NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2252308999|gb|URQ63022|]
View 

SDR family oxidoreductase [SAR86 cluster bacterium]

Protein Classification

Rossmann-fold NAD(P)-binding domain-containing protein( domain architecture ID 229380)

Rossmann-fold NAD(P)-binding domain-containing protein may function as an oxidoreductase

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
NADB_Rossmann super family cl21454
Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a ...
1-60 1.31e-18

Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD(P)H/NAD(P)(+) binding (NADB) domain. The NADB domain is found in numerous dehydrogenases of metabolic pathways such as glycolysis, and many other redox enzymes. NAD binding involves numerous hydrogen-bonds and van der Waals contacts, in particular H-bonding of residues in a turn between the first strand and the subsequent helix of the Rossmann-fold topology. Characteristically, this turn exhibits a consensus binding pattern similar to GXGXXG, in which the first 2 glycines participate in NAD(P)-binding, and the third facilitates close packing of the helix to the beta-strand. Typically, proteins in this family contain a second domain in addition to the NADB domain, which is responsible for specifically binding a substrate and catalyzing a particular enzymatic reaction.


The actual alignment was detected with superfamily member PRK07069:

Pssm-ID: 473865 [Multi-domain]  Cd Length: 251  Bit Score: 75.52  E-value: 1.31e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2252308999   1 MMQAFFENASEE-LLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK07069  190 IVDPIFQRLGEEeATRKLARGVPLGRLGEPDDVAHAVLYLASDESRFVTGAELVIDGGICA 250
 
Name Accession Description Interval E-value
PRK07069 PRK07069
short chain dehydrogenase; Validated
1-60 1.31e-18

short chain dehydrogenase; Validated


Pssm-ID: 180822 [Multi-domain]  Cd Length: 251  Bit Score: 75.52  E-value: 1.31e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2252308999   1 MMQAFFENASEE-LLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK07069  190 IVDPIFQRLGEEeATRKLARGVPLGRLGEPDDVAHAVLYLASDESRFVTGAELVIDGGICA 250
adh_short_C2 pfam13561
Enoyl-(Acyl carrier protein) reductase; This domain is found in Enoyl-(Acyl carrier protein) ...
11-59 1.15e-14

Enoyl-(Acyl carrier protein) reductase; This domain is found in Enoyl-(Acyl carrier protein) reductases.


Pssm-ID: 433310 [Multi-domain]  Cd Length: 236  Bit Score: 64.76  E-value: 1.15e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2252308999  11 EELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:pfam13561 188 DELLAAAEARAPLGRLGTPEEVANAAAFLASDLASYITGQVLYVDGGYT 236
FabG COG1028
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lipid transport and ...
1-60 8.25e-14

NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lipid transport and metabolism]; NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440651 [Multi-domain]  Cd Length: 249  Bit Score: 62.50  E-value: 8.25e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252308999   1 MMQAFFENasEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:COG1028   192 MTRALLGA--EEVREALAARIPLGRLGTPEEVAAAVLFLASDAASYITGQVLAVDGGLTA 249
XR_like_SDR_c cd05351
xylulose reductase-like, classical (c) SDRs; Members of this subgroup include proteins ...
15-60 6.30e-12

xylulose reductase-like, classical (c) SDRs; Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser).


Pssm-ID: 187609 [Multi-domain]  Cd Length: 244  Bit Score: 57.48  E-value: 6.30e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2252308999  15 GKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:cd05351   198 KKMLNRIPLGKFAEVEDVVNAILFLLSDKSSMTTGSTLPVDGGFLA 243
pter_reduc_Leis TIGR02685
pteridine reductase; Pteridine reductase is an enzyme used by trypanosomatids (including ...
11-59 7.56e-05

pteridine reductase; Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.


Pssm-ID: 131732 [Multi-domain]  Cd Length: 267  Bit Score: 37.99  E-value: 7.56e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2252308999  11 EELLGKLEKQIPI-RKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:TIGR02685 214 FEVQEDYRRKVPLgQREASAEQIADVVIFLVSPKAKYITGTCIKVDGGLS 263
 
Name Accession Description Interval E-value
PRK07069 PRK07069
short chain dehydrogenase; Validated
1-60 1.31e-18

short chain dehydrogenase; Validated


Pssm-ID: 180822 [Multi-domain]  Cd Length: 251  Bit Score: 75.52  E-value: 1.31e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2252308999   1 MMQAFFENASEE-LLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK07069  190 IVDPIFQRLGEEeATRKLARGVPLGRLGEPDDVAHAVLYLASDESRFVTGAELVIDGGICA 250
adh_short_C2 pfam13561
Enoyl-(Acyl carrier protein) reductase; This domain is found in Enoyl-(Acyl carrier protein) ...
11-59 1.15e-14

Enoyl-(Acyl carrier protein) reductase; This domain is found in Enoyl-(Acyl carrier protein) reductases.


Pssm-ID: 433310 [Multi-domain]  Cd Length: 236  Bit Score: 64.76  E-value: 1.15e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2252308999  11 EELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:pfam13561 188 DELLAAAEARAPLGRLGTPEEVANAAAFLASDLASYITGQVLYVDGGYT 236
FabG-like PRK07231
SDR family oxidoreductase;
1-61 1.96e-14

SDR family oxidoreductase;


Pssm-ID: 235975 [Multi-domain]  Cd Length: 251  Bit Score: 64.08  E-value: 1.96e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2252308999   1 MMQAFFENASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSAQ 61
Cdd:PRK07231  191 LLEAFMGEPTPENRAKFLATIPLGRLGTPEDIANAALFLASDEASWITGVTLVVDGGRCVG 251
FabG COG1028
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lipid transport and ...
1-60 8.25e-14

NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lipid transport and metabolism]; NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440651 [Multi-domain]  Cd Length: 249  Bit Score: 62.50  E-value: 8.25e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252308999   1 MMQAFFENasEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:COG1028   192 MTRALLGA--EEVREALAARIPLGRLGTPEEVAAAVLFLASDAASYITGQVLAVDGGLTA 249
PRK07060 PRK07060
short chain dehydrogenase; Provisional
21-60 1.07e-13

short chain dehydrogenase; Provisional


Pssm-ID: 180817 [Multi-domain]  Cd Length: 245  Bit Score: 62.42  E-value: 1.07e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2252308999  21 IPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK07060  205 IPLGRFAEVDDVAAPILFLLSDAASMVSGVSLPVDGGYTA 244
PRK06841 PRK06841
short chain dehydrogenase; Provisional
17-61 6.17e-12

short chain dehydrogenase; Provisional


Pssm-ID: 180723 [Multi-domain]  Cd Length: 255  Bit Score: 57.75  E-value: 6.17e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2252308999  17 LEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSAQ 61
Cdd:PRK06841  211 AKKLIPAGRFAYPEEIAAAALFLASDAAAMITGENLVIDGGYTIQ 255
XR_like_SDR_c cd05351
xylulose reductase-like, classical (c) SDRs; Members of this subgroup include proteins ...
15-60 6.30e-12

xylulose reductase-like, classical (c) SDRs; Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser).


Pssm-ID: 187609 [Multi-domain]  Cd Length: 244  Bit Score: 57.48  E-value: 6.30e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2252308999  15 GKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:cd05351   198 KKMLNRIPLGKFAEVEDVVNAILFLLSDKSSMTTGSTLPVDGGFLA 243
BKR_3_SDR_c cd05345
putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) ...
1-57 8.34e-12

putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR; This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187603 [Multi-domain]  Cd Length: 248  Bit Score: 57.01  E-value: 8.34e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2252308999   1 MMQAFFENASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:cd05345   189 LLSMFMGEDTPENRAKFRATIPLGRLSTPDDIANAALYLASDEASFITGVALEVDGG 245
BKR_SDR_c cd05333
beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; ...
10-58 1.75e-11

beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187594 [Multi-domain]  Cd Length: 240  Bit Score: 56.02  E-value: 1.75e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2252308999  10 SEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGL 58
Cdd:cd05333   191 PEKVKEKILKQIPLGRLGTPEEVANAVAFLASDDASYITGQVLHVNGGM 239
fabG PRK05653
3-oxoacyl-ACP reductase FabG;
7-59 2.28e-11

3-oxoacyl-ACP reductase FabG;


Pssm-ID: 235546 [Multi-domain]  Cd Length: 246  Bit Score: 55.94  E-value: 2.28e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2252308999   7 ENASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:PRK05653  193 EGLPEEVKAEILKEIPLGRLGQPEEVANAVAFLASDAASYITGQVIPVNGGMY 245
GlcDH_SDR_c cd05358
glucose 1 dehydrogenase (GlcDH), classical (c) SDRs; GlcDH, is a tetrameric member of the SDR ...
11-59 3.72e-11

glucose 1 dehydrogenase (GlcDH), classical (c) SDRs; GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187616 [Multi-domain]  Cd Length: 253  Bit Score: 55.47  E-value: 3.72e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2252308999  11 EELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:cd05358   199 PEQRADLLSLIPMGRIGEPEEIAAAAAWLASDEASYVTGTTLFVDGGMT 247
PRK06500 PRK06500
SDR family oxidoreductase;
7-59 4.83e-11

SDR family oxidoreductase;


Pssm-ID: 235816 [Multi-domain]  Cd Length: 249  Bit Score: 54.96  E-value: 4.83e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2252308999   7 ENASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:PRK06500  195 EATLDAVAAQIQALVPLGRFGTPEEIAKAVLYLASDESAFIVGSEIIVDGGMS 247
3beta-17beta-HSD_like_SDR_c cd05341
3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; This subgroup includes ...
17-61 1.02e-10

3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs; This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187600 [Multi-domain]  Cd Length: 247  Bit Score: 54.31  E-value: 1.02e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2252308999  17 LEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSAQ 61
Cdd:cd05341   203 NYPNTPMGRAGEPDEIAYAVVYLASDESSFVTGSELVVDGGYTAG 247
PRK06523 PRK06523
short chain dehydrogenase; Provisional
21-57 1.15e-10

short chain dehydrogenase; Provisional


Pssm-ID: 180604 [Multi-domain]  Cd Length: 260  Bit Score: 54.14  E-value: 1.15e-10
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2252308999  21 IPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK06523  219 IPLGRPAEPEEVAELIAFLASDRAASITGTEYVIDGG 255
ChcA_like_SDR_c cd05359
1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs; This subgroup ...
2-59 1.72e-10

1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs; This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187617 [Multi-domain]  Cd Length: 242  Bit Score: 53.51  E-value: 1.72e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2252308999   2 MQAFFENAsEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:cd05359   185 ALAHFPNR-EDLLEAAAANTPAGRVGTPQDVADAVGFLCSDAARMITGQTLVVDGGLS 241
PRK12826 PRK12826
SDR family oxidoreductase;
1-57 3.09e-10

SDR family oxidoreductase;


Pssm-ID: 183775 [Multi-domain]  Cd Length: 251  Bit Score: 53.00  E-value: 3.09e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2252308999   1 MMQAFFENASEELLGKlekQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK12826  193 MAGNLGDAQWAEAIAA---AIPLGRLGEPEDIAAAVLFLASDEARYITGQTLPVDGG 246
fabG PRK05565
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
1-60 3.19e-10

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 235506 [Multi-domain]  Cd Length: 247  Bit Score: 52.92  E-value: 3.19e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252308999   1 MMQAFfenaSEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK05565  192 MWSSF----SEEDKEGLAEEIPLGRLGKPEEIAKVVLFLASDDASYITGQIITVDGGWTC 247
PRK08063 PRK08063
enoyl-[acyl-carrier-protein] reductase FabL;
5-59 3.81e-10

enoyl-[acyl-carrier-protein] reductase FabL;


Pssm-ID: 236145 [Multi-domain]  Cd Length: 250  Bit Score: 52.80  E-value: 3.81e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2252308999   5 FFENAsEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:PRK08063  194 HFPNR-EELLEDARAKTPAGRMVEPEDVANAVLFLCSPEADMIRGQTIIVDGGRS 247
fabG PRK12825
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
7-58 3.91e-10

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 237218 [Multi-domain]  Cd Length: 249  Bit Score: 52.56  E-value: 3.91e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2252308999   7 ENASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGL 58
Cdd:PRK12825  195 EATIEEAREAKDAETPLGRSGTPEDIARAVAFLCSDASDYITGQVIEVTGGV 246
fabG PRK05557
3-ketoacyl-(acyl-carrier-protein) reductase; Validated
6-61 8.41e-10

3-ketoacyl-(acyl-carrier-protein) reductase; Validated


Pssm-ID: 235500 [Multi-domain]  Cd Length: 248  Bit Score: 51.73  E-value: 8.41e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2252308999   6 FENASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSAQ 61
Cdd:PRK05557  193 TDALPEDVKEAILAQIPLGRLGQPEEIASAVAFLASDEAAYITGQTLHVNGGMVMG 248
SDR_c8 cd08930
classical (c) SDR, subgroup 8; This subgroup has a fairly well conserved active site tetrad ...
5-57 9.59e-10

classical (c) SDR, subgroup 8; This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187635 [Multi-domain]  Cd Length: 250  Bit Score: 51.57  E-value: 9.59e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2252308999   5 FFENASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:cd08930   198 ILNNQPSEFLEKYTKKCPLKRMLNPEDLRGAIIFLLSDASSYVTGQNLVIDGG 250
PRK06138 PRK06138
SDR family oxidoreductase;
22-61 9.82e-10

SDR family oxidoreductase;


Pssm-ID: 235712 [Multi-domain]  Cd Length: 252  Bit Score: 51.69  E-value: 9.82e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2252308999  22 PIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSAQ 61
Cdd:PRK06138  213 PMNRFGTAEEVAQAALFLASDESSFATGTTLVVDGGWLAA 252
BKR_like_SDR_like cd05344
putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR; This subgroup ...
11-59 9.94e-10

putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR; This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187602 [Multi-domain]  Cd Length: 253  Bit Score: 51.51  E-value: 9.94e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2252308999  11 EELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:cd05344   204 EEAEKEVASQIPLGRVGKPEELAALIAFLASEKASYITGQAILVDGGLT 252
BKR_2_SDR_c cd05349
putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) ...
7-58 1.58e-09

putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR; This subgroup includes Rhizobium sp. NGR234 FabG1. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187607 [Multi-domain]  Cd Length: 246  Bit Score: 50.92  E-value: 1.58e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2252308999   7 ENASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGL 58
Cdd:cd05349   193 AATPKEVFDAIAQTTPLGKVTTPQDIADAVLFFASPWARAVTGQNLVVDGGL 244
PRK06057 PRK06057
short chain dehydrogenase; Provisional
21-60 2.45e-09

short chain dehydrogenase; Provisional


Pssm-ID: 180371 [Multi-domain]  Cd Length: 255  Bit Score: 50.50  E-value: 2.45e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2252308999  21 IPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK06057  210 VPMGRFAEPEEIAAAVAFLASDDASFITASTFLVDGGISG 249
PRK07074 PRK07074
SDR family oxidoreductase;
17-60 2.76e-09

SDR family oxidoreductase;


Pssm-ID: 180823 [Multi-domain]  Cd Length: 257  Bit Score: 50.54  E-value: 2.76e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2252308999  17 LEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK07074  200 LKKWYPLQDFATPDDVANAVLFLASPAARAITGVCLPVDGGLTA 243
PRK08220 PRK08220
2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
21-57 2.96e-09

