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Conserved domains on  [gi|2254949674|gb|USH35901|]
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CDP-glycerol glycerophosphotransferase family protein [Staphylococcus pseudintermedius]

Protein Classification

CDP-glycerol glycerophosphotransferase family protein( domain architecture ID 10004838)

CDP-glycerol glycerophosphotransferase family protein similar to Bacillus spizizenii teichoic acid ribitol-phosphate primase, teichoic acid glycerol-phosphate primase and teichoic acid poly(ribitol-phosphate) polymerase

EC:  2.7.8.-
Gene Ontology:  GO:0047355|GO:0071555|GO:0019350

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TagB COG1887
CDP-glycerol glycerophosphotransferase, TagB/SpsB family [Cell wall/membrane/envelope ...
9-357 1.19e-47

CDP-glycerol glycerophosphotransferase, TagB/SpsB family [Cell wall/membrane/envelope biogenesis, Lipid transport and metabolism];


:

Pssm-ID: 441491  Cd Length: 369  Bit Score: 165.16  E-value: 1.19e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674   9 FYICMVACLSRLYSALRIDRKHIVFLM----TFKEDQLPIIYQLSQRGFNIT-VFAKPKDFHYLENRKqitYYPLKQSSi 83
Cdd:COG1887     2 LLLLLRRLYYRLSRLLPVKKNIILFESrngrSYSDNPKALFEYLRKNHPDYEvVWVVDDDSKRLPKEG---VKVVKRGS- 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674  84 LKQLAALATAKVVFIDTYYLIMAGWRKKEGQTVIQTWHAAgALKKFGLEDHSVDLtqkehvDQYCAVYQATDKYLVGGQQ 163
Cdd:COG1887    78 LKYLYALARAKYLVSNHYFPFPSYFRKRKGQKYVQLWHGT-PLKKIGLDDPPRYL------KRVLREYRNWDYLLSSSEE 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674 164 MADCFEKAFGARYEQLLSFGSPRLTTYRHIDRHAHQQKLKKQLGIQN--KVAVYLPTYREGGQTNRTIDKETFETAV--- 238
Cdd:COG1887   151 STEIFRRAFGYPEGEVLETGYPRNDVLFDADREELREELRERLGIPEdkKVILYAPTWRDDEDNFDDYLDLDLERLAell 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674 239 -PGYTLLSKYHPTVS-----AAAENIK-----MCTLDLIVLADLIITDYSSLAIEASIVNTPTLFYVYDEADYEIVRGLn 307
Cdd:COG1887   231 gDDYVLLVRLHPFVKdsldeKYSDRIIdvsdyPDINDLLLASDVLITDYSSVMFDFALLDRPIIFYAYDLEEYRDERGF- 309
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2254949674 308 kyYYDIPQE---YKAYDERTLYERINEG---------QLQPLFQKWHQYNTSESLNQVVNYV 357
Cdd:COG1887   310 --YFDYEEDapgPVVTTFEELIDAIEDIlengdeyaeKYKAFRERFFPYDDGNASERVVDAI 369
 
Name Accession Description Interval E-value
TagB COG1887
CDP-glycerol glycerophosphotransferase, TagB/SpsB family [Cell wall/membrane/envelope ...
9-357 1.19e-47

CDP-glycerol glycerophosphotransferase, TagB/SpsB family [Cell wall/membrane/envelope biogenesis, Lipid transport and metabolism];


