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Conserved domains on  [gi|2309079983|gb|UXK02677|]
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DUF3748 domain-containing protein [Pectobacterium aroidearum]

Protein Classification

DUF3748 domain-containing protein( domain architecture ID 10576252)

DUF3748 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3748 pfam12566
Protein of unknown function (DUF3748); This domain family is found in bacteria and eukaryotes, ...
 66-185 4.82e-72

Protein of unknown function (DUF3748); This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length. It is likely to contain 2 to 3 copies of a PD40-like repeat.


:

Pssm-ID: 432640  Cd Length: 119  Bit Score: 221.88  E-value: 4.82e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983  66 HVGVVTCSPQEPlRYVFIHGPENPDGEWQYDFHHRRGTIVADCQRDEAITLDAFSITSPYQAGALRGGTHVHVFSPDASR 145
Cdd:pfam12566   1 HVGVVTVSPQEN-RYVFIHGPENPDPQWQYDFHHRRGVIVEDDEPGQAITLDAMDITPPYTPGALRGGSHVHVFSPDGQW 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2309079983 146 LSFTYNDHVLHERDPALNLRNVGVAVPLQAVTVEKRHPRE 185
Cdd:pfam12566  80 VSFTYNDHVLHELDPALDLRNVGVAVPLGPVVVNKHHPRE 119
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
 289-424 1.44e-23

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 96.28  E-value: 1.44e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983 289 RRLTFThsrryPGLVNQPRhWlraSPDGSEIAFlMRDEAGVVQLWTISPNGGEPRQVTHtEHGVQSAFNWHPDGRSLAFV 368
Cdd:COG0823    24 RRLTNS-----PGIDTSPA-W---SPDGRRIAF-TSDRGGGPQIYVVDADGGEPRRLTF-GGGYNASPSWSPDGKRLAFV 92

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983 369 CDNS----IMLCEAKSGELVRLTaRTDSAPSadavvFSPDGKHIAYMREIDGFNQLFVVT 424
Cdd:COG0823    93 SRSDgrfdIYVLDLDGGAPRRLT-DGPGSPS-----WSPDGRRIVFSSDRGGRPDLYVVD 146
 
Name Accession Description Interval E-value
DUF3748 pfam12566
Protein of unknown function (DUF3748); This domain family is found in bacteria and eukaryotes, ...
 66-185 4.82e-72

Protein of unknown function (DUF3748); This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length. It is likely to contain 2 to 3 copies of a PD40-like repeat.


Pssm-ID: 432640  Cd Length: 119  Bit Score: 221.88  E-value: 4.82e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983  66 HVGVVTCSPQEPlRYVFIHGPENPDGEWQYDFHHRRGTIVADCQRDEAITLDAFSITSPYQAGALRGGTHVHVFSPDASR 145
Cdd:pfam12566   1 HVGVVTVSPQEN-RYVFIHGPENPDPQWQYDFHHRRGVIVEDDEPGQAITLDAMDITPPYTPGALRGGSHVHVFSPDGQW 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2309079983 146 LSFTYNDHVLHERDPALNLRNVGVAVPLQAVTVEKRHPRE 185
Cdd:pfam12566  80 VSFTYNDHVLHELDPALDLRNVGVAVPLGPVVVNKHHPRE 119
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
 289-424 1.44e-23

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 96.28  E-value: 1.44e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983 289 RRLTFThsrryPGLVNQPRhWlraSPDGSEIAFlMRDEAGVVQLWTISPNGGEPRQVTHtEHGVQSAFNWHPDGRSLAFV 368
Cdd:COG0823    24 RRLTNS-----PGIDTSPA-W---SPDGRRIAF-TSDRGGGPQIYVVDADGGEPRRLTF-GGGYNASPSWSPDGKRLAFV 92

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983 369 CDNS----IMLCEAKSGELVRLTaRTDSAPSadavvFSPDGKHIAYMREIDGFNQLFVVT 424
Cdd:COG0823    93 SRSDgrfdIYVLDLDGGAPRRLT-DGPGSPS-----WSPDGRRIVFSSDRGGRPDLYVVD 146
tolB PRK01029
Tol-Pal system protein TolB;
313-422 1.16e-06

