|
Name |
Accession |
Description |
Interval |
E-value |
| PBP4_Staph |
NF038258 |
penicillin-binding protein PBP4; Members of this family penicillin-binding protein 4 (PBP4), ... |
8-373 |
0e+00 |
|
penicillin-binding protein PBP4; Members of this family penicillin-binding protein 4 (PBP4), as the name is used in Staphylococcus aureus and related species from the same genus. PBP4 is not essential. It has transpeptidase activity, provides low level beta-lactam resistance, and in mutant strains can contribute to high level beta-lactam resistance.
Pssm-ID: 468436 [Multi-domain] Cd Length: 365 Bit Score: 600.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 8 IVVVFFASTIITPFARAYTPTPVELAQQSGYP-VTWAYQPEGMINISQTGQILYEFQSEQQWYPASMTKLMTMYLTLQAV 86
Cdd:NF038258 1 IVSLLLLSTIITPPASAAAETPVEIANQEGYQnLSEQYNPEGAIVTTQTGQILYDYHGNKKWDPASMTKLMTMYLTLEAI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 87 KEKKLSLNDTVQITDQHYRMSTLPELSNTKLYPGETYTVAELLQITVSASSNAAALILANQVSDSTSDFVDKMNDTAKSL 166
Cdd:NF038258 81 KKGKLSLNDKVKITSDYEKMSTLPNLSTFPLKPGQTYTIKELLKQTALASSNAAALILAEKVSGNTSKFTDRMNEKAKAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 167 GMTHTHYVNPTGAENRLLLEFAPKKYQHESSSTSSARDYAILAQHVVKDTPKILYFTKQIAPTQHGVTYYTFNDLLEGGN 246
Cdd:NF038258 161 GMKHTHFTNPSGADNNLLKPYAPKKYKDETKSKSTAKDMAILSQHLIKKHPKILKYTKLTADTQHGVTLYTTNLSLPGQP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 247 MSLPGTDGLKTGSSDIAdYNNSLTTKRGKFRIFHIIMGAGDYKHLGGEKQRNMMSASAINYTFSQYDYKKIVSKGKHKID 326
Cdd:NF038258 241 MSLKGTDGLKTGTSDEG-YNLALTTKRDGLRINQVIMNVGPYPSEGAKHARNKIANALMERAFKQYEYKKVLSKGEHKID 319
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 2254949670 327 GKSYYVTEDLYDVVPKDMSKPYHLVVKDSQVHLDYPRKFITKnDGPP 373
Cdd:NF038258 320 GKTYYVKKDLYDVVPKDKSKYDLKINKDGKVYVDYPRQFIKG-SHPP 365
|
|
| DacC |
COG1686 |
D-alanyl-D-alanine carboxypeptidase [Cell wall/membrane/envelope biogenesis]; |
1-309 |
7.47e-68 |
|
D-alanyl-D-alanine carboxypeptidase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441292 [Multi-domain] Cd Length: 324 Bit Score: 218.55 E-value: 7.47e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 1 MKKIILSIVVVFFASTIITPfaraytPTPVELAQQSGYpvtwayqpegMINiSQTGQILYEFQSEQQWYPASMTKLMTMY 80
Cdd:COG1686 1 MKKLLLLALLLLLAAAAAAP------AAPPDIAAKSAI----------LID-ADTGQVLYEKNADERLPPASLTKLMTAY 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 81 LTLQAVKEKKLSLNDTVQITDQHYRMstlpELSNTKLYPGETYTVAELLQITVSASSNAAALILANQVSDSTSDFVDKMN 160
Cdd:COG1686 64 VVLEALKAGKISLDDKVTVSEEAART----GGSKMGLKPGEQVTVEDLLKGLLLQSGNDAAVALAEHIAGSEEAFVALMN 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 161 DTAKSLGMTHTHYVNPTGAenrlllefapkkyqHESSSTSSARDYAILAQHVVKDTPKILYFTKQ---IAPTQHGVTYYT 237
Cdd:COG1686 140 AKAKELGMTNTHFVNPTGL--------------PDPGHYSTARDLALLARAAIKDYPEFYEIFSTkefTFPNGRGITLRN 205
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2254949670 238 FNDLLeggnMSLPGTDGLKTGSSDIADYNNSLTTKRGKFRIFHIIMGAgdykhlGGEKQRNMMSASAINYTF 309
Cdd:COG1686 206 TNRLL----GRYPGVDGLKTGYTDAAGYCLVASAKRGGRRLIAVVLGA------PSEKARFADAAKLLDYGF 267
|
|
| strep_PBP3 |
NF038273 |
streptococcal D-alanyl-D-alanine carboxypeptidase PBP3; PBP3 (penicillin-binding protein 3) is ... |
2-370 |
1.78e-53 |
|
streptococcal D-alanyl-D-alanine carboxypeptidase PBP3; PBP3 (penicillin-binding protein 3) is the lone D-alanyl-D-alanine carboxypeptidase in Streptococcus pneumoniae. The gene is known as pbp3 or dacA.