2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated


Pssm-ID: 236190 [Multi-domain]  Cd Length: 252  Bit Score: 50.27  E-value: 2.96e-09
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2252308999  21 IPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK08220  211 IPLGKIARPQEIANAVLFLASDLASHITLQDIVVDGG 247
PRK07576 PRK07576
short chain dehydrogenase; Provisional
9-59 4.52e-09

short chain dehydrogenase; Provisional


Pssm-ID: 236056 [Multi-domain]  Cd Length: 264  Bit Score: 49.95  E-value: 4.52e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2252308999   9 ASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:PRK07576  201 PSPELQAAVAQSVPLKRNGTKQDIANAALFLASDMASYITGVVLPVDGGWS 251
fabG PRK08642
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
10-58 4.61e-09

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 181517 [Multi-domain]  Cd Length: 253  Bit Score: 49.70  E-value: 4.61e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2252308999  10 SEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGL 58
Cdd:PRK08642  202 PDEVFDLIAATTPLRKVTTPQEFADAVLFFASPWARAVTGQNLVVDGGL 250
DH-DHB-DH_SDR_c cd05331
2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs; 2,3 dihydro-2,3 ...
7-57 7.74e-09

2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs; 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187592 [Multi-domain]  Cd Length: 244  Bit Score: 49.00  E-value: 7.74e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2252308999   7 ENASEELL-GKLEK---QIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:cd05331   185 EDGAAQVIaGVPEQfrlGIPLGKIAQPADIANAVLFLASDQAGHITMHDLVVDGG 239
TER_DECR_SDR_a cd05369
Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR; TTER ...
10-57 1.17e-08

Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR; TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187627 [Multi-domain]  Cd Length: 249  Bit Score: 48.74  E-value: 1.17e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2252308999  10 SEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:cd05369   199 SGKSEKKMIERVPLGRLGTPEEIANLALFLLSDAASYINGTTLVVDGG 246
SDR_c11 cd05364
classical (c) SDR, subgroup 11; SDRs are a functionally diverse family of oxidoreductases that ...
7-60 1.24e-08

classical (c) SDR, subgroup 11; SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187622 [Multi-domain]  Cd Length: 253  Bit Score: 48.56  E-value: 1.24e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2252308999   7 ENASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:cd05364   199 EEQYIKFLSRAKETHPLGRPGTVDEVAEAIAFLASDASSFITGQLLPVDGGRHL 252
PRK07035 PRK07035
SDR family oxidoreductase;
3-58 2.05e-08

SDR family oxidoreductase;


Pssm-ID: 180802 [Multi-domain]  Cd Length: 252  Bit Score: 48.09  E-value: 2.05e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2252308999   3 QAFFENasEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGL 58
Cdd:PRK07035  197 SALFKN--DAILKQALAHIPLRRHAEPSEMAGAVLYLASDASSYTTGECLNVDGGY 250
SDR_c cd05233
classical (c) SDRs; SDRs are a functionally diverse family of oxidoreductases that have a ...
1-55 2.88e-08

classical (c) SDRs; SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 212491 [Multi-domain]  Cd Length: 234  Bit Score: 47.28  E-value: 2.88e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2252308999   1 MMQAFFEnasEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVID 55
Cdd:cd05233   183 MLAKLGP---EEAEKELAAAIPLGRLGTPEEVAEAVVFLASDEASYITGQVIPVD 234
PRK07814 PRK07814
SDR family oxidoreductase;
9-60 3.99e-08

SDR family oxidoreductase;


Pssm-ID: 181131 [Multi-domain]  Cd Length: 263  Bit Score: 47.08  E-value: 3.99e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2252308999   9 ASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK07814  202 ANDELRAPMEKATPLRRLGDPEDIAAAAVYLASPAGSYLTGKTLEVDGGLTF 253
DHRS6_like_SDR_c cd05368
human DHRS6-like, classical (c) SDRs; Human DHRS6, and similar proteins. These proteins are ...
11-59 4.49e-08

human DHRS6-like, classical (c) SDRs; Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P).


Pssm-ID: 187626 [Multi-domain]  Cd Length: 241  Bit Score: 47.08  E-value: 4.49e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2252308999  11 EELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:cd05368   192 EEALKAFAARQPLGRLATPEEVAALAVYLASDESAYVTGTAVVIDGGWS 240
PRK08213 PRK08213
gluconate 5-dehydrogenase; Provisional
1-60 4.97e-08

gluconate 5-dehydrogenase; Provisional


Pssm-ID: 181295 [Multi-domain]  Cd Length: 259  Bit Score: 46.86  E-value: 4.97e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252308999   1 MMQAFFENASEELLGklekQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK08213  203 MTRGTLERLGEDLLA----HTPLGRLGDDEDLKGAALLLASDASKHITGQILAVDGGVSA 258
secoisolariciresinol-DH_like_SDR_c cd05326
secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs; ...
31-59 5.85e-08

secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs; Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187587 [Multi-domain]  Cd Length: 249  Bit Score: 46.68  E-value: 5.85e-08
                          10        20
                  ....*....|....*....|....*....
gi 2252308999  31 DVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:cd05326   221 DIAAAVLYLASDDSRYVSGQNLVVDGGLT 249
PRK12829 PRK12829
short chain dehydrogenase; Provisional
11-58 7.22e-08

short chain dehydrogenase; Provisional


Pssm-ID: 183778 [Multi-domain]  Cd Length: 264  Bit Score: 46.59  E-value: 7.22e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2252308999  11 EELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGL 58
Cdd:PRK12829  214 DEMEQEYLEKISLGRMVEPEDIAATALFLASPAARYITGQAISVDGNV 261
HBDH_SDR_c cd08940
d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs; DHBDH, an NAD+ -dependent enzyme, ...
6-61 7.73e-08

d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs; DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187644 [Multi-domain]  Cd Length: 258  Bit Score: 46.29  E-value: 7.73e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2252308999   6 FENASEELLgkLEKQiPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSAQ 61
Cdd:cd08940   206 QEQAARELL--LEKQ-PSKQFVTPEQLGDTAVFLASDAASQITGTAVSVDGGWTAQ 258
PRK12824 PRK12824
3-oxoacyl-ACP reductase;
7-58 8.53e-08

3-oxoacyl-ACP reductase;


Pssm-ID: 183773 [Multi-domain]  Cd Length: 245  Bit Score: 46.30  E-value: 8.53e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2252308999   7 ENASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGL 58
Cdd:PRK12824  191 EQMGPEVLQSIVNQIPMKRLGTPEEIAAAVAFLVSEAAGFITGETISINGGL 242
PLN02253 PLN02253
xanthoxin dehydrogenase
31-60 8.81e-08

xanthoxin dehydrogenase


Pssm-ID: 177895 [Multi-domain]  Cd Length: 280  Bit Score: 46.35  E-value: 8.81e-08
                          10        20        30
                  ....*....|....*....|....*....|
gi 2252308999  31 DVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PLN02253  242 DVANAVLFLASDEARYISGLNLMIDGGFTC 271
PRK07856 PRK07856
SDR family oxidoreductase;
11-57 9.15e-08

SDR family oxidoreductase;


Pssm-ID: 236116 [Multi-domain]  Cd Length: 252  Bit Score: 46.08  E-value: 9.15e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2252308999  11 EELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK07856  192 AEGIAAVAATVPLGRLATPADIAWACLFLASDLASYVSGANLEVHGG 238
PRK06398 PRK06398
aldose dehydrogenase; Validated
22-60 1.11e-07

aldose dehydrogenase; Validated


Pssm-ID: 235794 [Multi-domain]  Cd Length: 258  Bit Score: 45.98  E-value: 1.11e-07
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2252308999  22 PIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK06398  208 PMKRVGKPEEVAYVVAFLASDLASFITGECVTVDGGLRA 246
PRK08226 PRK08226
SDR family oxidoreductase UcpA;
11-57 1.12e-07