Tol-Pal system protein TolB;


Pssm-ID: 234889 [Multi-domain]  Cd Length: 428  Bit Score: 50.53  E-value: 1.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983 313 SPDGSEIAFLmRDEAG----VVQLWTISPNG-GEPRQVTHTEHGVQSAFNWHPDGRSLAFVCDNS------IMLC--EAK 379
Cdd:PRK01029  239 SPRKKLLAFI-SDRYGnpdlFIQSFSLETGAiGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDgrpriyIMQIdpEGQ 317

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2309079983 380 SGELVRLTARTDSAPSadavvFSPDGKHIAYMREIDGFNQLFV 422
Cdd:PRK01029  318 SPRLLTKKYRNSSCPA-----WSPDGKKIAFCSVIKGVRQICV 355
DPPIV_N pfam00930
Dipeptidyl peptidase IV (DPP IV) N-terminal region; This family is an alignment of the region ...
 340-412 1.86e-04

Dipeptidyl peptidase IV (DPP IV) N-terminal region; This family is an alignment of the region to the N-terminal side of the active site. The Prosite motif does not correspond to this Pfam entry.


Pssm-ID: 395744 [Multi-domain]  Cd Length: 352  Bit Score: 43.46  E-value: 1.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983 340 GEPRQVTHTEHGVQSAfNWHPDGRSLAFVCDNSIMLCEAKSGELVRLTarTDSAPS-----AD------------AVVFS 402
Cdd:pfam00930  33 NRVEPLPPGEGKIQDA-KWSPDGDRLAFVRDNNLYVRELATGKEIQIT--SDGSDGifngvADwvyeeevlgsnsAVWWS 109

                          90
                  ....*....|
gi 2309079983 403 PDGKHIAYMR 412
Cdd:pfam00930 110 PDGSRLAFLR 119
 
Name Accession Description Interval E-value
DUF3748 pfam12566
Protein of unknown function (DUF3748); This domain family is found in bacteria and eukaryotes, ...
 66-185 4.82e-72

Protein of unknown function (DUF3748); This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length. It is likely to contain 2 to 3 copies of a PD40-like repeat.


Pssm-ID: 432640  Cd Length: 119  Bit Score: 221.88  E-value: 4.82e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983  66 HVGVVTCSPQEPlRYVFIHGPENPDGEWQYDFHHRRGTIVADCQRDEAITLDAFSITSPYQAGALRGGTHVHVFSPDASR 145
Cdd:pfam12566   1 HVGVVTVSPQEN-RYVFIHGPENPDPQWQYDFHHRRGVIVEDDEPGQAITLDAMDITPPYTPGALRGGSHVHVFSPDGQW 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2309079983 146 LSFTYNDHVLHERDPALNLRNVGVAVPLQAVTVEKRHPRE 185
Cdd:pfam12566  80 VSFTYNDHVLHELDPALDLRNVGVAVPLGPVVVNKHHPRE 119
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
 289-424 1.44e-23

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 96.28  E-value: 1.44e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983 289 RRLTFThsrryPGLVNQPRhWlraSPDGSEIAFlMRDEAGVVQLWTISPNGGEPRQVTHtEHGVQSAFNWHPDGRSLAFV 368
Cdd:COG0823    24 RRLTNS-----PGIDTSPA-W---SPDGRRIAF-TSDRGGGPQIYVVDADGGEPRRLTF-GGGYNASPSWSPDGKRLAFV 92

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983 369 CDNS----IMLCEAKSGELVRLTaRTDSAPSadavvFSPDGKHIAYMREIDGFNQLFVVT 424
Cdd:COG0823    93 SRSDgrfdIYVLDLDGGAPRRLT-DGPGSPS-----WSPDGRRIVFSSDRGGRPDLYVVD 146
TolB COG0823
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ...
 319-424 3.91e-17

Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440585 [Multi-domain]  Cd Length: 158  Bit Score: 78.18  E-value: 3.91e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983 319 IAFlMRDEAGVVQLWTISPNGGEPRQVTHTEHGVQSAFnWHPDGRSLAFVCDNS----IMLCEAKSGELVRLTartDSAP 394
Cdd:COG0823     1 LAF-TLSRDGNSDIYVVDLDGGEPRRLTNSPGIDTSPA-WSPDGRRIAFTSDRGggpqIYVVDADGGEPRRLT---FGGG 75