Pssm-ID: 468443 [Multi-domain] Cd Length: 407 Bit Score: 183.53 E-value: 1.78e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 2 KKIILSIVVVFFASTIITPFARAYtptpvELAQQSGYPVTwayqpegminiSQTGQILYEFQSEQQWYPASMTKLMTMYL 81
Cdd:NF038273 1 KKLILLLLLLLAFFLATTVSADDF-----DVAAKHAIAVE-----------ANTGKILYEKDATTPVPIASLTKLLTAYL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 82 TLQAVKEKKLSLNDTVQITDQHYRMSTLPELSNTKLYPGEtYTVAELLQITVSASSNAAALILANQVSDSTSDFVDKMND 161
Cdd:NF038273 65 VYKEIKSGKLSWDTPVKISDYPYELTTNYEISNVPLDARK-YTVKELLEASLVASANSAAIALAEKIAGSEPKFVDKMKA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 162 TAKSLGMTHTHYVNPTGAENRLLLE-FAPKkyqheSSSTS----SARDYAILAQHVVKDTPKILYFTKQIAPTQHGVTYY 236
Cdd:NF038273 144 QLKEWGITDAKLVNASGLNNSYLGDhIYPG-----SKKDDenklSAKDVAIIARHLIKDFPEVLKITSKTSADFAGTTIY 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 237 TFNDLLEGGNMSLPGTDGLKTGSSDIADYNNSLTTKRGKFRIFHIIMGAGDYKHlgGEKQRNMMSASAINYTFSQYDYKK 316
Cdd:NF038273 219 SYNYMLKGMPYYREGVDGLKTGTTEKAGASFVATSVENGMRVITVVLNADNADE--DEYARFTATNQLLDYIYQNFEKVT 296
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2254949670 317 IVSKGKHK-------IDGKSYYVT----EDLYDVVPKDMSKPYHLVVKDSQVHLDYPrkfITKND 370
Cdd:NF038273 297 LVKKGQAYkdsklpvIDGKKKTVSavakKDLTVIQKIGTDSKPSVKFTPKKKELTAP---IKKGQ 358
|
|
| Peptidase_S11 |
pfam00768 |
D-alanyl-D-alanine carboxypeptidase; |
54-285 |
5.34e-46 |
|
D-alanyl-D-alanine carboxypeptidase;
Pssm-ID: 425859 [Multi-domain] Cd Length: 234 Bit Score: 158.70 E-value: 5.34e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 54 QTGQILYEFQSEQQWYPASMTKLMTMYLTLQAVKEKKLSLNDTVQITDQHYRMSTlPELSNTKLYPGETYTVAELLQITV 133
Cdd:pfam00768 17 NTGKVLYEKNPDQVRPIASITKLMTAYVVLEALKAGKIKEDDMVTISEDAWATGN-PGSSNIFLKPGSQVSVKDLLRGAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 134 SASSNAAALILANQVSDSTSDFVDKMNDTAKSLGMTHTHYVNPTGAENrlllefaPKKYqhessstSSARDYAILAQHVV 213
Cdd:pfam00768 96 VSSGNDAAVALAEHIAGSEKAFVK*MNAKAKELGLKNTRFVNPTGLDA-------HGQY-------SSARDMAILAKALI 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2254949670 214 KDTPKILYFTKQiaPTQHGVTYYTFNDLLEGG--NMSLPGTDGLKTGSSDIADYNNSLTTKRGKFRIFHIIMGA 285