SDR family oxidoreductase UcpA;


Pssm-ID: 181305 [Multi-domain]  Cd Length: 263  Bit Score: 45.95  E-value: 1.12e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2252308999  11 EELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK08226  206 ESVLTEMAKAIPLRRLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252
FabI COG0623
Enoyl-[acyl-carrier-protein] reductase FabI [Lipid transport and metabolism]; Enoyl- ...
11-60 1.32e-07

Enoyl-[acyl-carrier-protein] reductase FabI [Lipid transport and metabolism]; Enoyl-[acyl-carrier-protein] reductase FabI is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 440388 [Multi-domain]  Cd Length: 254  Bit Score: 45.78  E-value: 1.32e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2252308999  11 EELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:COG0623   202 DKLLDYAEERAPLGRNVTIEEVGNAAAFLLSDLASGITGEIIYVDGGYHI 251
THN_reductase-like_SDR_c cd05362
tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs; 1,3,6, ...
5-57 1.84e-07

tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs; 1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187620 [Multi-domain]  Cd Length: 243  Bit Score: 45.34  E-value: 1.84e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2252308999   5 FFENASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:cd05362   189 FYAGKTEEAVEGYAKMSPLGRLGEPEDIAPVVAFLASPDGRWVNGQVIRANGG 241
PRK07890 PRK07890
short chain dehydrogenase; Provisional
1-57 2.89e-07

short chain dehydrogenase; Provisional


Pssm-ID: 181159 [Multi-domain]  Cd Length: 258  Bit Score: 44.56  E-value: 2.89e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2252308999   1 MMQAFFENAS-------EELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK07890  191 PLKGYFRHQAgkygvtvEQIYAETAANSDLKRLPTDDEVASAVLFLASDLARAITGQTLDVNCG 254
PRK12429 PRK12429
3-hydroxybutyrate dehydrogenase; Provisional
7-61 5.30e-07

3-hydroxybutyrate dehydrogenase; Provisional


Pssm-ID: 237100 [Multi-domain]  Cd Length: 258  Bit Score: 44.11  E-value: 5.30e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2252308999   7 ENASEELLGKLEkqiPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSAQ 61
Cdd:PRK12429  207 EEVLEDVLLPLV---PQKRFTTVEEIADYALFLASFAAKGVTGQAWVVDGGWTAQ 258
PRK08643 PRK08643
(S)-acetoin forming diacetyl reductase;
19-58 6.53e-07

(S)-acetoin forming diacetyl reductase;


Pssm-ID: 181518 [Multi-domain]  Cd Length: 256  Bit Score: 43.95  E-value: 6.53e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2252308999  19 KQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGL 58
Cdd:PRK08643  214 KDITLGRLSEPEDVANCVSFLAGPDSDYITGQTIIVDGGM 253
meso-BDH-like_SDR_c cd05366
meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs; 2,3-butanediol dehydrogenases ...
2-58 7.22e-07

meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs; 2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187624 [Multi-domain]  Cd Length: 257  Bit Score: 43.52  E-value: 7.22e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2252308999   2 MQAFFENASEELLGKLE--------KQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGL 58
Cdd:cd05366   190 MWDYIDEEVGEIAGKPEgegfaefsSSIPLGRLSEPEDVAGLVSFLASEDSDYITGQTILVDGGM 254
PRK06484 PRK06484
short chain dehydrogenase; Validated
16-60 1.36e-06

short chain dehydrogenase; Validated


Pssm-ID: 168574 [Multi-domain]  Cd Length: 520  Bit Score: 42.91  E-value: 1.36e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2252308999  16 KLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK06484  465 SIRRRIPLGRLGDPEEVAEAIAFLASPAASYVNGATLTVDGGWTA 509
MDH-like_SDR_c cd05352
mannitol dehydrogenase (MDH)-like, classical (c) SDRs; NADP-mannitol dehydrogenase catalyzes ...
8-57 1.54e-06

mannitol dehydrogenase (MDH)-like, classical (c) SDRs; NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser).


Pssm-ID: 187610 [Multi-domain]  Cd Length: 252  Bit Score: 42.70  E-value: 1.54e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2252308999   8 NASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:cd05352   200 FVDKELRKKWESYIPLKRIALPEELVGAYLYLASDASSYTTGSDLIIDGG 249
PRK07063 PRK07063
SDR family oxidoreductase;
22-60 2.63e-06

SDR family oxidoreductase;


Pssm-ID: 235924 [Multi-domain]  Cd Length: 260  Bit Score: 41.96  E-value: 2.63e-06
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2252308999  22 PIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK07063  218 PMKRIGRPEEVAMTAVFLASDEAPFINATCITIDGGRSV 256
PRK06198 PRK06198
short chain dehydrogenase; Provisional
2-55 2.88e-06

short chain dehydrogenase; Provisional


Pssm-ID: 180462 [Multi-domain]  Cd Length: 260  Bit Score: 41.91  E-value: 2.88e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2252308999   2 MQAFFENASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTelVID 55
Cdd:PRK06198  198 IQREFHGAPDDWLEKAAATQPFGRLLDPDEVARAVAFLLSDESGLMTGS--VID 249
3alpha_HSD_SDR_c cd05328
alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs; Bacterial 3-alpha_HSD, ...
22-60 3.12e-06

alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs; Bacterial 3-alpha_HSD, which catalyzes the NAD-dependent oxidoreduction of hydroxysteroids, is a dimeric member of the classical SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187589 [Multi-domain]  Cd Length: 250  Bit Score: 41.71  E-value: 3.12e-06
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2252308999  22 PIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:cd05328   209 PMGRRAEPDEIAPVIAFLASDAASWINGANLFVDGGLDA 247
SDR_c12 cd08944
classical (c) SDR, subgroup 12; These are classical SDRs, with the canonical active site ...
31-57 3.40e-06

classical (c) SDR, subgroup 12; These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187648 [Multi-domain]  Cd Length: 246  Bit Score: 41.71  E-value: 3.40e-06
                          10        20
                  ....*....|....*....|....*..
gi 2252308999  31 DVANGILFLASDESKMITGTELVIDGG 57
Cdd:cd08944   220 DVAAAVVFLLSDDASFITGQVLCVDGG 246
A3DFK9-like_SDR_c cd09761
Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, ...
20-59 4.28e-06

Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs; This subgroup includes a putative carbohydrate or polyalcohol metabolizing SDR (A3DFK9) from Clostridium thermocellum. Its members have a TGXXXGXG classical-SDR glycine-rich NAD-binding motif, and some have a canonical SDR active site tetrad (A3DFK9 lacks the upstream Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187662 [Multi-domain]  Cd Length: 242  Bit Score: 41.41  E-value: 4.28e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2252308999  20 QIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:cd09761   198 QHPAGRVGTPKDIANLVLFLCQQDAGFITGETFIVDGGMT 237
PRK07577 PRK07577
SDR family oxidoreductase;
21-59 6.04e-06

SDR family oxidoreductase;


Pssm-ID: 181044 [Multi-domain]  Cd Length: 234  Bit Score: 40.87  E-value: 6.04e-06
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2252308999  21 IPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:PRK07577  195 IPMRRLGTPEEVAAAIAFLLSDDAGFITGQVLGVDGGGS 233
ENR_SDR cd05372
Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR; This bacterial subgroup of ...
18-61 6.49e-06

Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR; This bacterial subgroup of ENRs includes Escherichia coli ENR. ENR catalyzes the NAD(P)H-dependent reduction of enoyl-ACP in the last step of fatty acid biosynthesis. De novo fatty acid biosynthesis is catalyzed by the fatty acid synthetase complex, through the serial addition of 2-carbon subunits. In bacteria and plants,ENR catalyzes one of six synthetic steps in this process. Oilseed rape ENR, and also apparently the NADH-specific form of Escherichia coli ENR, is tetrameric. Although similar to the classical SDRs, this group does not have the canonical catalytic tetrad, nor does it have the typical Gly-rich NAD-binding pattern. Such so-called divergent SDRs have a GXXXXXSXA NAD-binding motif and a YXXMXXXK (or YXXXMXXXK) active site motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187630 [Multi-domain]  Cd Length: 250  Bit Score: 41.03  E-value: 6.49e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2252308999  18 EKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSAQ 61
Cdd:cd05372   206 EQRAPLGRNVTAEEVGNTAAFLLSDLSSGITGEIIYVDGGYHIM 249
PRK08416 PRK08416
enoyl-ACP reductase;
11-57 6.98e-06

enoyl-ACP reductase;


Pssm-ID: 181417 [Multi-domain]  Cd Length: 260  Bit Score: 40.91  E-value: 6.98e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2252308999  11 EELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK08416  210 EEVKAKTEELSPLNRMGQPEDLAGACLFLCSEKASWLTGQTIVVDGG 256
Ga5DH-like_SDR_c cd05347
gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs; Ga5DH catalyzes the NADP-dependent ...
9-60 8.95e-06

gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs; Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187605 [Multi-domain]  Cd Length: 248  Bit Score: 40.42  E-value: 8.95e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2252308999   9 ASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:cd05347   197 ADPEFNDDILKRIPAGRWGQPEDLVGAAVFLASDASDYVNGQIIFVDGGWLA 248
PRK12828 PRK12828
short chain dehydrogenase; Provisional
4-58 9.27e-06

short chain dehydrogenase; Provisional


Pssm-ID: 237220 [Multi-domain]  Cd Length: 239  Bit Score: 40.55  E-value: 9.27e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2252308999   4 AFFENASEELLGK----------------LEKQIPIRKFAESI---DVANGILFLASDESKMITGTELVIDGGL 58
Cdd:PRK12828  163 RLTEALAAELLDRgitvnavlpsiidtppNRADMPDADFSRWVtpeQIAAVIAFLLSDEAQAITGASIPVDGGV 236
PRK06172 PRK06172
SDR family oxidoreductase;
1-61 1.11e-05

SDR family oxidoreductase;


Pssm-ID: 180440 [Multi-domain]  Cd Length: 253  Bit Score: 40.50  E-value: 1.11e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2252308999   1 MMQAFFEnASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSAQ 61
Cdd:PRK06172  194 MFRRAYE-ADPRKAEFAAAMHPVGRIGKVEEVASAVLYLCSDGASFTTGHALMVDGGATAQ 253
fabG PRK06463
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
8-57 1.23e-05

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 180576 [Multi-domain]  Cd Length: 255  Bit Score: 40.15  E-value: 1.23e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2252308999   8 NASEELLGKLEK----QIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK06463  193 GKSQEEAEKLRElfrnKTVLKTTGKPEDIANIVLFLASDDARYITGQVIVADGG 246
PRK06125 PRK06125
short chain dehydrogenase; Provisional
7-60 1.24e-05

short chain dehydrogenase; Provisional


Pssm-ID: 235703 [Multi-domain]  Cd Length: 259  Bit Score: 40.03  E-value: 1.24e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2252308999   7 ENASEELLGKLekqiPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK06125  206 ESRWQELLAGL----PLGRPATPEEVADLVAFLASPRSGYTSGTVVTVDGGISA 255
PRK06484 PRK06484
short chain dehydrogenase; Validated
9-60 1.24e-05

short chain dehydrogenase; Validated


Pssm-ID: 168574 [Multi-domain]  Cd Length: 520  Bit Score: 40.22  E-value: 1.24e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2252308999   9 ASEELLGKLE-----KQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK06484  193 AELERAGKLDpsavrSRIPLGRLGRPEEIAEAVFFLASDQASYITGSTLVVDGGWTV 249
PRK06124 PRK06124
SDR family oxidoreductase;
9-61 1.34e-05

SDR family oxidoreductase;


Pssm-ID: 235702 [Multi-domain]  Cd Length: 256  Bit Score: 40.08  E-value: 1.34e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2252308999   9 ASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSAQ 61
Cdd:PRK06124  203 ADPAVGPWLAQRTPLGRWGRPEEIAGAAVFLASPAASYVNGHVLAVDGGYSVH 255
PRK12939 PRK12939
short chain dehydrogenase; Provisional
4-57 1.60e-05

short chain dehydrogenase; Provisional


Pssm-ID: 183833 [Multi-domain]  Cd Length: 250  Bit Score: 39.95  E-value: 1.60e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2252308999   4 AFFENASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK12939  193 ATAYVPADERHAYYLKGRALERLQVPDDVAGAVLFLLSDAARFVTGQLLPVNGG 246
PRK06935 PRK06935
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;
7-57 1.64e-05

2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD;


Pssm-ID: 180761 [Multi-domain]  Cd Length: 258  Bit Score: 39.72  E-value: 1.64e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2252308999   7 ENASEELLGKlekqIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK06935  208 KNRNDEILKR----IPAGRWGEPDDLMGAAVFLASRASDYVNGHILAVDGG 254
PRK07478 PRK07478
short chain dehydrogenase; Provisional
8-61 1.65e-05

short chain dehydrogenase; Provisional


Pssm-ID: 180993 [Multi-domain]  Cd Length: 254  Bit Score: 39.91  E-value: 1.65e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2252308999   8 NASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSAQ 61
Cdd:PRK07478  199 GDTPEALAFVAGLHALKRMAQPEEIAQAALFLASDAASFVTGTALLVDGGVSIT 252
TR_SDR_c cd05329
tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs; This subgroup ...
12-60 1.74e-05

tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs; This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187590 [Multi-domain]  Cd Length: 251  Bit Score: 39.74  E-value: 1.74e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2252308999  12 ELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:cd05329   202 ENLDKVIERTPLKRFGEPEEVAALVAFLCMPAASYITGQIIAVDGGLTA 250
fabG PRK06550
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
1-57 1.81e-05

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 180617 [Multi-domain]  Cd Length: 235  Bit Score: 39.56  E-value: 1.81e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2252308999   1 MMQAFFENAseELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK06550  177 MTAADFEPG--GLADWVARETPIKRWAEPEEVAELTLFLASGKADYMQGTIVPIDGG 231
PRK07831 PRK07831
SDR family oxidoreductase;
2-49 2.08e-05

SDR family oxidoreductase;


Pssm-ID: 236110 [Multi-domain]  Cd Length: 262  Bit Score: 39.63  E-value: 2.08e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2252308999   2 MQAFFEN-ASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITG 49
Cdd:PRK07831  204 MHPFLAKvTSAELLDELAAREAFGRAAEPWEVANVIAFLASDYSSYLTG 252
PRK12743 PRK12743
SDR family oxidoreductase;
21-60 2.55e-05

SDR family oxidoreductase;


Pssm-ID: 237187 [Multi-domain]  Cd Length: 256  Bit Score: 39.25  E-value: 2.55e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2252308999  21 IPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK12743  206 IPLGRPGDTHEIASLVAWLCSEGASYTTGQSLIVDGGFML 245
PRK08277 PRK08277
D-mannonate oxidoreductase; Provisional
20-60 2.73e-05

