPRD 268
|
|
| PRK09685 |
PRK09685 |
DNA-binding transcriptional activator FeaR; Provisional |
201-275 |
1.78e-05 |
|
DNA-binding transcriptional activator FeaR; Provisional
Pssm-ID: 236612 [Multi-domain] Cd Length: 302 Bit Score: 45.41 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2128395856 201 GLNPVYLVRSFRSSV----------GLPPHTYQRQLRLSRARQMLRS---GTPPAEVAGMVGFADQSHLSRLFKQTTGVT 267
Cdd:PRK09685 214 ILRPEWIAGELGISVrslyrlfaeqGLVVAQYIRNRRLDRCADDLRPaadDEKITSIAYKWGFSDSSHFSTAFKQRFGVS 293
|
....*...
gi 2128395856 268 PADYAKGL 275
Cdd:PRK09685 294 PGEYRRKF 301
|
|
| PRK13502 |
PRK13502 |
HTH-type transcriptional activator RhaR; |
207-271 |
1.06e-04 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184093 [Multi-domain] Cd Length: 282 Bit Score: 42.73 E-value: 1.06e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2128395856 207 LVRSFRSSVGLPPHTYQRQLRLSRARQMLR-SGTPPAEVAGMVGFADQSHLSRLFKQTTGVTPADY 271
Cdd:PRK13502 209 LRQQFRAQTGMTINQYLRQVRICHAQYLLQhSPLMISEISMQCGFEDSNYFSVVFTRETGMTPSQW 274
|
|
| HTH_AraC |
pfam00165 |
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ... |
183-224 |
1.32e-03 |
|
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.
Pssm-ID: 425497 [Multi-domain] Cd Length: 42 Bit Score: 35.59 E-value: 1.32e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2128395856 183 LDANYDRRIALADLARLVGLNPVYLVRSFRSSVGLPPHTYQR 224
Cdd:pfam00165 1 LRENLSTNLTIADIADELGFSRSYFSRLFKKYTGVTPSQYRH 42
|
|
| PRK13500 |
PRK13500 |
HTH-type transcriptional activator RhaR; |
207-271 |
1.64e-03 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184091 [Multi-domain] Cd Length: 312 Bit Score: 39.31 E-value: 1.64e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2128395856 207 LVRSFRSSVGLPPHTYQRQLRLSRARQMLR-SGTPPAEVAGMVGFADQSHLSRLFKQTTGVTPADY 271
Cdd:PRK13500 239 LRQQFRQQTGMTINQYLRQVRVCHAQYLLQhSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQW 304
|
|
| QdoI |
COG1917 |
Cupin domain protein related to quercetin dioxygenase [General function prediction only]; |
32-77 |
5.27e-03 |
|
Cupin domain protein related to quercetin dioxygenase [General function prediction only];
Pssm-ID: 441521 [Multi-domain] Cd Length: 99 Bit Score: 35.59 E-value: 5.27e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 2128395856 32 HHFPKHFHDAYAIHLHERGTMAFQYGQPQVALKPGNINVLAPGVVH 77
Cdd:COG1917 34 ARTPWHSHPGEELIYVLEGEGEVEVGGEEYELKPGDVVFIPPGVPH 79
|
|
| |