                          90       100       110
                  ....*....|....*....|....*....|
gi 2309079983 395 SADAVVFSPDGKHIAYMREIDGFNQLFVVT 424
Cdd:COG0823    76 YNASPSWSPDGKRLAFVSRSDGRFDIYVLD 105
COG4946 COG4946
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
 307-411 3.65e-14

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 74.69  E-value: 3.65e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983  307 RHWLRASPDGSEIAFLmrDEAGvvQLWTISPNGGEPRQVTHTEHGVQ-SAFNWHPDGRSLAFVCDNS-----IMLCEAKS 380
Cdd:COG4946    391 VFNPVWSPDGKKIAFT--DNRG--RLWVVDLASGKVRKVDTDGYGDGiSDLAWSPDSKWLAYSKPGPnqlsqIFLYDVET 466

                           90       100       110
                   ....*....|....*....|....*....|...
gi 2309079983  381 GELVRLT--ARTDSAPsadavVFSPDGKHIAYM 411
Cdd:COG4946    467 GKTVQLTdgRYDDGSP-----AFSPDGKYLYFL 494
COG4946 COG4946
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
 289-423 1.00e-12

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 70.07  E-value: 1.00e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983  289 RRLTFTHSRRYpglvnqpRH--WlraSPDGSEIAFLmRDEAGVVQLWTISPNG-GEPRQVTHTEHGVQSAFNWHPDGRSL 365
Cdd:COG4946    335 RNLTNTPGVRE-------RLpaW---SPDGKSIAYF-SDASGEYELYIAPADGsGEPKQLTLGDLGRVFNPVWSPDGKKI 403

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983  366 AFVC-DNSIMLCEAKSGElVRLTARTDSAPSADAVVFSPDGKHIAYMREID-GFNQLFVV 423
Cdd:COG4946    404 AFTDnRGRLWVVDLASGK-VRKVDTDGYGDGISDLAWSPDSKWLAYSKPGPnQLSQIFLY 462
COG4946 COG4946
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
 267-412 2.28e-12

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 68.91  E-value: 2.28e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983  267 EGD---APLAG-TAtsmpsppagvqqRRLTfTHsrryPGLVNQPRhWlraSPDGSEIAFlMRDEAGVVQLWTISPNGGEP 342
Cdd:COG4946     40 AGDlwtVPADGgRA------------RRLT-SH----PGYESFPR-F---SPDGKWIAF-TSDYDGNTDVYVMPAEGGEP 97

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983  343 RQVTHteHG----VQSafnWHPDGRSLAFVCD--------NSIMLCEAKSGELVRLtartdSAPSADAVVFSPDGKHIAY 410
Cdd:COG4946     98 KRLTY--HPandrVVG---WTPDGKSVLFASNrgsppsrsNQLYTVPVDGGLPERL-----PLPPAGDGSFSPDGKKLAY 167


                   ..
gi 2309079983  411 MR 412
Cdd:COG4946    168 TR 169
COG4946 COG4946
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
 313-423 1.65e-10

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 63.13  E-value: 1.65e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983  313 SPDGSEIAFLMRDEagvvqLWTISPNGGEPRQVTHT----EHGVQsafnWHPDGRSLAFVCDnsimlceaKSGE--LVRL 386
Cdd:COG4946    310 SPDGKRVAFEARGE-----VFTVPAEKGPTRNLTNTpgvrERLPA----WSPDGKSIAYFSD--------ASGEyeLYIA 372

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 2309079983  387 TARTDSAPSA---------DAVVFSPDGKHIAYmreIDGFNQLFVV 423
Cdd:COG4946    373 PADGSGEPKQltlgdlgrvFNPVWSPDGKKIAF---TDNRGRLWVV 415
WD40 COG2319
WD40 repeat [General function prediction only];
313-409 1.29e-09