D-mannonate oxidoreductase; Provisional


Pssm-ID: 236216 [Multi-domain]  Cd Length: 278  Bit Score: 39.11  E-value: 2.73e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2252308999  20 QIPIRKFAESIDVANGILFLASDE-SKMITGTELVIDGGLSA 60
Cdd:PRK08277  233 HTPMGRFGKPEELLGTLLWLADEKaSSFVTGVVLPVDGGFSA 274
PRK07774 PRK07774
SDR family oxidoreductase;
11-57 2.76e-05

SDR family oxidoreductase;


Pssm-ID: 236094 [Multi-domain]  Cd Length: 250  Bit Score: 39.34  E-value: 2.76e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2252308999  11 EELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK07774  199 KEFVADMVKGIPLSRMGTPEDLVGMCLFLLSDEASWITGQIFNVDGG 245
PRK12428 PRK12428
coniferyl-alcohol dehydrogenase;
22-61 2.98e-05

coniferyl-alcohol dehydrogenase;


Pssm-ID: 237099 [Multi-domain]  Cd Length: 241  Bit Score: 39.21  E-value: 2.98e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2252308999  22 PIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSAQ 61
Cdd:PRK12428  194 RMGRPATADEQAAVLVFLCSDAARWINGVNLPVDGGLAAT 233
DHB_DH-like_SDR_c cd08937
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR; ...
21-57 3.79e-05

1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR; DHB DH (aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase) catalyzes the NAD-dependent conversion of 1,2-dihydroxycyclohexa-3,4-diene carboxylate to a catechol. This subgroup also contains Pseudomonas putida F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase, the second enzyme in the pathway for catabolism of p-cumate catabolism. This subgroup shares the glycine-rich NAD-binding motif of the classical SDRs and shares the same catalytic triad; however, the upstream Asn implicated in cofactor binding or catalysis in other SDRs is generally substituted by a Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187642 [Multi-domain]  Cd Length: 256  Bit Score: 38.66  E-value: 3.79e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2252308999  21 IPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:cd08937   217 SLMGRYGTIDEQVRAILFLASDEASYITGTVLPVGGG 253
benD PRK12823
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
33-57 3.92e-05

1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional


Pssm-ID: 183772 [Multi-domain]  Cd Length: 260  Bit Score: 38.77  E-value: 3.92e-05
                          10        20
                  ....*....|....*....|....*
gi 2252308999  33 ANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK12823  233 VAAILFLASDEASYITGTVLPVGGG 257
PRK08936 PRK08936
glucose-1-dehydrogenase; Provisional
9-59 4.10e-05

glucose-1-dehydrogenase; Provisional


Pssm-ID: 181585 [Multi-domain]  Cd Length: 261  Bit Score: 38.55  E-value: 4.10e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2252308999   9 ASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:PRK08936  201 ADPKQRADVESMIPMGYIGKPEEIAAVAAWLASSEASYVTGITLFADGGMT 251
PRK08265 PRK08265
short chain dehydrogenase; Provisional
31-60 4.40e-05

short chain dehydrogenase; Provisional


Pssm-ID: 236209 [Multi-domain]  Cd Length: 261  Bit Score: 38.45  E-value: 4.40e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 2252308999  31 DVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK08265  217 EVAQVVAFLCSDAASFVTGADYAVDGGYSA 246
PRK07533 PRK07533
enoyl-[acyl-carrier-protein] reductase FabI;
11-59 6.20e-05

enoyl-[acyl-carrier-protein] reductase FabI;


Pssm-ID: 181020 [Multi-domain]  Cd Length: 258  Bit Score: 38.38  E-value: 6.20e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2252308999  11 EELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:PRK07533  207 DALLEDAAERAPLRRLVDIDDVGAVAAFLASDAARRLTGNTLYIDGGYH 255
PRK09242 PRK09242
SDR family oxidoreductase;
11-60 6.86e-05

SDR family oxidoreductase;


Pssm-ID: 181721 [Multi-domain]  Cd Length: 257  Bit Score: 38.19  E-value: 6.86e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2252308999  11 EELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK09242  205 PDYYEQVIERTPMRRVGEPEEVAAAVAFLCMPAASYITGQCIAVDGGFLR 254
PRK12748 PRK12748
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
9-59 7.21e-05

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 237189 [Multi-domain]  Cd Length: 256  Bit Score: 38.13  E-value: 7.21e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2252308999   9 ASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:PRK12748  205 ITEELKHHLVPKFPQGRVGEPVDAARLIAFLVSEEAKWITGQVIHSEGGFS 255
pter_reduc_Leis TIGR02685
pteridine reductase; Pteridine reductase is an enzyme used by trypanosomatids (including ...
11-59 7.56e-05

pteridine reductase; Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.


Pssm-ID: 131732 [Multi-domain]  Cd Length: 267  Bit Score: 37.99  E-value: 7.56e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2252308999  11 EELLGKLEKQIPI-RKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:TIGR02685 214 FEVQEDYRRKVPLgQREASAEQIADVVIFLVSPKAKYITGTCIKVDGGLS 263
PRK06114 PRK06114
SDR family oxidoreductase;
18-57 7.99e-05

SDR family oxidoreductase;


Pssm-ID: 180408 [Multi-domain]  Cd Length: 254  Bit Score: 37.84  E-value: 7.99e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2252308999  18 EKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK06114  211 EEQTPMQRMAKVDEMVGPAVFLLSDAASFCTGVDLLVDGG 250
PRK12935 PRK12935
acetoacetyl-CoA reductase; Provisional
11-58 8.89e-05

acetoacetyl-CoA reductase; Provisional


Pssm-ID: 183832 [Multi-domain]  Cd Length: 247  Bit Score: 37.68  E-value: 8.89e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2252308999  11 EELLGKLEKQIPIRKFAESIDVANGILFLASDESkMITGTELVIDGGL 58
Cdd:PRK12935  199 EEVRQKIVAKIPKKRFGQADEIAKGVVYLCRDGA-YITGQQLNINGGL 245
PRK09186 PRK09186
flagellin modification protein A; Provisional
31-59 1.12e-04

flagellin modification protein A; Provisional


Pssm-ID: 236399 [Multi-domain]  Cd Length: 256  Bit Score: 37.66  E-value: 1.12e-04
                          10        20
                  ....*....|....*....|....*....
gi 2252308999  31 DVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:PRK09186  227 DICGTLVFLLSDQSKYITGQNIIVDDGFS 255
PRK12938 PRK12938
3-ketoacyl-ACP reductase;
11-58 1.20e-04

3-ketoacyl-ACP reductase;


Pssm-ID: 171822 [Multi-domain]  Cd Length: 246  Bit Score: 37.30  E-value: 1.20e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2252308999  11 EELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGL 58
Cdd:PRK12938  196 PDVLEKIVATIPVRRLGSPDEIGSIVAWLASEESGFSTGADFSLNGGL 243
PRK12742 PRK12742
SDR family oxidoreductase;
23-60 1.28e-04

SDR family oxidoreductase;


Pssm-ID: 183714 [Multi-domain]  Cd Length: 237  Bit Score: 37.43  E-value: 1.28e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2252308999  23 IRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK12742  200 IKRHGRPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA 237
PRK12937 PRK12937
short chain dehydrogenase; Provisional
5-58 1.34e-04

short chain dehydrogenase; Provisional


Pssm-ID: 171821 [Multi-domain]  Cd Length: 245  Bit Score: 37.41  E-value: 1.34e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2252308999   5 FFENASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGL 58
Cdd:PRK12937  191 FFNGKSAEQIDQLAGLAPLERLGTPEEIAAAVAFLAGPDGAWVNGQVLRVNGGF 244
PRK12859 PRK12859
3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
10-57 1.70e-04

