NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1737443658|emb|VAL42487|]
View 

regulatory protein AriR [Enterobacter kobei]

Protein Classification

biofilm/acid-resistance regulator YmgB/AriR( domain architecture ID 10566727)

biofilm/acid-resistance regulator YmgB/AriR may act as a connector protein for RcsB/C regulation of biofilm and acid-resistance, providing additional signal input into the two-component signaling pathway

Gene Ontology:  GO:0003677|GO:0071468

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YmgB pfam10798
Biofilm development protein YmgB/AriR; YmgB is part of the three gene cluster ymgABC which has ...
 33-91 2.22e-19

Biofilm development protein YmgB/AriR; YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid which indicates that YmgB has an important function in acid-resistance. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole).


:

Pssm-ID: 431503  Cd Length: 59  Bit Score: 74.24  E-value: 2.22e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 1737443658 33 EESAVFSTAVRCVLASEGHLSNKAIILWLIQTLEATHDVVQADVIRKTLEIVVGYTMDD 91
Cdd:pfam10798  1 SEMEILGLIVREILASGMRVSNKAIILKLIHKLESESDVVQLDIYRNALELVVGKTPDD 59
 
Name Accession Description Interval E-value
YmgB pfam10798
Biofilm development protein YmgB/AriR; YmgB is part of the three gene cluster ymgABC which has ...
 33-91 2.22e-19

Biofilm development protein YmgB/AriR; YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid which indicates that YmgB has an important function in acid-resistance. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole).


Pssm-ID: 431503  Cd Length: 59  Bit Score: 74.24  E-value: 2.22e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 1737443658 33 EESAVFSTAVRCVLASEGHLSNKAIILWLIQTLEATHDVVQADVIRKTLEIVVGYTMDD 91
Cdd:pfam10798  1 SEMEILGLIVREILASGMRVSNKAIILKLIHKLESESDVVQLDIYRNALELVVGKTPDD 59
 
Name Accession Description Interval E-value
YmgB pfam10798
Biofilm development protein YmgB/AriR; YmgB is part of the three gene cluster ymgABC which has ...
 33-91 2.22e-19

Biofilm development protein YmgB/AriR; YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid which indicates that YmgB has an important function in acid-resistance. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole).


Pssm-ID: 431503  Cd Length: 59  Bit Score: 74.24  E-value: 2.22e-19
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 1737443658 33 EESAVFSTAVRCVLASEGHLSNKAIILWLIQTLEATHDVVQADVIRKTLEIVVGYTMDD 91
Cdd:pfam10798  1 SEMEILGLIVREILASGMRVSNKAIILKLIHKLESESDVVQLDIYRNALELVVGKTPDD 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH