|
Name |
Accession |
Description |
Interval |
E-value |
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
3-270 |
9.18e-109 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 316.28 E-value: 9.18e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 3 VWNQLRKDRMAILSIWLLVLVTLAGLFAPFLAPHDPTDTNILQKYAGVSLTYPLGTDQLGRCVLSRLLYGIRTTMLAAVL 82
Cdd:COG1173 8 AWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARISLLVGLL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 83 TMCITMFIGTILGLVAGFFRGKVDGALMRICDVMLSFPAEVMILAVVGIMGPGLFNIILANVLAKWAWYTRMIRSSVLQY 162
Cdd:COG1173 88 AVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLVRAQVLSL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 163 TNEPSVQFAKVSGGSPFYILRKHLFPRISGEIAVFATLDAGWVILNISALSFLGLGVSAPTPEWGMMLNEAKNVMVTHPA 242
Cdd:COG1173 168 REREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEGRNYLLTAPW 247
|
250 260
....*....|....*....|....*...
gi 2208067125 243 HMLPPGLAILFVVMALNFLGDSLQQVMN 270
Cdd:COG1173 248 LALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
13-266 |
2.19e-101 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 297.37 E-value: 2.19e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 13 AILSIWLLVLVTLAGLFAPFLAPHDPTDTNILQKYAGVSLTYPLGTDQLGRCVLSRLLYGIRTTMLAAVLTMCITMFIGT 92
Cdd:TIGR02790 1 VVSALLIIAVLFLLAIFAPWIAPHDPLAQNLPMRLLGPSMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTIGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 93 ILGLVAGFFRGKVDGALMRICDVMLSFPAEVMILAVVGIMGPGLFNIILANVLAKWAWYTRMIRSSVLQYTNEPSVQFAK 172
Cdd:TIGR02790 81 LIGGLAGYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQREFVLAAR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 173 VSGGSPFYILRKHLFPRISGEIAVFATLDAGWVILNISALSFLGLGVSAPTPEWGMMLNEAKNVMVTHPAHMLPPGLAIL 252
Cdd:TIGR02790 161 TSGASHWQIIRRHILPNILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIYPGLAIL 240
|
250
....*....|....
gi 2208067125 253 FVVMALNFLGDSLQ 266
Cdd:TIGR02790 241 ISVMAFNLLGDALR 254
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
14-273 |
4.66e-82 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 248.43 E-value: 4.66e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 14 ILSIWLLVLVTLAGLFAPFLAPHDPTDTNILQKYAGVSLTYPLGTDQLGRCVLSRLLYGIRTTMLAAVLTMCITMFIGTI 93
Cdd:PRK10417 7 RLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAGTRVSLGSVMACLLLVLALGLV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 94 LGLVAGFFRGKVDGALMRICDVMLSFPAEVMILAVVGIMGPGLFNIILANVLAKWAWYTRMIRSSVLQYTNEPSVQFAKV 173
Cdd:PRK10417 87 IGGSAGLLGGRVDQATMRVADMFMTFPTSILAFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLAARL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 174 SGGSPFYILRKHLFPRISGEIAVFATLDAGWVILNISALSFLGLGVSAPTPEWGMMLNEAKNVMVTHPAHMLPPGLAILF 253
Cdd:PRK10417 167 SGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIWTQPLLMFWPGLALFI 246
|
250 260
....*....|....*....|
gi 2208067125 254 VVMALNFLGDSLQQVMNPAM 273
Cdd:PRK10417 247 SVMAFNLLGDALRDHLDPHL 266
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
73-265 |
4.17e-17 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 77.70 E-value: 4.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 73 IRTTMLAAVLTMCITMFIGTILGLVAGFFRGKVDGALMRICDVMLSFPAEVMILAVVGIMG--------PGLFNIILANV 144
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGvllgwgilPGLGLPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 145 LAKWAWYTRMIRSSVLQYTNEPSVQFAKVSGGSPFYILRKHLFPRISGEIAVFATLDAGWVILNISALSFLGLGVsAPTP 224
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE-APGP 159
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2208067125 225 EWGMMLNEAKNVmvthpahmlpPGLAILFVVMALNFLGDSL 265
Cdd:cd06261 160 GTGLLLIFAILF----------PGDLGVAAAVALILLLLSL 190
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
91-273 |
1.16e-15 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 73.49 E-value: 1.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 91 GTILGLVAGFFRGK-VDGALMRICDVMLSFPAEVMILAVVGIMGPGLFNIILANVLA----KWAWYTRMIRSSVLQYTNE 165
Cdd:pfam00528 1 GIPLGIIAALRRGRrLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIIlallGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 166 PSVQFAKVSGGSPFYILRKHLFPRISGEIAVFATLDAGWVILNISALSFL----GLGVSAPTPEWGMMLNEaknvmvthp 241
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPE--------- 151
|
170 180 190
....*....|....*....|....*....|..
