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Conserved domains on  [gi|1738243007|emb|VAE49927|]
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Oxaloacetate decarboxylase gamma chain [Klebsiella aerogenes]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK02919 super family cl01458
oxaloacetate decarboxylase subunit gamma; Provisional
 1-82 2.39e-24

oxaloacetate decarboxylase subunit gamma; Provisional


The actual alignment was detected with superfamily member PRK02919:

Pssm-ID: 470212  Cd Length: 82  Bit Score: 87.03  E-value: 2.39e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738243007  1 MTDAVLLGEGFTLMFLGMGFVLAFLLLLIFAIRGMSLAVTRLFPEPPAAPKPAPAAVAPADDFARLKPAIVAAIHHHRRL 80
Cdd:PRK02919   1 MNNAELLGEGFTLMFLGMGFVLAFLFLLIFAIRGMSALINRFFPEPVAAPAPRPVPVAPVDDFTRLKPVIAAAIHHHRRL 80


                 ..
gi 1738243007 81 NS 82
Cdd:PRK02919  81 NA 82
 
Name Accession Description Interval E-value
PRK02919 PRK02919
oxaloacetate decarboxylase subunit gamma; Provisional
 1-82 2.39e-24

oxaloacetate decarboxylase subunit gamma; Provisional


Pssm-ID: 235086  Cd Length: 82  Bit Score: 87.03  E-value: 2.39e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738243007  1 MTDAVLLGEGFTLMFLGMGFVLAFLLLLIFAIRGMSLAVTRLFPEPPAAPKPAPAAVAPADDFARLKPAIVAAIHHHRRL 80
Cdd:PRK02919   1 MNNAELLGEGFTLMFLGMGFVLAFLFLLIFAIRGMSALINRFFPEPVAAPAPRPVPVAPVDDFTRLKPVIAAAIHHHRRL 80


                 ..
gi 1738243007 81 NS 82
Cdd:PRK02919  81 NA 82
OadG COG3630
Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, gamma subunit [Energy ...
 1-79 7.28e-11

Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, gamma subunit [Energy production and conversion];


Pssm-ID: 442848  Cd Length: 80  Bit Score: 52.64  E-value: 7.28e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738243007  1 MTDAVLLGEGFTLMFLGMGFVLAFLLLLIFAIRGMSLAVTRLF-PEPPAAPKPAPAAVAPADDFARLKPAIVAAIHHHRR 79
Cdd:COG3630    1 MTNSELLLEGLNLMLLGMGFVFVFLTLLVFAIKLMSKLINRFFpEPEPAPVATPSASAAPTADDPELVAAITAAIHHHRR 80
oadG_fam TIGR01195
sodium pump decarboxylases, gamma subunit; This model finds the subfamily of distantly related, ...
 6-80 3.14e-05

sodium pump decarboxylases, gamma subunit; This model finds the subfamily of distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.


Pssm-ID: 273493  Cd Length: 82  Bit Score: 38.19  E-value: 3.14e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1738243007  6 LLGEGFTLMFLGMGFVLAFLLLLIFAIRGMSLAVTRLF---PEPPAAPKPAPAAVAPADDFARLKPAIVAAIHHHRRL 80
Cdd:TIGR01195  3 LLLEGATLTVLGMGIVFLFLSLLIYAVRGMGKVVGRKKvpePPASAKKSKKAAVPAVQDEDEELVAAIAAAVHEHLRK 80
 
Name Accession Description Interval E-value
PRK02919 PRK02919
oxaloacetate decarboxylase subunit gamma; Provisional
 1-82 2.39e-24

oxaloacetate decarboxylase subunit gamma; Provisional


Pssm-ID: 235086  Cd Length: 82  Bit Score: 87.03  E-value: 2.39e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738243007  1 MTDAVLLGEGFTLMFLGMGFVLAFLLLLIFAIRGMSLAVTRLFPEPPAAPKPAPAAVAPADDFARLKPAIVAAIHHHRRL 80
Cdd:PRK02919   1 MNNAELLGEGFTLMFLGMGFVLAFLFLLIFAIRGMSALINRFFPEPVAAPAPRPVPVAPVDDFTRLKPVIAAAIHHHRRL 80


                 ..
gi 1738243007 81 NS 82
Cdd:PRK02919  81 NA 82
OadG COG3630
Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, gamma subunit [Energy ...
 1-79 7.28e-11

Na+-transporting oxaloacetate/methylmalonyl-CoA decarboxylase, gamma subunit [Energy production and conversion];


Pssm-ID: 442848  Cd Length: 80  Bit Score: 52.64  E-value: 7.28e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738243007  1 MTDAVLLGEGFTLMFLGMGFVLAFLLLLIFAIRGMSLAVTRLF-PEPPAAPKPAPAAVAPADDFARLKPAIVAAIHHHRR 79
Cdd:COG3630    1 MTNSELLLEGLNLMLLGMGFVFVFLTLLVFAIKLMSKLINRFFpEPEPAPVATPSASAAPTADDPELVAAITAAIHHHRR 80
oadG_fam TIGR01195
sodium pump decarboxylases, gamma subunit; This model finds the subfamily of distantly related, ...
 6-80 3.14e-05

sodium pump decarboxylases, gamma subunit; This model finds the subfamily of distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.


Pssm-ID: 273493  Cd Length: 82  Bit Score: 38.19  E-value: 3.14e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1738243007  6 LLGEGFTLMFLGMGFVLAFLLLLIFAIRGMSLAVTRLF---PEPPAAPKPAPAAVAPADDFARLKPAIVAAIHHHRRL 80
Cdd:TIGR01195  3 LLLEGATLTVLGMGIVFLFLSLLIYAVRGMGKVVGRKKvpePPASAKKSKKAAVPAVQDEDEELVAAIAAAVHEHLRK 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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