|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
15-326 |
6.22e-175 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 486.97 E-value: 6.22e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 15 KPFNFALFWDKYGTFFILAIIVAIFGTLSSEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVT 94
Cdd:PRK09699 1 KPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 95 AKLMLAGVDPFFAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVL 174
Cdd:PRK09699 81 AKLMLAGVDPFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 175 GIPVPVIFSLIVAVILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAG 254
Cdd:PRK09699 161 GIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAG 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1737173023 255 MGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRLISK 326
Cdd:PRK09699 241 MGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRLISK 312
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
12-326 |
5.13e-89 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 269.28 E-value: 5.13e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 12 AEKKPFNFALFWDKYGTFFILAIIVAIFGtLSSEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSG 91
Cdd:COG1172 5 TTTARSLLRRLLPELGLLLALVLLLVVFS-ILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 92 MVTAKLMLAGVDPFFAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAA 171
Cdd:COG1172 84 VVAALLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQG 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 172 SVLGIPVPVIFSLIVAVILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEP 251
Cdd:COG1172 164 SLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQP 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1737173023 252 LAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRLISK 326
Cdd:COG1172 244 NAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRR 318
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
60-321 |
1.70e-75 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 232.68 E-value: 1.70e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 60 SSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFFAALIGGVLVGGALGAINGCLVNWTGLHPFIITL 139
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 140 GTNAIFRGITLVISDANSVYGFSFDFVNFFA-ASVLGIPVPVIFSLIVAVILWFLTTRMRLGRNIYALGGNKNSAFYSGI 218
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFFLGgGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 219 DVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNI 298
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 1737173023 299 LQVQTYYQLVVMGGLIIAAVALD 321
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
25-321 |
3.67e-45 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 157.62 E-value: 3.67e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 25 KYGTFFILAIIVAIFGTLSSEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDP 104
Cdd:NF040906 4 QYGMLIALVAIVVLFQILTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 105 FFAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAAS------------ 172
Cdd:NF040906 84 WWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFlpdlfggtglhl 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 173 ---VLGIPVPVIF----------------------------SLIVAVILW--------------------------FLTT 195
Cdd:NF040906 164 ltlLLGVLAAAALvwsqlrgrrrrikyglevepmalfiaklVLIAAAILFftyllasyrglpnvliilgvlilvysFVTN 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 196 RMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGG 275
Cdd:NF040906 244 RTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGG 323
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1737173023 276 KGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 321
Cdd:NF040906 324 VGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFD 369
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
52-318 |
7.33e-32 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 119.67 E-value: 7.33e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 52 NITQIFVQSSVTVLIGMGEFFAILVAG-IDLSVGAILALSGMVTAKLMLAGVDPFFAALIGGVLVGGALGAINGCLVNWT 130
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYGIAGvINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 131 GLHPFIITLGTNAIFRGITL-----------VISDANSVYGFSFDFVNFFAASVlgipvpVIFSLIVAVILWFLTTRMRL 199
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALflvtgilggegGTSGITGPSGFPGAFLSFAFAFI------FLLALLLVLALWLLLYRTKF 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 200 GRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEP-LAGMGFETYAIASAIIggtsffGGKGR 278
Cdd:pfam02653 155 GRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVL------GGAGS 228
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1737173023 279 IFSVVIGGLIIGTINN-GLNILQVQTYYQLVVMGGLIIAAV 318
Cdd:pfam02653 229 PIGVVIGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
15-326 |
6.22e-175 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 486.97 E-value: 6.22e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 15 KPFNFALFWDKYGTFFILAIIVAIFGTLSSEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVT 94
Cdd:PRK09699 1 KPFNFALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 95 AKLMLAGVDPFFAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVL 174
Cdd:PRK09699 81 AKLMLAGVDPFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 175 GIPVPVIFSLIVAVILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAG 254
Cdd:PRK09699 161 GIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAG 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1737173023 255 MGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRLISK 326
Cdd:PRK09699 241 MGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRLISK 312
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
12-326 |
5.13e-89 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 269.28 E-value: 5.13e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 12 AEKKPFNFALFWDKYGTFFILAIIVAIFGtLSSEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSG 91