gi 2208067125 242 ahMLPPGLAILFVVMALNFLGDSLQQVMNPAM 273
Cdd:pfam00528 152 --IQGPVLAAALILLLLNLLVDILQRLLDPRV 181
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
3-270 |
9.18e-109 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 316.28 E-value: 9.18e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 3 VWNQLRKDRMAILSIWLLVLVTLAGLFAPFLAPHDPTDTNILQKYAGVSLTYPLGTDQLGRCVLSRLLYGIRTTMLAAVL 82
Cdd:COG1173 8 AWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARISLLVGLL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 83 TMCITMFIGTILGLVAGFFRGKVDGALMRICDVMLSFPAEVMILAVVGIMGPGLFNIILANVLAKWAWYTRMIRSSVLQY 162
Cdd:COG1173 88 AVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLVRAQVLSL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 163 TNEPSVQFAKVSGGSPFYILRKHLFPRISGEIAVFATLDAGWVILNISALSFLGLGVSAPTPEWGMMLNEAKNVMVTHPA 242
Cdd:COG1173 168 REREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEGRNYLLTAPW 247
|
250 260
....*....|....*....|....*...
gi 2208067125 243 HMLPPGLAILFVVMALNFLGDSLQQVMN 270
Cdd:COG1173 248 LALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
13-266 |
2.19e-101 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 297.37 E-value: 2.19e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 13 AILSIWLLVLVTLAGLFAPFLAPHDPTDTNILQKYAGVSLTYPLGTDQLGRCVLSRLLYGIRTTMLAAVLTMCITMFIGT 92
Cdd:TIGR02790 1 VVSALLIIAVLFLLAIFAPWIAPHDPLAQNLPMRLLGPSMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTIGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 93 ILGLVAGFFRGKVDGALMRICDVMLSFPAEVMILAVVGIMGPGLFNIILANVLAKWAWYTRMIRSSVLQYTNEPSVQFAK 172
Cdd:TIGR02790 81 LIGGLAGYIGGRVDEAIMRVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQREFVLAAR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 173 VSGGSPFYILRKHLFPRISGEIAVFATLDAGWVILNISALSFLGLGVSAPTPEWGMMLNEAKNVMVTHPAHMLPPGLAIL 252
Cdd:TIGR02790 161 TSGASHWQIIRRHILPNILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIYPGLAIL 240
|
250
....*....|....
