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Conserved domains on  [gi|2186877630|gb|UKB67692|]
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Rop family plasmid primer RNA-binding protein (plasmid) [Enterobacter cloacae complex sp. ECL414]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rop super family cl03364
Rop protein;
1-57 4.40e-14

Rop protein;


The actual alignment was detected with superfamily member pfam01815:

Pssm-ID: 426451  Cd Length: 57  Bit Score: 59.50  E-value: 4.40e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 2186877630  1 MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQAEALYAMLNAQIG 57
Cdd:pfam01815  1 MTKQQKTALNMAKFIRSQSLLLLEKLNELDADEQADMCERLHEDAEELQRSIQARLG 57
 
Name Accession Description Interval E-value
Rop pfam01815
Rop protein;
1-57 4.40e-14

Rop protein;


Pssm-ID: 426451  Cd Length: 57  Bit Score: 59.50  E-value: 4.40e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 2186877630  1 MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQAEALYAMLNAQIG 57
Cdd:pfam01815  1 MTKQQKTALNMAKFIRSQSLLLLEKLNELDADEQADMCERLHEDAEELQRSIQARLG 57
PLN02467 PLN02467
betaine aldehyde dehydrogenase
 12-56 2.46e-03

betaine aldehyde dehydrogenase


Pssm-ID: 215260 [Multi-domain]  Cd Length: 503  Bit Score: 33.94  E-value: 2.46e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2186877630  12 AKFIRAQTLLLLER------LEQMD----LDEA-------AGCCEHLHDQAEALYAMLNAQI 56
Cdd:PLN02467   75 AKYLRAIAAKITERkselakLETLDcgkpLDEAawdmddvAGCFEYYADLAEALDAKQKAPV 136
 
Name Accession Description Interval E-value
Rop pfam01815
Rop protein;
1-57 4.40e-14

Rop protein;


Pssm-ID: 426451  Cd Length: 57  Bit Score: 59.50  E-value: 4.40e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 2186877630  1 MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQAEALYAMLNAQIG 57
Cdd:pfam01815  1 MTKQQKTALNMAKFIRSQSLLLLEKLNELDADEQADMCERLHEDAEELQRSIQARLG 57
PLN02467 PLN02467
betaine aldehyde dehydrogenase
 12-56 2.46e-03

betaine aldehyde dehydrogenase


Pssm-ID: 215260 [Multi-domain]  Cd Length: 503  Bit Score: 33.94  E-value: 2.46e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2186877630  12 AKFIRAQTLLLLER------LEQMD----LDEA-------AGCCEHLHDQAEALYAMLNAQI 56
Cdd:PLN02467   75 AKYLRAIAAKITERkselakLETLDcgkpLDEAawdmddvAGCFEYYADLAEALDAKQKAPV 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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