Cdd:COG1172 5 TTTARSLLRRLLPELGLLLALVLLLVVFS-ILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 92 MVTAKLMLAGVDPFFAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAA 171
Cdd:COG1172 84 VVAALLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQG 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 172 SVLGIPVPVIFSLIVAVILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEP 251
Cdd:COG1172 164 SLLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQP 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1737173023 252 LAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRLISK 326
Cdd:COG1172 244 NAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRR 318
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
60-321 |
1.70e-75 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 232.68 E-value: 1.70e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 60 SSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFFAALIGGVLVGGALGAINGCLVNWTGLHPFIITL 139
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 140 GTNAIFRGITLVISDANSVYGFSFDFVNFFA-ASVLGIPVPVIFSLIVAVILWFLTTRMRLGRNIYALGGNKNSAFYSGI 218
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFFLGgGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 219 DVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNI 298
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 1737173023 299 LQVQTYYQLVVMGGLIIAAVALD 321
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
12-323 |
9.49e-69 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 217.87 E-value: 9.49e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 12 AEKKPFNFALFWDKYGTFFILAIIVAIFGTLSsEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSG 91
Cdd:COG4158 16 AAARRFRLRSLLQAVGMLPVLILLCIGFELLT-PNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 92 MVTAKLMLAGvDPFFAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAA 171
Cdd:COG4158 95 VVAVLVSLLP-GLGLLGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNPDLPFAWIGNG 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 172 SVLGIPVPVIFSLIVAVILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEP 251
Cdd:COG4158 174 YLLGIPWLVVIALAVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANG 253
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1737173023 252 L-AGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRL 323
Cdd:COG4158 254 LqLGQGYELDAIAAVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRY 326
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
26-321 |
4.16e-67 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 215.36 E-value: 4.16e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 26 YGTFFILAIIVAIFGTLSSEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPF 105
Cdd:COG4214 25 LGMIIALVVIWIVFQILTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLMVNWGLPW 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 106 FAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSV--------------------------- 158
Cdd:COG4214 105 WLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIapfdptfqaigngflpdilgtlswvlg 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 159 --------------------YGFSFDFVNFFAASVL-----------------GIPVPVIFSLIVAVILWFLTTRMRLGR 201
Cdd:COG4214 185 avavaayvalqlrsrrrrrrYGLPVEPLWLFVLKLAllavlilgavyllnsyrGIPIVVLILLVLVVVYTFVLTRTVFGR 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 202 NIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFS 281
Cdd:COG4214 265 HIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFGGVGTVYG 344
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1737173023 282 VVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 321
Cdd:COG4214 345 AVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFD 384
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
11-321 |
8.61e-64 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 204.57 E-value: 8.61e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 11 MAEKKPFNFALFWDKYGTFFILAIIVAIFGTLSSEYFlTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALS 90
Cdd:PRK09512 4 TVSGRRYFTKAWLIEQKSLIALLVLIAIVSTLSPNFF-TVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALT 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 91 GMVTAKLMLAGVdPFFAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSV-YGFSFD---FV 166
Cdd:PRK09512 83 GAVAASIVGIEV-NALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPInTGFTDNadlFG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 167 NFFAASVLGIPVPVIFSLIVAVILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARL 246
Cdd:PRK09512 162 WFGIGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARL 241
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1737173023 247 GAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 321
Cdd:PRK09512 242 SSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVD 316
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
11-321 |
6.89e-59 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 192.42 E-value: 6.89e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 11 MAEKKPFNFALFWDKYGTFFILAIIVAIFGTLSSEyFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALS 90
Cdd:COG4211 1 EKKIKKKKIKNFLLNNAIYIVLLLLIIAIIIINPN-FLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 91 GMVTAKLMLA-----------GVDPFFAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISD---AN 156
Cdd:COG4211 80 AVISASLLQSgdyagkffpnlPELPIIVPILIAIAIGALFGLINGFFVAKLKVPPFIATLGTMLIVYGINSIYTDrpgAQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 157 SVYGFSFDFVNFFAASV----LGIPVPVIFSLIVAVILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISG 232
Cdd:COG4211 160 PIGGLDESFTNFAQGSIniggFGIPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYALAG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 233 VCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGG 312
Cdd:COG4211 240 ALYGFAGFLEAARTGSATNNYGNGYELDAIAACVVGGVSFSGGIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYIIKGL 319
|
....*....
gi 1737173023 313 LIIAAVALD 321
Cdd:COG4211 320 IIIAAVALD 328
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
11-323 |
3.69e-49 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 167.17 E-value: 3.69e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 11 MAEKKPFNFALFWDKYGTFFILAIIVAIFGTLSSEyFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALS 90
Cdd:PRK09478 1 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIIQDPT-FLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 91 GMVTAKLMLA-----------GVDPFFAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISD---AN 156
Cdd:PRK09478 80 AVVAATLLQSmdnankvfpelATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDfvgAS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 157 SVYGFSFDFVNF----FAASVLGIPVPVIFSLIVAVILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISG 232
Cdd:PRK09478 160 PISGFDSGFSTFaqgfVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 233 VCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGG 312
Cdd:PRK09478 240 VFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGA 319
|
330
....*....|.
gi 1737173023 313 LIIAAVALDRL 323
Cdd:PRK09478 320 IIIFAVALDSL 330
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
25-321 |
3.67e-45 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 157.62 E-value: 3.67e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 25 KYGTFFILAIIVAIFGTLSSEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDP 104
Cdd:NF040906 4 QYGMLIALVAIVVLFQILTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 105 FFAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAAS------------ 172
Cdd:NF040906 84 WWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFlpdlfggtglhl 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 173 ---VLGIPVPVIF----------------------------SLIVAVILW--------------------------FLTT 195
Cdd:NF040906 164 ltlLLGVLAAAALvwsqlrgrrrrikyglevepmalfiaklVLIAAAILFftyllasyrglpnvliilgvlilvysFVTN 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 196 RMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGG 275
Cdd:NF040906 244 RTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGG 323
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 1737173023 276 KGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 321
Cdd:NF040906 324 VGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFD 369
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
12-323 |
4.78e-45 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 156.38 E-value: 4.78e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 12 AEKKPFNFALFWDKYGTFFILAIIVAIFgTLSSEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSG 91
Cdd:PRK11285 16 PPKSRFSLWRIWDQYGMLVVFAVLFIAC-SLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 92 MVTAKLMLAgVDPFFAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAA 171
Cdd:PRK11285 95 VVTAVVINA-TESLWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGISDERFFALGYA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 172 SVLGIPVPVIFSLIVAVILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEP 251
Cdd:PRK11285 174 NFFGVPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQP 253
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1737173023 252 LAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALDRL 323
Cdd:PRK11285 254 MTSIGFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRY 325
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
52-318 |
7.33e-32 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 119.67 E-value: 7.33e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 52 NITQIFVQSSVTVLIGMGEFFAILVAG-IDLSVGAILALSGMVTAKLMLAGVDPFFAALIGGVLVGGALGAINGCLVNWT 130
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYGIAGvINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 131 GLHPFIITLGTNAIFRGITL-----------VISDANSVYGFSFDFVNFFAASVlgipvpVIFSLIVAVILWFLTTRMRL 199
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALflvtgilggegGTSGITGPSGFPGAFLSFAFAFI------FLLALLLVLALWLLLYRTKF 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 200 GRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEP-LAGMGFETYAIASAIIggtsffGGKGR 278
Cdd:pfam02653 155 GRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVL------GGAGS 228
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1737173023 279 IFSVVIGGLIIGTINN-GLNILQVQTYYQLVVMGGLIIAAV 318
Cdd:pfam02653 229 PIGVVIGSLIIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
31-321 |
1.49e-28 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 112.90 E-value: 1.49e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 31 ILAIIVAIFGTLS--SEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDpFFAA 108
Cdd:PRK15432 13 ALLAIVLLFVLLGflDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNAGYS-LPVA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 109 LIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVLGIPVPVIFSLIVAV 188
Cdd:PRK15432 92 CLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPILLGISPIGWLTLILIL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 189 ILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIG 268
Cdd:PRK15432 172 AMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACVLG 251
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1737173023 269 GTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 321
Cdd:PRK15432 252 GISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFD 304
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
32-326 |
3.40e-27 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 108.50 E-value: 3.40e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 32 LAIIVAIFGTLSSEY--FLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFFAAL 109
Cdd:PRK11618 12 IGVFVLGYLFCLVQFpgFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDYGWSPLLAF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 110 IGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVIS-DANSVYGFSFDFVNFFAASVLG---IPVPVIFSLI 185
Cdd:PRK11618 92 PLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSeESIPINHPFYDTLSSLAWKLPGggrLSAMALIMLA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 186 VAVILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASA 265
Cdd:PRK11618 172 VVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDAIAAV 251
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1737173023 266 IIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNIL-QVQTYYQLVVMGGLIIAAVALDRLISK 326
Cdd:PRK11618 252 VIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDgTLSSWWTKIVIGILLFVFIALQRGLTV 313
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
74-318 |
1.21e-25 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 104.53 E-value: 1.21e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 74 ILVAGIDLSVGAILALSGMVTAKLMLAGVdPFFAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVIS 153
Cdd:PRK15038 56 IVSGGIDISFGSTIGLCAIALGVLFQSGV-PMPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLS 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 154 DANS------VYGFSFDFVNFFAASVLGIPVPVIFSLIVAVILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVV 227
Cdd:PRK15038 135 GMAGatgyegIGGFPMAFTDFANLDVLGLPVPLIIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCAL 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 228 FIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQL 307
Cdd:PRK15038 215 YAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISS 294
|
250
....*....|.