gi 2208067125 253 FVVMALNFLGDSLQ 266
Cdd:TIGR02790 241 ISVMAFNLLGDALR 254
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
14-273 |
4.66e-82 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 248.43 E-value: 4.66e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 14 ILSIWLLVLVTLAGLFAPFLAPHDPTDTNILQKYAGVSLTYPLGTDQLGRCVLSRLLYGIRTTMLAAVLTMCITMFIGTI 93
Cdd:PRK10417 7 RLALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAGTRVSLGSVMACLLLVLALGLV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 94 LGLVAGFFRGKVDGALMRICDVMLSFPAEVMILAVVGIMGPGLFNIILANVLAKWAWYTRMIRSSVLQYTNEPSVQFAKV 173
Cdd:PRK10417 87 IGGSAGLLGGRVDQATMRVADMFMTFPTSILAFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLAARL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 174 SGGSPFYILRKHLFPRISGEIAVFATLDAGWVILNISALSFLGLGVSAPTPEWGMMLNEAKNVMVTHPAHMLPPGLAILF 253
Cdd:PRK10417 167 SGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIWTQPLLMFWPGLALFI 246
|
250 260
....*....|....*....|
gi 2208067125 254 VVMALNFLGDSLQQVMNPAM 273
Cdd:PRK10417 247 SVMAFNLLGDALRDHLDPHL 266
|
|
| PRK15082 |
PRK15082 |
glutathione ABC transporter permease GsiD; Provisional |
4-273 |
2.08e-61 |
|
glutathione ABC transporter permease GsiD; Provisional
Pssm-ID: 185040 [Multi-domain] Cd Length: 301 Bit Score: 196.87 E-value: 2.08e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 4 WNQLRKDRMAILSIWLLVLVTLAGLFAPFLAPHDPT---DTNILQkyAGVSLTYPLGTDQLGRCVLSRLLYGIRTTMLAA 80
Cdd:PRK15082 29 WRRFRRQHVALVAGLFVLLLIVVAIFAPWIAPYDAEnyfDYDALN--AGPSLQHWFGVDSLGRDIFSRILVGARISLAAG 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 81 VLTMCITMFIGTILGLVAGFFRGKVDGALMRICDVMLSFPAEVMILAVVGIMGPGLFNIILANVLAKWAWYTRMIRSSVL 160
Cdd:PRK15082 107 FFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILGSGMANVIIAVAIFSIPAFARLVRGNTL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 161 QYTNEPSVQFAKVSGGSPFYILRKHLFPRISGEIAVFATLDAGWVILNISALSFLGLGVSAPTPEWGMMLNEAKNVMVTH 240
Cdd:PRK15082 187 VLKQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGLGAQPPTPEWGAMLNEARADMVIA 266
|
250 260 270
....*....|....*....|....*....|...
gi 2208067125 241 PAHMLPPGLAILFVVMALNFLGDSLQQVMNPAM 273
Cdd:PRK15082 267 PHVALFPSLAIFLTVLAFNLLGDGLRDALDPKI 299
|
|
| PRK09881 |
PRK09881 |
D,D-dipeptide ABC transporter permease; |
7-271 |
5.54e-54 |
|
D,D-dipeptide ABC transporter permease;
Pssm-ID: 182131 [Multi-domain] Cd Length: 296 Bit Score: 177.32 E-value: 5.54e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 7 LRKDRMAILSIWLLVLVTLAGLFAPFLAPHDPTDTNILQKYAGVSLTYPLGTDQLGRCVLSRLLYGIRTTMLAAVLTMCI 86
Cdd:PRK09881 27 LKGSPLTVTGAVIIVLMLLMMIFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 87 TMFIGTILGLVAGFFRGKVDGALMRICDVMLSFPAEVMILAVVGIMGPGLFNIILANVLAKWAWYTRMIRSSVLQYTNEP 166
Cdd:PRK09881 107 AGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYT 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 167 SVQFAKVSGGSPFYILRKHLFPRISGEIAVFATLDAGWVILNISALSFLGLGVSAPTPEWGMMLNEAKNVMVTHPAHMLP 246
Cdd:PRK09881 187 YVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAF 266
|
250 260
....*....|....*....|....*
gi 2208067125 247 PGLAILFVVMALNFLGDSLQQVMNP 271
Cdd:PRK09881 267 PGAAILLTAVGFNLFGDGIRDLLDP 291
|
|
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
4-273 |
9.12e-50 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 166.88 E-value: 9.12e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 4 WNQLRKDRMAILSIWLLVLVTLAGLFAPFLAPHDPTDT--NILQK----YAGVSLTYPLGTDQLGRCVLSRLLYGIRTTM 77
Cdd:PRK10913 23 WHYFKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEQfrDALLAppvwQEGGSWAHILGTDDVGRDVLSRLMYGARLSL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 78 LAAVLTMCITMFIGTILGLVAGFFRGKVDGALMRICDVMLSFPAEVMILAVVGIMGPGLFNIILANVLAKWAWYTRMIRS 157
Cdd:PRK10913 103 LVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIVNAALALTFVALPHYVRLTRA 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 158 SVLQYTNEPSVQFAKVSGGSPFYILRKHLFPRISGEIAVFATLDAGWVILNISALSFLGLGVSAPTPEWGMMLNEAKNVM 237
Cdd:PRK10913 183 AVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFA 262
|
250 260 270
....*....|....*....|....*....|....*.