Cdd:pfam00768 162 KDLPEELSITKE--KSFTFRGINKINQRNRNGllWDKTWNVDGLKTGYTNEAGYCLVASATKGGMRLISVVMGA 233
|
|
| dacD |
PRK11397 |
serine-type D-Ala-D-Ala carboxypeptidase DacD; |
1-322 |
3.39e-27 |
|
serine-type D-Ala-D-Ala carboxypeptidase DacD;
Pssm-ID: 183117 [Multi-domain] Cd Length: 388 Bit Score: 111.84 E-value: 3.39e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 1 MKKIILsIVVVFFASTIITPFARA---YTPTPVELaqQSGYPVTWAYQpegminisqTGQILYEFQSEQQWYPASMTKLM 77
Cdd:PRK11397 1 LKRRLI-IAASLFAFNLSSAFAAEnipFSPQPPAI--DAGSWVLMDYT---------TGQILTAGNEHQQRNPASLTKLM 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 78 TMYLTLQAVKEKKLSLNDTVQITDQHYRMSTlPELSNTKLY---PGETYTVAELLQITVSASSNAAALILANQVSDSTSD 154
Cdd:PRK11397 69 TGYVVDRAIDSHRITPDDIVTVGRDAWAKDN-PVFVGSSLMflkEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 155 FVDKMNDTAKSLGMTHTHYVNPTGAEnrlllefAPKkyQHessstSSARDYAILAQHVVKDTPKILYFTKQIAPTQHGVT 234
Cdd:PRK11397 148 FVEMMNNYVEKLHLKDTHFETVHGLD-------APG--QH-----SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGIT 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 235 YYTFNDLLEGGNMSLpgtDGLKTGSSDIADYNNSLTTKRGKFRIFHIIMGAGDYKhlGGEKQ-RNMMSASAINYTFSQyd 313
Cdd:PRK11397 214 QQNRNGLLWDKTMNV---DGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAK--GREEQaRKLLRWGQQNFTTVQ-- 286
|
....*....
gi 2254949670 314 ykkIVSKGK 322
Cdd:PRK11397 287 ---ILHRGK 292
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PBP4_Staph |
NF038258 |
penicillin-binding protein PBP4; Members of this family penicillin-binding protein 4 (PBP4), ... |
8-373 |
0e+00 |
|
penicillin-binding protein PBP4; Members of this family penicillin-binding protein 4 (PBP4), as the name is used in Staphylococcus aureus and related species from the same genus. PBP4 is not essential. It has transpeptidase activity, provides low level beta-lactam resistance, and in mutant strains can contribute to high level beta-lactam resistance.