Pssm-ID: 441491  Cd Length: 369  Bit Score: 165.16  E-value: 1.19e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674   9 FYICMVACLSRLYSALRIDRKHIVFLM----TFKEDQLPIIYQLSQRGFNIT-VFAKPKDFHYLENRKqitYYPLKQSSi 83
Cdd:COG1887     2 LLLLLRRLYYRLSRLLPVKKNIILFESrngrSYSDNPKALFEYLRKNHPDYEvVWVVDDDSKRLPKEG---VKVVKRGS- 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674  84 LKQLAALATAKVVFIDTYYLIMAGWRKKEGQTVIQTWHAAgALKKFGLEDHSVDLtqkehvDQYCAVYQATDKYLVGGQQ 163
Cdd:COG1887    78 LKYLYALARAKYLVSNHYFPFPSYFRKRKGQKYVQLWHGT-PLKKIGLDDPPRYL------KRVLREYRNWDYLLSSSEE 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674 164 MADCFEKAFGARYEQLLSFGSPRLTTYRHIDRHAHQQKLKKQLGIQN--KVAVYLPTYREGGQTNRTIDKETFETAV--- 238
Cdd:COG1887   151 STEIFRRAFGYPEGEVLETGYPRNDVLFDADREELREELRERLGIPEdkKVILYAPTWRDDEDNFDDYLDLDLERLAell 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674 239 -PGYTLLSKYHPTVS-----AAAENIK-----MCTLDLIVLADLIITDYSSLAIEASIVNTPTLFYVYDEADYEIVRGLn 307
Cdd:COG1887   231 gDDYVLLVRLHPFVKdsldeKYSDRIIdvsdyPDINDLLLASDVLITDYSSVMFDFALLDRPIIFYAYDLEEYRDERGF- 309
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2254949674 308 kyYYDIPQE---YKAYDERTLYERINEG---------QLQPLFQKWHQYNTSESLNQVVNYV 357
Cdd:COG1887   310 --YFDYEEDapgPVVTTFEELIDAIEDIlengdeyaeKYKAFRERFFPYDDGNASERVVDAI 369
Glyphos_transf pfam04464
CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Wall-associated teichoic acids ...
84-359 1.01e-29

CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.


Pssm-ID: 398259  Cd Length: 360  Bit Score: 117.06  E-value: 1.01e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674  84 LKQLAALATAKVVFIDTYyliMAGW-RKKEGQTVIQTWHAAgALKKFGLEDHSVdlTQKEHVDQYCAVYQATDKYLVGGQ 162
Cdd:pfam04464  61 FRYLYLLLRAKYLVSNSN---FPLYvVKRKNQVYLQTWHGT-PLKHMGLDILEV--PMANTGQNFLRNVDRWDYLISANP 134
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674 163 QMADCFEKAFGARYEQLLSFGSPRLTTYRHiDRHAHQQKLKKQLGIQ--NKVAVYLPTYREGGQTNRT-------IDKET 233
Cdd:pfam04464 135 HSTNIFARAFNIDKERILETGYPRNDVLFN-ANNEDVQRIRERLGIPlgKKVILYAPTWRDDERGSIGsyrfellIDLER 213
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674 234 FETAV-PGYTLLSKYHPTVSAAAENIK-----------MCTLDLIVLADLIITDYSSLAIEASIVNTPTLFYVYDEADYE 301
Cdd:pfam04464 214 LAFALgNDYVILLKMHPLIQNNIDIFEssgyvvdvsdyEDVEDLLLASDILITDYSSVMFDYAVLDRPIIFYAYDLETYS 293
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674 302 IVRGLnkyYYDIPQEY---KAYDERTLYERI---------NEGQLQPLFQKWHQYNTSESLNQVVNYVEK 359
Cdd:pfam04464 294 ATRGF---YLDYESEApgpVVETFDELIDALksgdwdddyYARKRRAFRDRFCKYDDGRSSERVVRLIFL 360
 
Name Accession Description Interval E-value
TagB COG1887
CDP-glycerol glycerophosphotransferase, TagB/SpsB family [Cell wall/membrane/envelope ...
9-357 1.19e-47

CDP-glycerol glycerophosphotransferase, TagB/SpsB family [Cell wall/membrane/envelope biogenesis, Lipid transport and metabolism];