gi 2208067125 238 VTHPAHMLPPGLAILFVVMALNFLGDSLQQVMNPAM 273
Cdd:PRK10913 263 QSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKL 298
|
|
| PRK15406 |
PRK15406 |
oligopeptide ABC transporter permease OppC; Provisional |
3-271 |
3.66e-37 |
|
oligopeptide ABC transporter permease OppC; Provisional
Pssm-ID: 185304 [Multi-domain] Cd Length: 302 Bit Score: 133.81 E-value: 3.66e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 3 VWNQLRK----DRMAILSIWLLVLVTLAGLFAPFLAP--HDPTDTNILQKYAGVSLTYPLGTDQLGRCVLSRLLYGIRTT 76
Cdd:PRK15406 25 LWQDARRrfmhNRAAVASLIVLVLIALFVILAPMLSQfaYDDTDWGMMSSAPDMESGHYFGTDSSGRDLLVRVAIGGRIS 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 77 MLAAVLTMCITMFIGTILGLVAGFFRGKVDGALMRICDVMLSFPAEVMILAVVGIMGPGLFNIILANVLAKWAWYTRMIR 156
Cdd:PRK15406 105 LMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVR 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 157 SSVLQYTNEPSVQFAKVSGGSPFYILRKHLFPRISGEIAVFATLDAGWVILNISALSFLGLGVSAPTPEWGMMLNEAKNV 236
Cdd:PRK15406 185 GQTLSLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANS 264
|
250 260 270
....*....|....*....|....*....|....*
gi 2208067125 237 MVTHPAHMLPPGLAILFVVMALNFLGDSLQQVMNP 271
Cdd:PRK15406 265 MEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDP 299
|
|
| PRK15111 |
PRK15111 |
peptide ABC transporter permease SapC; |
3-270 |
4.28e-37 |
|
peptide ABC transporter permease SapC;
Pssm-ID: 185066 [Multi-domain] Cd Length: 296 Bit Score: 133.67 E-value: 4.28e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 3 VWNQLRKDRMAILSIWLLVLVTLAGLFAPFLAPHdptdtNILQKYAGVSLTYP-----------LGTDQLGRCVLSRLLY 71
Cdd:PRK15111 19 AWRKFYSDALAMVGLYGCAGLALLCLFGGWLAPY-----GIDQQFLGYQLLPPswsrygevsffLGTDDLGRDVLSRLLS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 72 GIRTTMLAAVLTMCITMFIGTILGLVAGFFRGKVDGALMRICDVMLSFPAEVMILAVVGIMGPGLFNIILANVLAKWAWY 151
Cdd:PRK15111 94 GAAPTVGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLSHAMFAVWLALLPRM 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 152 TRMIRSSVLQYTNEPSVQFAKVSGGSPFYILRKHLFPRISGEIAVFATLDAGWVILNISALSFLGLGVSAPTPEWGMMLN 231
Cdd:PRK15111 174 VRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAMLG 253
|
250 260 270
....*....|....*....|....*....|....*....