3-ketoacyl-(acyl-carrier-protein) reductase; Provisional


Pssm-ID: 183797 [Multi-domain]  Cd Length: 256  Bit Score: 37.07  E-value: 1.70e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2252308999  10 SEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK12859  207 TEEIKQGLLPMFPFGRIGEPKDAARLIKFLASEEAEWITGQIIHSEGG 254
PRK08589 PRK08589
SDR family oxidoreductase;
22-60 1.74e-04

SDR family oxidoreductase;


Pssm-ID: 181491 [Multi-domain]  Cd Length: 272  Bit Score: 37.07  E-value: 1.74e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2252308999  22 PIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK08589  216 PLGRLGKPEEVAKLVVFLASDDSSFITGETIRIDGGVMA 254
PRK05867 PRK05867
SDR family oxidoreductase;
18-59 2.13e-04

SDR family oxidoreductase;


Pssm-ID: 135631 [Multi-domain]  Cd Length: 253  Bit Score: 36.94  E-value: 2.13e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2252308999  18 EKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:PRK05867  210 EPKIPLGRLGRPEELAGLYLYLASEASSYMTGSDIVIDGGYT 251
PRK05875 PRK05875
short chain dehydrogenase; Provisional
10-57 2.15e-04

short chain dehydrogenase; Provisional


Pssm-ID: 180300 [Multi-domain]  Cd Length: 276  Bit Score: 36.70  E-value: 2.15e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2252308999  10 SEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK05875  203 SPELSADYRACTPLPRVGEVEDVANLAMFLLSDAASWITGQVINVDGG 250
PRK12936 PRK12936
3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
5-59 2.19e-04

3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed


Pssm-ID: 171820 [Multi-domain]  Cd Length: 245  Bit Score: 36.82  E-value: 2.19e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252308999   5 FFENASEELLGKLEKQ-----IPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:PRK12936  184 FIESAMTGKLNDKQKEaimgaIPMKRMGTGAEVASAVAYLASSEAAYVTGQTIHVNGGMA 243
PRK12827 PRK12827
short chain dehydrogenase; Provisional
17-58 2.41e-04

short chain dehydrogenase; Provisional


Pssm-ID: 237219 [Multi-domain]  Cd Length: 249  Bit Score: 36.62  E-value: 2.41e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2252308999  17 LEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGL 58
Cdd:PRK12827  207 LLNPVPVQRLGEPDEVAALVAFLVSDAASYVTGQVIPVDGGF 248
PRK07984 PRK07984
enoyl-ACP reductase FabI;
12-59 2.51e-04

enoyl-ACP reductase FabI;


Pssm-ID: 181187 [Multi-domain]  Cd Length: 262  Bit Score: 36.42  E-value: 2.51e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2252308999  12 ELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:PRK07984  205 KMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFS 252
PRK12384 PRK12384
sorbitol-6-phosphate dehydrogenase; Provisional
19-57 3.78e-04

sorbitol-6-phosphate dehydrogenase; Provisional


Pssm-ID: 183489 [Multi-domain]  Cd Length: 259  Bit Score: 36.17  E-value: 3.78e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2252308999  19 KQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK12384  217 DKVPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGG 255
mannonate_red_SDR_c cd08935
putative D-mannonate oxidoreductase, classical (c) SDR; D-mannonate oxidoreductase catalyzes ...
15-60 4.44e-04

putative D-mannonate oxidoreductase, classical (c) SDR; D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187640 [Multi-domain]  Cd Length: 271  Bit Score: 35.90  E-value: 4.44e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2252308999  15 GKLEKQIPIRKFAESIDVANGILFLASDE-SKMITGTELVIDGGLSA 60
Cdd:cd08935   222 NKILGRTPMGRFGKPEELLGALLFLASEKaSSFVTGVVIPVDGGFSA 268
PRK07370 PRK07370
enoyl-[acyl-carrier-protein] reductase FabI;
12-59 4.67e-04

enoyl-[acyl-carrier-protein] reductase FabI;


Pssm-ID: 180949 [Multi-domain]  Cd Length: 258  Bit Score: 35.85  E-value: 4.67e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2252308999  12 ELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:PRK07370  207 DMIHHVEEKAPLRRTVTQTEVGNTAAFLLSDLASGITGQTIYVDAGYC 254
PLN02730 PLN02730
enoyl-[acyl-carrier-protein] reductase
22-60 4.67e-04

enoyl-[acyl-carrier-protein] reductase


Pssm-ID: 178331 [Multi-domain]  Cd Length: 303  Bit Score: 35.91  E-value: 4.67e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2252308999  22 PIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PLN02730  250 PLQKELTADEVGNAAAFLASPLASAITGATIYVDNGLNA 288
PRK07062 PRK07062
SDR family oxidoreductase;
19-59 5.22e-04

SDR family oxidoreductase;


Pssm-ID: 180818 [Multi-domain]  Cd Length: 265  Bit Score: 35.79  E-value: 5.22e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2252308999  19 KQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:PRK07062  222 KGIPLGRLGRPDEAARALFFLASPLSSYTTGSHIDVSGGFA 262
PRK07041 PRK07041
SDR family oxidoreductase;
7-57 5.39e-04

SDR family oxidoreductase;


Pssm-ID: 235914 [Multi-domain]  Cd Length: 230  Bit Score: 35.40  E-value: 5.39e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2252308999   7 ENASEELLGKLEKQIPIRKFAESIDVANGILFLAsdESKMITGTELVIDGG 57
Cdd:PRK07041  178 GDAREAMFAAAAERLPARRVGQPEDVANAILFLA--ANGFTTGSTVLVDGG 226
PRK06123 PRK06123
SDR family oxidoreductase;
16-57 6.15e-04

SDR family oxidoreductase;


Pssm-ID: 180411 [Multi-domain]  Cd Length: 248  Bit Score: 35.52  E-value: 6.15e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2252308999  16 KLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK06123  206 RVKAGIPMGRGGTAEEVARAILWLLSDEASYTTGTFIDVSGG 247
PRK06940 PRK06940
short chain dehydrogenase; Provisional
31-61 6.67e-04

short chain dehydrogenase; Provisional


Pssm-ID: 180766 [Multi-domain]  Cd Length: 275  Bit Score: 35.38  E-value: 6.67e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2252308999  31 DVANGILFLASDESKMITGTELVIDGGLSAQ 61
Cdd:PRK06940  236 EIAALAEFLMGPRGSFITGSDFLVDGGATAS 266
RhlG_SDR_c cd08942
RhlG and related beta-ketoacyl reductases, classical (c) SDRs; Pseudomonas aeruginosa RhlG is ...
2-57 1.00e-03

RhlG and related beta-ketoacyl reductases, classical (c) SDRs; Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187646 [Multi-domain]  Cd Length: 250  Bit Score: 34.76  E-value: 1.00e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2252308999   2 MQAFFENaSEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:cd08942   196 MTAFLLN-DPAALEAEEKSIPLGRWGRPEDMAGLAIMLASRAGAYLTGAVIPVDGG 250
PRK08628 PRK08628
SDR family oxidoreductase;
6-57 1.06e-03

SDR family oxidoreductase;


Pssm-ID: 181508 [Multi-domain]  Cd Length: 258  Bit Score: 34.55  E-value: 1.06e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2252308999   6 FENAsEELLGKLEKQIPI-RKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK08628  198 FDDP-EAKLAAITAKIPLgHRMTTAEEIADTAVFLLSERSSHTTGQWLFVDGG 249
BKR_1_SDR_c cd05337
putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) ...
20-59 1.11e-03

putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR; This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187596 [Multi-domain]  Cd Length: 255  Bit Score: 34.75  E-value: 1.11e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2252308999  20 QIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:cd05337   212 LVPIRRWGQPEDIAKAVRTLASGLLPYSTGQPINIDGGLS 251
cyclohexanol_reductase_SDR_c cd05330
cyclohexanol reductases, including levodione reductase, classical (c) SDRs; Cyloclohexanol ...
22-60 1.45e-03

cyclohexanol reductases, including levodione reductase, classical (c) SDRs; Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187591 [Multi-domain]  Cd Length: 257  Bit Score: 34.42  E-value: 1.45e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2252308999  22 PIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:cd05330   217 PMKRFGEPEEVAAVVAFLLSDDAGYVNAAVVPIDGGQSY 255
PRK08324 PRK08324
bifunctional aldolase/short-chain dehydrogenase;
31-60 1.62e-03

bifunctional aldolase/short-chain dehydrogenase;