Pssm-ID: 441491  Cd Length: 369  Bit Score: 165.16  E-value: 1.19e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674   9 FYICMVACLSRLYSALRIDRKHIVFLM----TFKEDQLPIIYQLSQRGFNIT-VFAKPKDFHYLENRKqitYYPLKQSSi 83
Cdd:COG1887     2 LLLLLRRLYYRLSRLLPVKKNIILFESrngrSYSDNPKALFEYLRKNHPDYEvVWVVDDDSKRLPKEG---VKVVKRGS- 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674  84 LKQLAALATAKVVFIDTYYLIMAGWRKKEGQTVIQTWHAAgALKKFGLEDHSVDLtqkehvDQYCAVYQATDKYLVGGQQ 163
Cdd:COG1887    78 LKYLYALARAKYLVSNHYFPFPSYFRKRKGQKYVQLWHGT-PLKKIGLDDPPRYL------KRVLREYRNWDYLLSSSEE 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674 164 MADCFEKAFGARYEQLLSFGSPRLTTYRHIDRHAHQQKLKKQLGIQN--KVAVYLPTYREGGQTNRTIDKETFETAV--- 238
Cdd:COG1887   151 STEIFRRAFGYPEGEVLETGYPRNDVLFDADREELREELRERLGIPEdkKVILYAPTWRDDEDNFDDYLDLDLERLAell 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674 239 -PGYTLLSKYHPTVS-----AAAENIK-----MCTLDLIVLADLIITDYSSLAIEASIVNTPTLFYVYDEADYEIVRGLn 307
Cdd:COG1887   231 gDDYVLLVRLHPFVKdsldeKYSDRIIdvsdyPDINDLLLASDVLITDYSSVMFDFALLDRPIIFYAYDLEEYRDERGF- 309
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2254949674 308 kyYYDIPQE---YKAYDERTLYERINEG---------QLQPLFQKWHQYNTSESLNQVVNYV 357
Cdd:COG1887   310 --YFDYEEDapgPVVTTFEELIDAIEDIlengdeyaeKYKAFRERFFPYDDGNASERVVDAI 369
Glyphos_transf pfam04464
CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Wall-associated teichoic acids ...
84-359 1.01e-29

CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.


Pssm-ID: 398259  Cd Length: 360  Bit Score: 117.06  E-value: 1.01e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674  84 LKQLAALATAKVVFIDTYyliMAGW-RKKEGQTVIQTWHAAgALKKFGLEDHSVdlTQKEHVDQYCAVYQATDKYLVGGQ 162
Cdd:pfam04464  61 FRYLYLLLRAKYLVSNSN---FPLYvVKRKNQVYLQTWHGT-PLKHMGLDILEV--PMANTGQNFLRNVDRWDYLISANP 134
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674 163 QMADCFEKAFGARYEQLLSFGSPRLTTYRHiDRHAHQQKLKKQLGIQ--NKVAVYLPTYREGGQTNRT-------IDKET 233
Cdd:pfam04464 135 HSTNIFARAFNIDKERILETGYPRNDVLFN-ANNEDVQRIRERLGIPlgKKVILYAPTWRDDERGSIGsyrfellIDLER 213
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674 234 FETAV-PGYTLLSKYHPTVSAAAENIK-----------MCTLDLIVLADLIITDYSSLAIEASIVNTPTLFYVYDEADYE 301
Cdd:pfam04464 214 LAFALgNDYVILLKMHPLIQNNIDIFEssgyvvdvsdyEDVEDLLLASDILITDYSSVMFDYAVLDRPIIFYAYDLETYS 293
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2254949674 302 IVRGLnkyYYDIPQEY---KAYDERTLYERI---------NEGQLQPLFQKWHQYNTSESLNQVVNYVEK 359
Cdd:pfam04464 294 ATRGF---YLDYESEApgpVVETFDELIDALksgdwdddyYARKRRAFRDRFCKYDDGRSSERVVRLIFL 360
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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