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 59.54  E-value: 1.29e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983 313 SPDGSEIAFLMRDeaGVVQLWTISpNGGEPRQVTHTEHGVQSAfNWHPDGRSLAFVC-DNSIMLCEAKSGELVRLTARTD 391
Cdd:COG2319   213 SPDGKLLASGSAD--GTVRLWDLA-TGKLLRTLTGHSGSVRSV-AFSPDGRLLASGSaDGTVRLWDLATGELLRTLTGHS 288

                          90
                  ....*....|....*...
gi 2309079983 392 SAPSAdaVVFSPDGKHIA 409
Cdd:COG2319   289 GGVNS--VAFSPDGKLLA 304
WD40 COG2319
WD40 repeat [General function prediction only];
313-409 4.57e-09

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 58.00  E-value: 4.57e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983 313 SPDGSEIAFLMRDeaGVVQLWtiSPNGGEPRQVTHTEHGVQSAFNWHPDGRSLAFVC-DNSIMLCEAKSGELVR-LTART 390
Cdd:COG2319   255 SPDGRLLASGSAD--GTVRLW--DLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSdDGTVRLWDLATGKLLRtLTGHT 330

                          90
                  ....*....|....*....
gi 2309079983 391 DSAPSadaVVFSPDGKHIA 409
Cdd:COG2319   331 GAVRS---VAFSPDGKTLA 346
WD40 COG2319
WD40 repeat [General function prediction only];
226-409 3.11e-08

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 55.30  E-value: 3.11e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983 226 QDGSRQRWALAFIGDTRAADGTTVPEIFIVDLPDALEDYAKEGDAPLAGTATSMPSPPAGVQQRRLTFTHSRRYPGLVNQ 305
Cdd:COG2319     1 ALSADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983 306 PRHwLRASPDGSEIAFLMRDeaGVVQLWTISpNGGEPRQVTHTEHGVQSAfNWHPDGRSLAFVC-DNSIMLCEAKSGELV 384
Cdd:COG2319    81 VLS-VAFSPDGRLLASASAD--GTVRLWDLA-TGLLLRTLTGHTGAVRSV-AFSPDGKTLASGSaDGTVRLWDLATGKLL 155

                         170       180
                  ....*....|....*....|....*.
gi 2309079983 385 R-LTARTDSApsaDAVVFSPDGKHIA 409
Cdd:COG2319   156 RtLTGHSGAV---TSVAFSPDGKLLA 178
WD40 COG2319
WD40 repeat [General function prediction only];
229-409 4.81e-08

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 54.92  E-value: 4.81e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983 229 SRQRWALAFIGDTRAADGTTVPEIFIVDLPDALEDYAKEGDAPLAGTATSMPSPPAGV-----QQRRLTFTHSRRYPGLV 303
Cdd:COG2319    37 AAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLAsasadGTVRLWDLATGLLLRTL 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983 304 NQPRHWLRA---SPDGSEIAFLMRDeaGVVQLWtiSPNGGEPRQVTHTEHGVQSAFNWHPDGRSLAFVC-DNSIMLCEAK 379
Cdd:COG2319   117 TGHTGAVRSvafSPDGKTLASGSAD--GTVRLW--DLATGKLLRTLTGHSGAVTSVAFSPDGKLLASGSdDGTVRLWDLA 192

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2309079983 380 SGELVR-LTARTDSApsaDAVVFSPDGKHIA 409
Cdd:COG2319   193 TGKLLRtLTGHTGAV---RSVAFSPDGKLLA 220
WD40 COG2319
WD40 repeat [General function prediction only];
313-409 2.37e-07

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 52.61  E-value: 2.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983 313 SPDGSEIAFLMRDeaGVVQLWtiSPNGGEPRQVTHTEHGVQSAFNWHPDGRSLAFVC-DNSIMLCEAKSGELVR-LTART 390
Cdd:COG2319   297 SPDGKLLASGSDD--GTVRLW--DLATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSdDGTVRLWDLATGELLRtLTGHT 372

                          90
                  ....*....|....*....
gi 2309079983 391 DSApsaDAVVFSPDGKHIA 409
Cdd:COG2319   373 GAV---TSVAFSPDGRTLA 388
tolB PRK01029
Tol-Pal system protein TolB;
313-422 1.16e-06

Tol-Pal system protein TolB;


Pssm-ID: 234889 [Multi-domain]  Cd Length: 428  Bit Score: 50.53  E-value: 1.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983 313 SPDGSEIAFLmRDEAG----VVQLWTISPNG-GEPRQVTHTEHGVQSAFNWHPDGRSLAFVCDNS------IMLC--EAK 379
Cdd:PRK01029  239 SPRKKLLAFI-SDRYGnpdlFIQSFSLETGAiGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDgrpriyIMQIdpEGQ 317

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2309079983 380 SGELVRLTARTDSAPSadavvFSPDGKHIAYMREIDGFNQLFV 422
Cdd:PRK01029  318 SPRLLTKKYRNSSCPA-----WSPDGKKIAFCSVIKGVRQICV 355
COG4946 COG4946
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
 316-422 2.73e-06

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 49.65  E-value: 2.73e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983  316 GSEIAFLmRDEAGVVQLWTISPNGGEPRQVT-HTEHGVQSA-----------------------------------FNW- 358
Cdd:COG4946    215 GDRIYFL-SDRDGTFNLYSYDPDGKDLRQLThFKDFDVRFPstdggrivyeqggdlylldlasgeprklnitlagdFPQr 293

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983  359 ----------------HPDGRSLAFVCDNSIMLCEAKSGELVRLTARTDSApsADAVVFSPDGKHIAYMREIDGFNQLFV 422
Cdd:COG4946    294 rprwvdvsgyltsfalSPDGKRVAFEARGEVFTVPAEKGPTRNLTNTPGVR--ERLPAWSPDGKSIAYFSDASGEYELYI 371
COG4946 COG4946
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ...
 359-426 8.78e-06

Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];


Pssm-ID: 443973 [Multi-domain]  Cd Length: 1072  Bit Score: 48.11  E-value: 8.78e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2309079983  359 HPD--GRSLAFVCDNSIMLCEAKSGELVRLTAR--TDSAPsadavVFSPDGKHIAYMREIDGFNQLFVVTSA 426
Cdd:COG4946     27 YPAisGDTIVFVYAGDLWTVPADGGRARRLTSHpgYESFP-----RFSPDGKWIAFTSDYDGNTDVYVMPAE 93
DPPIV_N pfam00930
Dipeptidyl peptidase IV (DPP IV) N-terminal region; This family is an alignment of the region ...
 340-412 1.86e-04

Dipeptidyl peptidase IV (DPP IV) N-terminal region; This family is an alignment of the region to the N-terminal side of the active site. The Prosite motif does not correspond to this Pfam entry.


Pssm-ID: 395744 [Multi-domain]  Cd Length: 352  Bit Score: 43.46  E-value: 1.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2309079983 340 GEPRQVTHTEHGVQSAfNWHPDGRSLAFVCDNSIMLCEAKSGELVRLTarTDSAPS-----AD------------AVVFS 402
Cdd:pfam00930  33 NRVEPLPPGEGKIQDA-KWSPDGDRLAFVRDNNLYVRELATGKEIQIT--SDGSDGifngvADwvyeeevlgsnsAVWWS 109

                          90
                  ....*....|
gi 2309079983 403 PDGKHIAYMR 412
Cdd:pfam00930 110 PDGSRLAFLR 119
ANAPC4_WD40 pfam12894
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ...
 331-384 1.81e-03

Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,


Pssm-ID: 403945 [Multi-domain]  Cd Length: 91  Bit Score: 37.26  E-value: 1.81e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2309079983 331 QLWTISPnGGEPRQVTHtehgvqsaFNWHPDGRSLAFVC-DNSIMLCEAKSGELV 384
Cdd:pfam12894  28 RVWTLSP-DKEDLEVTS--------LAWRPDGKLLAVGYsDGTVRLLDAENGKIV 73
PD40 pfam07676
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. ...
 383-422 9.43e-03

WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].


Pssm-ID: 429587 [Multi-domain]  Cd Length: 37  Bit Score: 33.64  E-value: 9.43e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2309079983 383 LVRLTART--DSAPSadavvFSPDGKHIAYMREIDGFNQLFV 422
Cdd:pfam07676   1 LGRLTNTPgnETAPS-----WSPDGKRLAFSSDRDGKPDIYV 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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