Pssm-ID: 236241 [Multi-domain]  Cd Length: 681  Bit Score: 34.44  E-value: 1.62e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 2252308999  31 DVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK08324  648 DVAEAVVFLASGLLSKTTGAIITVDGGNAA 677
PRK07523 PRK07523
gluconate 5-dehydrogenase; Provisional
9-60 1.77e-03

gluconate 5-dehydrogenase; Provisional


Pssm-ID: 236040 [Multi-domain]  Cd Length: 255  Bit Score: 33.97  E-value: 1.77e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2252308999   9 ASEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLSA 60
Cdd:PRK07523  202 ADPEFSAWLEKRTPAGRWGKVEELVGACVFLASDASSFVNGHVLYVDGGITA 253
PRK06113 PRK06113
7-alpha-hydroxysteroid dehydrogenase; Validated
12-57 1.98e-03

7-alpha-hydroxysteroid dehydrogenase; Validated


Pssm-ID: 135765 [Multi-domain]  Cd Length: 255  Bit Score: 34.05  E-value: 1.98e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2252308999  12 ELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK06113  204 EIEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGG 249
CR_SDR_c cd08936
Porcine peroxisomal carbonyl reductase like, classical (c) SDR; This subgroup contains porcine ...
3-57 2.58e-03

Porcine peroxisomal carbonyl reductase like, classical (c) SDR; This subgroup contains porcine peroxisomal carbonyl reductase and similar proteins. The porcine enzyme efficiently reduces retinals. This subgroup also includes human dehydrogenase/reductase (SDR family) member 4 (DHRS4), and human DHRS4L1. DHRS4 is a peroxisomal enzyme with 3beta-hydroxysteroid dehydrogenase activity; it catalyzes the reduction of 3-keto-C19/C21-steroids into 3beta-hydroxysteroids more efficiently than it does the retinal reduction. The human DHRS4 gene cluster contains DHRS4, DHRS4L2 and DHRS4L1. DHRS4L2 and DHRS4L1 are paralogs of DHRS4, DHRS4L2 being the most recent member. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187641 [Multi-domain]  Cd Length: 256  Bit Score: 33.67  E-value: 2.58e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2252308999   3 QAFFENasEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:cd08936   199 SALWMD--KAVEESMKETLRIRRLGQPEDCAGIVSFLCSEDASYITGETVVVGGG 251
BphB-like_SDR_c cd05348
cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs; cis-biphenyl-2, ...
7-59 2.67e-03

cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs; cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB) is a classical SDR, it is of particular importance for its role in the degradation of biphenyl/polychlorinated biphenyls(PCBs); PCBs are a significant source of environmental contamination. This subgroup also includes Pseudomonas putida F1 cis-biphenyl-1,2-dihydrodiol-1,2-dehydrogenase (aka cis-benzene glycol dehydrogenase, encoded by the bnzE gene), which participates in benzene metabolism. In addition it includes Pseudomonas sp. C18 putative 1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase (aka dibenzothiophene dihydrodiol dehydrogenase, encoded by the doxE gene) which participates in an upper naphthalene catabolic pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187606 [Multi-domain]  Cd Length: 257  Bit Score: 33.48  E-value: 2.67e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2252308999   7 ENASEELLGKLEKQI-PIRKFAESIDVANGILFLAS-DESKMITGTELVIDGGLS 59
Cdd:cd05348   201 TSISTPPLDDMLKSIlPLGFAPEPEDYTGAYVFLASrGDNRPATGTVINYDGGMG 255
SDH_SDR_c_like cd05322
Sorbitol 6-phosphate dehydrogenase (SDH), classical (c) SDRs; Sorbitol 6-phosphate ...
20-57 3.29e-03

Sorbitol 6-phosphate dehydrogenase (SDH), classical (c) SDRs; Sorbitol 6-phosphate dehydrogenase (SDH, aka glucitol 6-phosphate dehydrogenase) catalyzes the NAD-dependent interconversion of D-fructose 6-phosphate to D-sorbitol 6-phosphate. SDH is a member of the classical SDRs, with the characteristic catalytic tetrad, but without a complete match to the typical NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.


Pssm-ID: 187583 [Multi-domain]  Cd Length: 257  Bit Score: 33.21  E-value: 3.29e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2252308999  20 QIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:cd05322   217 KVPLKRGCDYQDVLNMLLFYASPKASYCTGQSINITGG 254
7_alpha_HSDH_SDR_c cd05365
7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs; This bacterial ...
16-57 3.46e-03

7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs; This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.


Pssm-ID: 187623 [Multi-domain]  Cd Length: 242  Bit Score: 33.31  E-value: 3.46e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2252308999  16 KLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:cd05365   198 AMLKHTPLGRLGEPEDIANAALFLCSPASAWVSGQVLTVSGG 239
PRK09135 PRK09135
pteridine reductase; Provisional
16-60 4.29e-03

pteridine reductase; Provisional


Pssm-ID: 181668 [Multi-domain]  Cd Length: 249  Bit Score: 32.98  E-value: 4.29e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2252308999  16 KLEKQIPIRKFAESIDVANGILFLASDESkMITGTELVIDGGLSA 60
Cdd:PRK09135  204 AILARTPLKRIGTPEDIAEAVRFLLADAS-FITGQILAVDGGRSL 247
PRK05717 PRK05717
SDR family oxidoreductase;
31-59 6.17e-03

SDR family oxidoreductase;


Pssm-ID: 168204 [Multi-domain]  Cd Length: 255  Bit Score: 32.55  E-value: 6.17e-03
                          10        20
                  ....*....|....*....|....*....
gi 2252308999  31 DVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:PRK05717  220 DVAAMVAWLLSRQAGFVTGQEFVVDGGMT 248
PRK06200 PRK06200
2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
22-59 6.72e-03

2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional


Pssm-ID: 235739 [Multi-domain]  Cd Length: 263  Bit Score: 32.62  E-value: 6.72e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2252308999  22 PIRKFAESIDVANGILFLASDE-SKMITGTELVIDGGLS 59
Cdd:PRK06200  220 PLQFAPQPEDHTGPYVLLASRRnSRALTGVVINADGGLG 258
PRK08690 PRK08690
enoyl-[acyl-carrier-protein] reductase FabI;
12-59 8.51e-03

enoyl-[acyl-carrier-protein] reductase FabI;


Pssm-ID: 169553 [Multi-domain]  Cd Length: 261  Bit Score: 32.25  E-value: 8.51e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2252308999  12 ELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGGLS 59
Cdd:PRK08690  206 KLLGHVAAHNPLRRNVTIEEVGNTAAFLLSDLSSGITGEITYVDGGYS 253
PRK07677 PRK07677
short chain dehydrogenase; Provisional
10-57 9.13e-03

short chain dehydrogenase; Provisional


Pssm-ID: 181077 [Multi-domain]  Cd Length: 252  Bit Score: 31.96  E-value: 9.13e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2252308999  10 SEELLGKLEKQIPIRKFAESIDVANGILFLASDESKMITGTELVIDGG 57
Cdd:PRK07677  197 SEEAAKRTIQSVPLGRLGTPEEIAGLAYFLLSDEAAYINGTCITMDGG 244
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH