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Conserved domains on  [gi|2164967078|gb|UGV21708|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Comaster schlegelii]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009538)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 1-163 4.66e-33

NADH dehydrogenase subunit 6; Validated


:

Pssm-ID: 177120  Cd Length: 162  Bit Score: 114.62  E-value: 4.66e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2164967078   1 MNIYFSIILILLGTSLVFYSMSPYFSALGLTIVSISSCFILIQTGMSFLALILLLVYMGGMLIVFIYSSALSADRFPIIS 80
Cdd:MTH00045    1 MVFYLFLILMLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPSVS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2164967078  81 NINEIIILCLFITSWTIILFNNNNWNNINNNNISNLTSIEGASYlFSPSFFLFFIFAAYILLITLIAVLNITQETESSTL 160
Cdd:MTH00045   81 NLGEVLVLSLLLSLWVFISFDNFLELSNNNWSLVSLSDLVGSSE-LYNSGGLYLLLGGFILLVALVVALVISFGHEYSSL 159


                  ...
gi 2164967078 161 RAL 163
Cdd:MTH00045  160 RAL 162
 
Name Accession Description Interval E-value
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 1-163 4.66e-33

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 114.62  E-value: 4.66e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2164967078   1 MNIYFSIILILLGTSLVFYSMSPYFSALGLTIVSISSCFILIQTGMSFLALILLLVYMGGMLIVFIYSSALSADRFPIIS 80
Cdd:MTH00045    1 MVFYLFLILMLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPSVS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2164967078  81 NINEIIILCLFITSWTIILFNNNNWNNINNNNISNLTSIEGASYlFSPSFFLFFIFAAYILLITLIAVLNITQETESSTL 160
Cdd:MTH00045   81 NLGEVLVLSLLLSLWVFISFDNFLELSNNNWSLVSLSDLVGSSE-LYNSGGLYLLLGGFILLVALVVALVISFGHEYSSL 159


                  ...
gi 2164967078 161 RAL 163
Cdd:MTH00045  160 RAL 162
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
16-74 2.93e-04

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 39.02  E-value: 2.93e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2164967078  16 LVFYSMSPYFSALGLTIVSISSCFILIQTGMSFLALILLLVYMGGMLIVFIYSSALSAD 74
Cdd:pfam00499   2 GVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLA 60
 
Name Accession Description Interval E-value
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 1-163 4.66e-33

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 114.62  E-value: 4.66e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2164967078   1 MNIYFSIILILLGTSLVFYSMSPYFSALGLTIVSISSCFILIQTGMSFLALILLLVYMGGMLIVFIYSSALSADRFPIIS 80
Cdd:MTH00045    1 MVFYLFLILMLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPSVS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2164967078  81 NINEIIILCLFITSWTIILFNNNNWNNINNNNISNLTSIEGASYlFSPSFFLFFIFAAYILLITLIAVLNITQETESSTL 160
Cdd:MTH00045   81 NLGEVLVLSLLLSLWVFISFDNFLELSNNNWSLVSLSDLVGSSE-LYNSGGLYLLLGGFILLVALVVALVISFGHEYSSL 159


                  ...
gi 2164967078 161 RAL 163
Cdd:MTH00045  160 RAL 162
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 22-77 2.37e-19

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 79.80  E-value: 2.37e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2164967078  22 SPYFSALGLTIVSISSCFILIQTGMSFLALILLLVYMGGMLIVFIYSSALSADRFP 77
Cdd:MTH00138   24 SPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYP 79
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 22-77 1.88e-16

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 72.19  E-value: 1.88e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2164967078  22 SPYFSALGLTIVSISSCFILIQTGMSFLALILLLVYMGGMLIVFIYSSALSADRFP 77
Cdd:MTH00065   24 SPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYP 79
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 3-77 1.00e-13

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 65.15  E-value: 1.00e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2164967078   3 IYFSIILILLGTSLVFYSMSPYFSALGLTIVSISSCFILIQTGMSFLALILLLVYMGGMLIVFIYSSALSADRFP 77
Cdd:MTH00115    5 VFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYP 79
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-162 1.70e-11

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 58.85  E-value: 1.70e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2164967078   1 MNIYFSIILILLGTSLVFYSMSPYFSALGLTIVSISSCFILIQTGMSFLALILLLVYMGGMLIVFIYSSALSADRFPIIS 80
Cdd:MTH00214    3 YFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPESW 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2164967078  81 NINEIIILCLFI---TSWTIILFNNNNWNNINNNNISNLTSIEGASYLFSPSFFLFFIFAAYILLITLIAVLNITQETES 157
Cdd:MTH00214   83 GGWSVLLFFLFYllgLGFVGFYFYGGWEMLSWMGVDEANNLDLSGVSDLYSRGFFLLLLGGVVLFLVLFVVLELVRGLSR 162


                  ....*
gi 2164967078 158 STLRA 162
Cdd:MTH00214  163 GALRV 167
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
16-74 2.93e-04

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 39.02  E-value: 2.93e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2164967078  16 LVFYSMSPYFSALGLTIVSISSCFILIQTGMSFLALILLLVYMGGMLIVFIYSSALSAD 74
Cdd:pfam00499   2 GVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLA 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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