Pssm-ID: 468436 [Multi-domain] Cd Length: 365 Bit Score: 600.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 8 IVVVFFASTIITPFARAYTPTPVELAQQSGYP-VTWAYQPEGMINISQTGQILYEFQSEQQWYPASMTKLMTMYLTLQAV 86
Cdd:NF038258 1 IVSLLLLSTIITPPASAAAETPVEIANQEGYQnLSEQYNPEGAIVTTQTGQILYDYHGNKKWDPASMTKLMTMYLTLEAI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 87 KEKKLSLNDTVQITDQHYRMSTLPELSNTKLYPGETYTVAELLQITVSASSNAAALILANQVSDSTSDFVDKMNDTAKSL 166
Cdd:NF038258 81 KKGKLSLNDKVKITSDYEKMSTLPNLSTFPLKPGQTYTIKELLKQTALASSNAAALILAEKVSGNTSKFTDRMNEKAKAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 167 GMTHTHYVNPTGAENRLLLEFAPKKYQHESSSTSSARDYAILAQHVVKDTPKILYFTKQIAPTQHGVTYYTFNDLLEGGN 246
Cdd:NF038258 161 GMKHTHFTNPSGADNNLLKPYAPKKYKDETKSKSTAKDMAILSQHLIKKHPKILKYTKLTADTQHGVTLYTTNLSLPGQP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 247 MSLPGTDGLKTGSSDIAdYNNSLTTKRGKFRIFHIIMGAGDYKHLGGEKQRNMMSASAINYTFSQYDYKKIVSKGKHKID 326
Cdd:NF038258 241 MSLKGTDGLKTGTSDEG-YNLALTTKRDGLRINQVIMNVGPYPSEGAKHARNKIANALMERAFKQYEYKKVLSKGEHKID 319
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 2254949670 327 GKSYYVTEDLYDVVPKDMSKPYHLVVKDSQVHLDYPRKFITKnDGPP 373
Cdd:NF038258 320 GKTYYVKKDLYDVVPKDKSKYDLKINKDGKVYVDYPRQFIKG-SHPP 365
|
|
| DacC |
COG1686 |
D-alanyl-D-alanine carboxypeptidase [Cell wall/membrane/envelope biogenesis]; |
1-309 |
7.47e-68 |
|
D-alanyl-D-alanine carboxypeptidase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441292 [Multi-domain] Cd Length: 324 Bit Score: 218.55 E-value: 7.47e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 1 MKKIILSIVVVFFASTIITPfaraytPTPVELAQQSGYpvtwayqpegMINiSQTGQILYEFQSEQQWYPASMTKLMTMY 80
Cdd:COG1686 1 MKKLLLLALLLLLAAAAAAP------AAPPDIAAKSAI----------LID-ADTGQVLYEKNADERLPPASLTKLMTAY 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 81 LTLQAVKEKKLSLNDTVQITDQHYRMstlpELSNTKLYPGETYTVAELLQITVSASSNAAALILANQVSDSTSDFVDKMN 160
Cdd:COG1686 64 VVLEALKAGKISLDDKVTVSEEAART----GGSKMGLKPGEQVTVEDLLKGLLLQSGNDAAVALAEHIAGSEEAFVALMN 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 161 DTAKSLGMTHTHYVNPTGAenrlllefapkkyqHESSSTSSARDYAILAQHVVKDTPKILYFTKQ---IAPTQHGVTYYT 237
Cdd:COG1686 140 AKAKELGMTNTHFVNPTGL--------------PDPGHYSTARDLALLARAAIKDYPEFYEIFSTkefTFPNGRGITLRN 205
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2254949670 238 FNDLLeggnMSLPGTDGLKTGSSDIADYNNSLTTKRGKFRIFHIIMGAgdykhlGGEKQRNMMSASAINYTF 309
Cdd:COG1686 206 TNRLL----GRYPGVDGLKTGYTDAAGYCLVASAKRGGRRLIAVVLGA------PSEKARFADAAKLLDYGF 267
|
|
| strep_PBP3 |
NF038273 |
streptococcal D-alanyl-D-alanine carboxypeptidase PBP3; PBP3 (penicillin-binding protein 3) is ... |
2-370 |
1.78e-53 |
|
streptococcal D-alanyl-D-alanine carboxypeptidase PBP3; PBP3 (penicillin-binding protein 3) is the lone D-alanyl-D-alanine carboxypeptidase in Streptococcus pneumoniae. The gene is known as pbp3 or dacA.