gi 1737173023 308 VVMGGLIIAAV 318
Cdd:PRK15038 295 ALSGALLIVVV 305
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
60-318 |
2.84e-17 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 80.01 E-value: 2.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 60 SSVTVLIGMGEFFAILVAGI-DLSVGAILALSGMVTAKLMLAGVDPFFAaLIGGVLVGGALGAINGCLVNWTGLHPFIIT 138
Cdd:cd06574 1 GLIYAILALGVYIVFRILGFpDLTVDGSFPLGAAVAAILIVAGYNPWLA-LIAAILAGAAAGLVTGFLHTRLKINGLLAG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 139 LGTNAIFRGITLVISDANSVYGFSFD-----FVNFFAASVLGIPVP--VIFSLIVAVILWFLttRMRLGRNIYALGGNKN 211
Cdd:cd06574 80 ILIMIGLYSINLRIMGGPNIPLGTRDtllglLLLFGISGTLSIPVVllLIVLLVLFLVIWFL--RTKLGLAMRATGDNPD 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 212 SAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSF--FGGKGRIFSVVIGGLII 289
Cdd:cd06574 158 MARSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVgrRTIKASILGVIIGAILY 237
|
250 260
....*....|....*....|....*....
gi 1737173023 290 GTINNGLNILQVQTYYQLVVMGGLIIAAV 318
Cdd:cd06574 238 RIALALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
180-324 |
3.45e-12 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 66.30 E-value: 3.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 180 VIFSLIVAVILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTA-RLGAAEP--LAGMG 256
Cdd:COG4603 200 LLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVEVLgVQGRLTPgfSPGYG 279
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1737173023 257 FEtyAIASAIIGGTSFFGgkgrifsVVIGGLIIGTINNGLNILQVQTYYQ----LVVMGGLIIAAVALDRLI 324
Cdd:COG4603 280 FT--GIAVALLGRNNPLG-------IILAALLFGALYVGGDAMQRALGVPseivDVIQGLIILFVLAADFLI 342
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
79-315 |
1.60e-10 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 60.52 E-value: 1.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 79 IDLSVGAILALSGMVTAKLMLAGVDPFFAALIGGVLVGGALgainGCLVNWTGLHPF--------IITLGTNAIFRGITL 150
Cdd:cd06582 25 INFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALL----GVLLERLVLRPLrgaplltlLITFGGLLILLQGLL 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 151 VISDANSVYGFSFDFVNFFAASVLGIPVPVIFSLIVAVI----LWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILV 226
Cdd:cd06582 101 LIFGGDPRVPPPPLLSGSVELGGVTIPPYRLFIIAVALVllaaLYLFLRRTRLGRAIRAVAQNPEAARLLGINVRRVFAL 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 227 VFIISGVCAGLAGVVSTARLGaAEPLAGMGFETYAIASAIIGGTsffggkGRIFSVVIGGLIIGTINNGLNILQVQTYYQ 306
Cdd:cd06582 181 TFALGAALAGLAGVLLAPITG-VSPTMGLLLLLKAFAAVVLGGL------GSIPGAVVGGLLLGLAESLAAAYLSSGYKD 253
|
....*....