gi 2208067125 232 EAKNVMVTHPAHMLPPGLAILFVVMALNFLGDSLQQVMN 270
Cdd:PRK15111 254 DSLELIYVAPWTVMLPGAAIMLSVLLVNLLGDGIRRAII 292
|
|
| PRK15021 |
PRK15021 |
microcin C ABC transporter permease; Provisional |
56-272 |
2.86e-17 |
|
microcin C ABC transporter permease; Provisional
Pssm-ID: 184982 [Multi-domain] Cd Length: 341 Bit Score: 80.80 E-value: 2.86e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 56 LGTDQLGRCVLSRLLYGIRTTMLAAVLTMCITMFIGTILGLVAGFFRGKVDGALMRICDVMLSFPAEVMILAVVGIMGPG 135
Cdd:PRK15021 123 LGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILLSSVVQPN 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 136 LFNIILANVLAKWAWYTRMIRSSVLQYTNEPSVQFAKVSGGSPFYILRKHLFPRisgeiAVFATLDAGWVIL-----NIS 210
Cdd:PRK15021 203 FWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPN-----AMVATLTFLPFILcssitTLT 277
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2208067125 211 ALSFLGLGVSAPTPEWGMMLNEAKNVMVThPAHMLPPGLAILFVVMALNFLGDSLQQVMNPA 272
Cdd:PRK15021 278 SLDFLGFGLPLGSPSLGELLLQGKNNLQA-PWLGITAFLSVAILLSLLIFIGEAVRDAFDPN 338
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
73-265 |
4.17e-17 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 77.70 E-value: 4.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 73 IRTTMLAAVLTMCITMFIGTILGLVAGFFRGKVDGALMRICDVMLSFPAEVMILAVVGIMG--------PGLFNIILANV 144
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGvllgwgilPGLGLPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 145 LAKWAWYTRMIRSSVLQYTNEPSVQFAKVSGGSPFYILRKHLFPRISGEIAVFATLDAGWVILNISALSFLGLGVsAPTP 224
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGE-APGP 159
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2208067125 225 EWGMMLNEAKNVmvthpahmlpPGLAILFVVMALNFLGDSL 265
Cdd:cd06261 160 GTGLLLIFAILF----------PGDLGVAAAVALILLLLSL 190
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
91-273 |
1.16e-15 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 73.49 E-value: 1.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 91 GTILGLVAGFFRGK-VDGALMRICDVMLSFPAEVMILAVVGIMGPGLFNIILANVLA----KWAWYTRMIRSSVLQYTNE 165
Cdd:pfam00528 1 GIPLGIIAALRRGRrLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIIlallGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 166 PSVQFAKVSGGSPFYILRKHLFPRISGEIAVFATLDAGWVILNISALSFL----GLGVSAPTPEWGMMLNEaknvmvthp 241
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPE--------- 151
|
170 180 190
....*....|....*....|....*....|..
gi 2208067125 242 ahMLPPGLAILFVVMALNFLGDSLQQVMNPAM 273
Cdd:pfam00528 152 --IQGPVLAAALILLLLNLLVDILQRLLDPRV 181
|
|
| OppC_N |
pfam12911 |
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ... |
3-49 |
7.90e-09 |
|
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.
Pssm-ID: 463747 [Multi-domain] Cd Length: 53 Bit Score: 50.87 E-value: 7.90e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 2208067125 3 VWNQLRKDRMAILSIWLLVLVTLAGLFAPFLAPHDPTDTNILQKYAG 49
Cdd:pfam12911 6 AWRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYDPDQQDLSADLLP 52
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
49-206 |
9.26e-09 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 55.46 E-value: 9.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 49 GVSLTYplgtdqlGRCVLSRLLYGIRTTMLAAVLTMCITMFIGTILGLVAGFFRGK-VDGALMRICDVMLSFPaeVMILA 127
Cdd:COG0601 78 GTSFVY-------GRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSwLDRLITVLALLGISIP--SFWLG 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2208067125 128 VVGIM---------------------GPGLFNIIL---ANVLAKWAWYTRMIRSSVLQYTNEPSVQFAKVSGGSPFYILR 183
Cdd:COG0601 149 LLLILlfavklgwlpvsgrvspwedfLDALRHLILpalTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLL 228
|
170 180
....*....|....*....|...
gi 2208067125 184 KHLFPRISGEIAVFATLDAGWVI 206
Cdd:COG0601 229 RHALRNALIPVVTVLGLQLGGLL 251
|
|
| |