Pssm-ID: 468443 [Multi-domain] Cd Length: 407 Bit Score: 183.53 E-value: 1.78e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 2 KKIILSIVVVFFASTIITPFARAYtptpvELAQQSGYPVTwayqpegminiSQTGQILYEFQSEQQWYPASMTKLMTMYL 81
Cdd:NF038273 1 KKLILLLLLLLAFFLATTVSADDF-----DVAAKHAIAVE-----------ANTGKILYEKDATTPVPIASLTKLLTAYL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 82 TLQAVKEKKLSLNDTVQITDQHYRMSTLPELSNTKLYPGEtYTVAELLQITVSASSNAAALILANQVSDSTSDFVDKMND 161
Cdd:NF038273 65 VYKEIKSGKLSWDTPVKISDYPYELTTNYEISNVPLDARK-YTVKELLEASLVASANSAAIALAEKIAGSEPKFVDKMKA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 162 TAKSLGMTHTHYVNPTGAENRLLLE-FAPKkyqheSSSTS----SARDYAILAQHVVKDTPKILYFTKQIAPTQHGVTYY 236
Cdd:NF038273 144 QLKEWGITDAKLVNASGLNNSYLGDhIYPG-----SKKDDenklSAKDVAIIARHLIKDFPEVLKITSKTSADFAGTTIY 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 237 TFNDLLEGGNMSLPGTDGLKTGSSDIADYNNSLTTKRGKFRIFHIIMGAGDYKHlgGEKQRNMMSASAINYTFSQYDYKK 316
Cdd:NF038273 219 SYNYMLKGMPYYREGVDGLKTGTTEKAGASFVATSVENGMRVITVVLNADNADE--DEYARFTATNQLLDYIYQNFEKVT 296
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2254949670 317 IVSKGKHK-------IDGKSYYVT----EDLYDVVPKDMSKPYHLVVKDSQVHLDYPrkfITKND 370
Cdd:NF038273 297 LVKKGQAYkdsklpvIDGKKKTVSavakKDLTVIQKIGTDSKPSVKFTPKKKELTAP---IKKGQ 358
|
|
| Peptidase_S11 |
pfam00768 |
D-alanyl-D-alanine carboxypeptidase; |
54-285 |
5.34e-46 |
|
D-alanyl-D-alanine carboxypeptidase;
Pssm-ID: 425859 [Multi-domain] Cd Length: 234 Bit Score: 158.70 E-value: 5.34e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 54 QTGQILYEFQSEQQWYPASMTKLMTMYLTLQAVKEKKLSLNDTVQITDQHYRMSTlPELSNTKLYPGETYTVAELLQITV 133
Cdd:pfam00768 17 NTGKVLYEKNPDQVRPIASITKLMTAYVVLEALKAGKIKEDDMVTISEDAWATGN-PGSSNIFLKPGSQVSVKDLLRGAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 134 SASSNAAALILANQVSDSTSDFVDKMNDTAKSLGMTHTHYVNPTGAENrlllefaPKKYqhessstSSARDYAILAQHVV 213
Cdd:pfam00768 96 VSSGNDAAVALAEHIAGSEKAFVK*MNAKAKELGLKNTRFVNPTGLDA-------HGQY-------SSARDMAILAKALI 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2254949670 214 KDTPKILYFTKQiaPTQHGVTYYTFNDLLEGG--NMSLPGTDGLKTGSSDIADYNNSLTTKRGKFRIFHIIMGA 285
Cdd:pfam00768 162 KDLPEELSITKE--KSFTFRGINKINQRNRNGllWDKTWNVDGLKTGYTNEAGYCLVASATKGGMRLISVVMGA 233
|
|
| dacD |
PRK11397 |
serine-type D-Ala-D-Ala carboxypeptidase DacD; |
1-322 |
3.39e-27 |
|
serine-type D-Ala-D-Ala carboxypeptidase DacD;
Pssm-ID: 183117 [Multi-domain] Cd Length: 388 Bit Score: 111.84 E-value: 3.39e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 1 MKKIILsIVVVFFASTIITPFARA---YTPTPVELaqQSGYPVTWAYQpegminisqTGQILYEFQSEQQWYPASMTKLM 77
Cdd:PRK11397 1 LKRRLI-IAASLFAFNLSSAFAAEnipFSPQPPAI--DAGSWVLMDYT---------TGQILTAGNEHQQRNPASLTKLM 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 78 TMYLTLQAVKEKKLSLNDTVQITDQHYRMSTlPELSNTKLY---PGETYTVAELLQITVSASSNAAALILANQVSDSTSD 154
