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Conserved domains on  [gi|2252309009|gb|URQ63032|]
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hypothetical protein M9B40_04740 [SAR86 cluster bacterium]

Protein Classification

NTP/NDP exchange transporter; ATP translocase( domain architecture ID 1904962)

NTP/NDP exchange transporter is a nucleotide transporter that may catalyze ATP/ADP exchange, or GTP, CTP, ATP, and UTP uptake through a proton symport mechanism; belongs to the Major Facilitator Superfamily (MFS)| ATP translocase catalyzes the highly specific transport of ATP across a membrane in an exchange mode with ADP; also contains a dystroglycan-type cadherin-like domain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TlcC super family cl43811
ATP/ADP translocase [Energy production and conversion];
27-430 2.34e-37

ATP/ADP translocase [Energy production and conversion];


The actual alignment was detected with superfamily member COG3202:

Pssm-ID: 442435  Cd Length: 430  Bit Score: 141.16  E-value: 2.34e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252309009  27 RPFRNTIAAD-IGTGDLTFYLLIVVVVMLLVNPIYSLIVSRVRLSKLVPSIYGFFILCLCGFYFTYSYLPDIFAVKTI-- 103
Cdd:COG3202    40 RPIRDALFLTgLGAEVLPWLKTGTAPVALLAVPLYSKLVNRLSRRRLFYVVYLFFLLFLLLFAFLLYPNRDAIIRKWVgr 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252309009 104 -FYVWYNIFNFFVVAIFWAMTVNSFDIEDGKKFFGIISGFGSLGASCGGALVDGFLYDKENLSL-LIAVSSLLLSIFFSS 181
Cdd:COG3202   120 lFYVWVELFNLFVVSLFWSFANDIFNTREAKRLFGLIGAGGTLGGILGGFLTSLLAKFLGLANLlLVAAVLLLIALLLLR 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252309009 182 HVQRKEITLNTSGDNMLVAGLIPSSALEQFSQIRTNPLIRQFVLYAFVWTCLSTALWFFQLEIINNYtmelaqdqkaiqg 261
Cdd:COG3202   200 YLNRRVPRLPDAAAKATKKKKIKGGLLEGLKLILKSPYLLLIALLVLLYNIVITLVEFQWKDIVKEA------------- 266

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252309009 262 LEDEEKLANFlsaektriFGRADSIVPLITLFVQIFLAASILKSkmLGIKFVLTVYGLIFSLAFLAvsgyfsdyLLASSA 341
Cdd:COG3202   267 YPDPAELAAF--------FGFFDLIVNLLTLLLQLFVTSRLLRR--LGVGVALLITPVIILVGGLL--------FFLFPA 328

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252309009 342 VLIFLILQGVMRPFEYGLNKPAREAVYTTLNSKEKYKSTVFIDTFTNRFGDASGGLLFNMLFS-LGLVAYVAPLAIIPLA 420
Cdd:COG3202   329 LAVGAIQNVLSRALKYSLFDPTREMLYIPLDRELKYKGKAFIDTVVYRLGKSLGGWILIGLLSlLGLSAPYLAVIFIVLA 408

                         410
                  ....*....|
gi 2252309009 421 IYLMYLGLGI 430
Cdd:COG3202   409 LLWILAAFKL 418
 
Name Accession Description Interval E-value
TlcC COG3202
ATP/ADP translocase [Energy production and conversion];
27-430 2.34e-37

ATP/ADP translocase [Energy production and conversion];


Pssm-ID: 442435  Cd Length: 430  Bit Score: 141.16  E-value: 2.34e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252309009  27 RPFRNTIAAD-IGTGDLTFYLLIVVVVMLLVNPIYSLIVSRVRLSKLVPSIYGFFILCLCGFYFTYSYLPDIFAVKTI-- 103
Cdd:COG3202    40 RPIRDALFLTgLGAEVLPWLKTGTAPVALLAVPLYSKLVNRLSRRRLFYVVYLFFLLFLLLFAFLLYPNRDAIIRKWVgr 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252309009 104 -FYVWYNIFNFFVVAIFWAMTVNSFDIEDGKKFFGIISGFGSLGASCGGALVDGFLYDKENLSL-LIAVSSLLLSIFFSS 181
Cdd:COG3202   120 lFYVWVELFNLFVVSLFWSFANDIFNTREAKRLFGLIGAGGTLGGILGGFLTSLLAKFLGLANLlLVAAVLLLIALLLLR 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252309009 182 HVQRKEITLNTSGDNMLVAGLIPSSALEQFSQIRTNPLIRQFVLYAFVWTCLSTALWFFQLEIINNYtmelaqdqkaiqg 261
Cdd:COG3202   200 YLNRRVPRLPDAAAKATKKKKIKGGLLEGLKLILKSPYLLLIALLVLLYNIVITLVEFQWKDIVKEA------------- 266