gi 1737173023 307 LVVMGGLII 315
Cdd:cd06582 254 AVAFVLLIL 262
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
79-315 |
2.23e-10 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 60.46 E-value: 2.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 79 IDLSVGAILALSGMVTAKLM-LAGVDPFFAALIGGVLVGGALGAINGCLVNW----TGLHPFIITLGTNAIFRGITLVI- 152
Cdd:COG0559 35 INFAHGEFVMLGAYVAYTLAtLLGLPLWLALLLAVLVAALLGVLLERLVIRPlrgaPPLALLLATIGLSLVLQGLVLLIf 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 153 -SDANSVYGFSFDFVNFFAASVLGIPVPVI-FSLIVAVILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFII 230
Cdd:COG0559 115 gADPRSFPALLSGSVELGGVSIPAYRLFIIvVALVLLAALWLFLRRTRLGLAMRAVAQNREAARLMGINVDRVIALTFAL 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 231 SGVCAGLAGVVSTARLGaAEPLAGMGFETYAIASAIIGGTsffggkGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVM 310
Cdd:COG0559 195 GAALAGLAGVLLAPIYS-VSPTMGFLLGLKAFAAVVLGGL------GSIPGAVVGGLLLGLAESLGAAYLPSGYKDVVAF 267
|
....*
gi 1737173023 311 GGLII 315
Cdd:COG0559 268 VLLIL 272
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
180-304 |
8.42e-10 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 58.22 E-value: 8.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 180 VIFSLIVAVILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAG---VVSTARLGAAEPLAGMG 256
Cdd:cd06580 98 LLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGaylVLGVQGRFTEGMSAGYG 177
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1737173023 257 FEtyAIASAIIGGTSFFGgkgrifsVVIGGLIIGTINNGLNILQVQTY 304
Cdd:cd06580 178 FI--AIAVALLGRWNPLG-------ILLAALLFGALEAGGIALQRSGG 216
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
72-318 |
8.63e-10 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 58.61 E-value: 8.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 72 FAILVAGIDLSVG----------AILALSGMVTAKLMLAGVDPFFAALIGGVLVGGALGAINGCLVNWTGLHPF-IITLG 140
Cdd:cd06581 4 YAILALGLNLLLGyagqlslghaAFFGIGAYTAALLATRLGLPFWLALLAAGLVAALVGLLLGLPALRLRGVYFaIATLA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 141 TNAIFRGITLVISDA-NSVYGFS-FDFVNFFAASVLGIPVPVIFSLIVAVILWFLT---TRMRLGRNIYALGGNKNSAFY 215
Cdd:cd06581 84 FAEIVRLLALNWSSLtGGSNGLSgIPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLrrlVRSPFGRALRAIRENEVAAEA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 216 SGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEP-LAGMGFETYAIASAIIGGTsffggkGRIFSVVIGGLIIGTINN 294
Cdd:cd06581 164 LGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPeSFGFALSIELLLMVVLGGL------GSLLGPVLGAALLVLLPE 237
|
250 260
....*....|....*....|....
gi 1737173023 295 GLNILqvQTYYQLVVMGGLIIAAV 318
Cdd:cd06581 238 LLRSL--GPGLRLLVFGLLLILVV 259
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
136-318 |
3.14e-08 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 53.93 E-value: 3.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 136 IITLGTNAIFRgitLVISDANSVYGFSFDFVNFFAASVLGIPVP-----VIFSLIVAVILWFLT---TRMRLGRNIYALG 207
Cdd:COG4177 89 IATLAFAEIVR---LLALNLESLTGGADGLSGIPRPTLFGLDLGsplafYYLVLALLVLVLLLLrrlVRSRFGRALRAIR 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 208 GNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEP-LAGMGFETYAIASAIIGGTsffggkGRIFSVVIGG 286
Cdd:COG4177 166 ENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPeSFSFLLSIEILLMVVLGGL------GSLLGPVLGA 239
|
170 180 190
....*....|....*....|....*....|..
gi 1737173023 287 LIIGTINNGLNILqvqTYYQLVVMGGLIIAAV 318
Cdd:COG4177 240 VLLVLLPELLRSL---PEYRLLIFGLLLILVV 268
|
|
| PRK10740 |
PRK10740 |
high-affinity branched-chain amino acid ABC transporter permease LivH; |
167-315 |
7.83e-03 |
|
high-affinity branched-chain amino acid ABC transporter permease LivH;
Pssm-ID: 182689 [Multi-domain] Cd Length: 308 Bit Score: 37.60 E-value: 7.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 167 NFFAASVLGIPVPV-IFSLIVAVILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTAR 245
Cdd:PRK10740 147 ENFSASITTMQAVIwIVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQF 226
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737173023 246 LGAAEPLAGMGFETYAIASAIIGGTsffggkGRIFSVVIGGLIIGtINNGLNILQVQTYYQLVVMGGLII 315
Cdd:PRK10740 227 YGVINPYIGFMAGMKAFTAAVLGGI------GSIPGAMIGGLILG-IAEALSSAYLSTEYKDVVSFALLI 289
|
|
| |