Cdd:PRK11397 69 TGYVVDRAIDSHRITPDDIVTVGRDAWAKDN-PVFVGSSLMflkEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 155 FVDKMNDTAKSLGMTHTHYVNPTGAEnrlllefAPKkyQHessstSSARDYAILAQHVVKDTPKILYFTKQIAPTQHGVT 234
Cdd:PRK11397 148 FVEMMNNYVEKLHLKDTHFETVHGLD-------APG--QH-----SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGIT 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 235 YYTFNDLLEGGNMSLpgtDGLKTGSSDIADYNNSLTTKRGKFRIFHIIMGAGDYKhlGGEKQ-RNMMSASAINYTFSQyd 313
Cdd:PRK11397 214 QQNRNGLLWDKTMNV---DGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAK--GREEQaRKLLRWGQQNFTTVQ-- 286
|
....*....
gi 2254949670 314 ykkIVSKGK 322
Cdd:PRK11397 287 ---ILHRGK 292
|
|
| PRK10001 |
PRK10001 |
serine-type D-Ala-D-Ala carboxypeptidase; |
55-285 |
4.15e-26 |
|
serine-type D-Ala-D-Ala carboxypeptidase;
Pssm-ID: 182189 [Multi-domain] Cd Length: 400 Bit Score: 108.93 E-value: 4.15e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 55 TGQILYEFQSEQQWYPASMTKLMTMYLTLQAVKEKKLSLNDTVQITDQHYRMSTlPELSNTK---LYPGETYTVAELLQI 131
Cdd:PRK10001 49 SGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGN-PALRGSSvmfLKPGDQVSVADLNKG 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 132 TVSASSNAAALILANQVSDSTSDFVDKMNDTAKSLGMTHTHYVNPTGAEnrlllefAPKKYqhessstSSARDYAILAQH 211
Cdd:PRK10001 128 VIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLD-------APGQF-------STARDMALLGKA 193
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2254949670 212 VVKDTPKILYFTKQIAPTQHGVTYYTFNDLLEGGNMSLpgtDGLKTGSSDIADYNNSLTTKRGKFRIFHIIMGA 285
Cdd:PRK10001 194 LIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNV---DGMKTGTTAGAGYNLVASATQGDMRLISVVLGA 264
|
|
| PRK10793 |
PRK10793 |
D-alanyl-D-alanine carboxypeptidase fraction A; Provisional |
55-289 |
8.73e-24 |
|
D-alanyl-D-alanine carboxypeptidase fraction A; Provisional
Pssm-ID: 182736 [Multi-domain] Cd Length: 403 Bit Score: 102.24 E-value: 8.73e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 55 TGQILYEFQSEQQWYPASMTKLMTMYLTLQAVKEKKLSLNDTVQITDQHYRMSTlPELSNTKLY---PGETYTVAELLQI 131
Cdd:PRK10793 56 SGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGN-PVFKGSSLMflkPGMQVPVSQLIRG 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 132 TVSASSNAAALILANQVSDSTSDFVDKMNDTAKSLGMTHTHYVNPTGAEnrlllefAPKKYqhessstSSARDYAILAQH 211
Cdd:PRK10793 135 INLQSGNDACVAMADYVAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLD-------ADGQY-------SSARDMALIGQA 200
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2254949670 212 VVKDTPKILYFTKQIAPTQHGVTYYTFNDLLEGGNMSLpgtDGLKTGSSDIADYNNSLTTKRGKFRIFHIIMGAGDYK 289
Cdd:PRK10793 201 LIRDVPNEYAIYKEKEFTFNGIRQLNRNGLLWDNSLNV---DGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFK 275
|
|
| DUF1958 |
pfam09211 |
Domain of unknown function (DUF1958); Members of this functionally uncharacterized family are ... |
314-378 |
2.24e-19 |
|
Domain of unknown function (DUF1958); Members of this functionally uncharacterized family are found in prokaryotic penicillin-binding protein 4.