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252309009 262 LEDEEKLANFlsaektriFGRADSIVPLITLFVQIFLAASILKSkmLGIKFVLTVYGLIFSLAFLAvsgyfsdyLLASSA 341
Cdd:COG3202   267 YPDPAELAAF--------FGFFDLIVNLLTLLLQLFVTSRLLRR--LGVGVALLITPVIILVGGLL--------FFLFPA 328

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252309009 342 VLIFLILQGVMRPFEYGLNKPAREAVYTTLNSKEKYKSTVFIDTFTNRFGDASGGLLFNMLFS-LGLVAYVAPLAIIPLA 420
Cdd:COG3202   329 LAVGAIQNVLSRALKYSLFDPTREMLYIPLDRELKYKGKAFIDTVVYRLGKSLGGWILIGLLSlLGLSAPYLAVIFIVLA 408

                         410
                  ....*....|
gi 2252309009 421 IYLMYLGLGI 430
Cdd:COG3202   409 LLWILAAFKL 418
23 PHA02541
major capsid protein; Provisional
 248-275 4.84e-04

major capsid protein; Provisional


Pssm-ID: 177376  Cd Length: 518  Bit Score: 42.49  E-value: 4.84e-04
                          10        20
                  ....*....|....*....|....*...
gi 2252309009 248 YTMELAQDQKAIQGLEDEEKLANFLSAE 275
Cdd:PHA02541  268 YSIELAQDLRAVHGMDADAELSGILATE 295
 
Name Accession Description Interval E-value
TlcC COG3202
ATP/ADP translocase [Energy production and conversion];
27-430 2.34e-37

ATP/ADP translocase [Energy production and conversion];


Pssm-ID: 442435  Cd Length: 430  Bit Score: 141.16  E-value: 2.34e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252309009  27 RPFRNTIAAD-IGTGDLTFYLLIVVVVMLLVNPIYSLIVSRVRLSKLVPSIYGFFILCLCGFYFTYSYLPDIFAVKTI-- 103
Cdd:COG3202    40 RPIRDALFLTgLGAEVLPWLKTGTAPVALLAVPLYSKLVNRLSRRRLFYVVYLFFLLFLLLFAFLLYPNRDAIIRKWVgr 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252309009 104 -FYVWYNIFNFFVVAIFWAMTVNSFDIEDGKKFFGIISGFGSLGASCGGALVDGFLYDKENLSL-LIAVSSLLLSIFFSS 181
Cdd:COG3202   120 lFYVWVELFNLFVVSLFWSFANDIFNTREAKRLFGLIGAGGTLGGILGGFLTSLLAKFLGLANLlLVAAVLLLIALLLLR 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252309009 182 HVQRKEITLNTSGDNMLVAGLIPSSALEQFSQIRTNPLIRQFVLYAFVWTCLSTALWFFQLEIINNYtmelaqdqkaiqg 261
Cdd:COG3202   200 YLNRRVPRLPDAAAKATKKKKIKGGLLEGLKLILKSPYLLLIALLVLLYNIVITLVEFQWKDIVKEA------------- 266

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252309009 262 LEDEEKLANFlsaektriFGRADSIVPLITLFVQIFLAASILKSkmLGIKFVLTVYGLIFSLAFLAvsgyfsdyLLASSA 341
Cdd:COG3202   267 YPDPAELAAF--------FGFFDLIVNLLTLLLQLFVTSRLLRR--LGVGVALLITPVIILVGGLL--------FFLFPA 328

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2252309009 342 VLIFLILQGVMRPFEYGLNKPAREAVYTTLNSKEKYKSTVFIDTFTNRFGDASGGLLFNMLFS-LGLVAYVAPLAIIPLA 420
Cdd:COG3202   329 LAVGAIQNVLSRALKYSLFDPTREMLYIPLDRELKYKGKAFIDTVVYRLGKSLGGWILIGLLSlLGLSAPYLAVIFIVLA 408

                         410
                  ....*....|
gi 2252309009 421 IYLMYLGLGI 430
Cdd:COG3202   409 LLWILAAFKL 418
23 PHA02541
major capsid protein; Provisional
 248-275 4.84e-04

major capsid protein; Provisional


Pssm-ID: 177376  Cd Length: 518  Bit Score: 42.49  E-value: 4.84e-04
                          10        20
                  ....*....|....*....|....*...
gi 2252309009 248 YTMELAQDQKAIQGLEDEEKLANFLSAE 275
Cdd:PHA02541  268 YSIELAQDLRAVHGMDADAELSGILATE 295
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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