Pssm-ID: 401233 Cd Length: 63 Bit Score: 81.35 E-value: 2.24e-19
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2254949670 314 YKKIVSKGKHKIDGKSYYVTEDLYDVVPKDmsKPYHLVVKDSQVHLDYPRKFITKNDGPPTVKVE 378
Cdd:pfam09211 1 YKKVLSKGVQTINGKKVYVANDLYDVVPKD--SQPTFKLKDGKVQVDYPRTFLNSTYQAPTVAYQ 63
|
|
| pbpG |
PRK11669 |
D-alanyl-D-alanine endopeptidase; Provisional |
2-178 |
3.75e-17 |
|
D-alanyl-D-alanine endopeptidase; Provisional
Pssm-ID: 236952 Cd Length: 306 Bit Score: 81.65 E-value: 3.75e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 2 KKIILSIV--VVFFASTIITPFARAYTPT------PVELAQQSGypvtwayqpegMINISQTGQILYEFQSEQQWYPASM 73
Cdd:PRK11669 1 MKFRVSLLslLLLLAGVPFAPQAVAKTAAattasqPQEIASGSA-----------MVVDLNTNKVIYSSNPDLVVPIASI 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 74 TKLMTMYLTLQAvkekKLSLNDTVQITdqhyrMSTLPEL----SNTKLypGETYTVAELLQITVSASSNAAALILANQVS 149
Cdd:PRK11669 70 TKLMTAMVVLDA----KLPLDEKLKVD-----ISQTPEMkgvySRVRL--NSEISRKDMLLLALMSSENRAAASLAHHYP 138
|
170 180
....*....|....*....|....*....
gi 2254949670 150 DSTSDFVDKMNDTAKSLGMTHTHYVNPTG 178
Cdd:PRK11669 139 GGYKAFIKAMNAKAKALGMTNTRYVEPTG 167
|
|
| PenP |
COG2367 |
Beta-lactamase class A [Defense mechanisms]; |
55-216 |
1.62e-13 |
|
Beta-lactamase class A [Defense mechanisms];
Pssm-ID: 441934 [Multi-domain] Cd Length: 276 Bit Score: 70.31 E-value: 1.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 55 TGQiLYEFQSEQQWYPASMTKLMTMYLTLQAVKEKKLSLNDTVQITDQHYRMSTlPELSntKLYPGETYTVAELLQITVS 134
Cdd:COG2367 44 TGE-TVGINADERFPAASTFKLPVLAAVLRQVDAGKLSLDERVTLTPEDLVGGS-GILQ--KLPDGTGLTLRELAELMIT 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 135 ASSNAAALILANQVSdstsdfVDKMNDTAKSLGMTHTHYVNPTGAENRlllefapkkYQHESSSTSSARDYAILAQHVVK 214
Cdd:COG2367 120 VSDNTATNLLLRLLG------PDAVNAFLRSLGLTDTRLDRKEPDLNE---------LPGDGRNTTTPRDMARLLAALYR 184
|
..
gi 2254949670 215 DT 216
Cdd:COG2367 185 GE 186
|
|
| Beta-lactamase2 |
pfam13354 |
Beta-lactamase enzyme family; This is the catalytic domain of class A beta-lactamases. It is ... |
54-216 |
4.47e-12 |
|
Beta-lactamase enzyme family; This is the catalytic domain of class A beta-lactamases. It is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
Pssm-ID: 463854 [Multi-domain] Cd Length: 215 Bit Score: 64.99 E-value: 4.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 54 QTGQiLYEFQSEQQWYPASMTKLMTMYLTLQAVKEKKLSLNDTVQITDQHYR--MSTLPELSntklyPGETYTVAELLQI 131
Cdd:pfam13354 8 DTGE-ELGINGDRSFPAASTIKVPILLAVLEQVDEGKLSLDERLTVTAEDKVggSGILQYLP-----DGSQLSLRDLLTL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 132 TVSASSNAAALILANQVSdstsdfVDKMNDTAKSLGMTHTHyvnptgaENRLLLEFAPKKyqHESSSTSSARDYAILAQH 211
Cdd:pfam13354 82 MIAVSDNTATNLLIDRLG------LEAVNARLRALGLRDTR-------LRRKLPDLRAAD--KGGTNTTTARDMAKLLEA 146
|
....*
gi 2254949670 212 VVKDT 216
Cdd:pfam13354 147 LYRGE 151
|
|
| AmpC |
COG1680 |
CubicO group peptidase, beta-lactamase class C family [Defense mechanisms]; |
71-210 |
1.67e-05 |
|
CubicO group peptidase, beta-lactamase class C family [Defense mechanisms];
Pssm-ID: 441286 [Multi-domain] Cd Length: 355 Bit Score: 46.60 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 71 ASMTKLMTMYLTLQAVKEKKLSLNDTVqitdQHYrmstLPELSNTKlYPGETYTVAELLQIT--VSASSNAAALILANQV 148
Cdd:COG1680 71 ASVTKSFTATAVLQLVEEGKLDLDDPV----SKY----LPEFKLPD-DAKRDITVRHLLTHTsgLPDYEPDPYDAADVAR 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 149 SDSTSDFVDKMND----------------------------TAKS------------LGMTHTHYVNPTGAENRLLLEFA 188
Cdd:COG1680 142 PYTPDDLLARLAAlpllfepgtrfsysnlgydllgeiiervTGQPledylrerifepLGMTDTGFGLPDAEAARLAPGYE 221
|
170 180 190
....*....|....*....|....*....|...
gi 2254949670 189 PKKYQHESSST-----------SSARDYAILAQ 210
Cdd:COG1680 222 ADGEVHDAPAWlgavagagglfSTARDLARFGQ 254
|
|
| Beta-lactamase |
pfam00144 |
Beta-lactamase; This family appears to be distantly related to pfam00905 and PF00768 ... |
71-211 |
1.96e-04 |
|
Beta-lactamase; This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
Pssm-ID: 395092 [Multi-domain] Cd Length: 327 Bit Score: 43.26 E-value: 1.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 71 ASMTKLMTMYLTLQAVKEKKLSLNDTVQ-------------ITDQH---YRmSTLPELSNTKLYPGETYTVAELLQI--- 131
Cdd:pfam00144 53 ASVTKTFTAAAVLQLVERGKLDLDDPVSkylpefagpgkggITLRDlltHT-SGLPPLFAPDDLEEAAADAAELVRAlaa 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949670 132 --------TVSASSNAAALILANQVSDSTS-DFVDKMNDT-AKSLGMTHTHYVNPTGAENRL-----------LLEFAPK 190
Cdd:pfam00144 132 lppvwppgTRWGYSNTAYGLLGELLERVTGqSYEELLGDRiLRPLGMTDTELGVPEPGDPRDaagytgegppvRVPPGPL 211
|
170 180
....*....|....*....|.
gi 2254949670 191 KYQHESSSTSSARDYAILAQH 211
Cdd:pfam00144 212 PAGAYGGLKSTARDLARFLLA 232
|
|
| |
