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Conserved domains on  [gi|1738841260|emb|VAS50030|]
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putative transcriptional regulator [Klebsiella quasipneumoniae]

Protein Classification

helix-turn-helix domain-containing protein( domain architecture ID 366238)

helix-turn-helix (HTH) domain-containing protein with an XRE (Xenobiotic Response Element) family; HTH domain binds DNA and may function as a transcriptional regulator

Gene Ontology:  GO:0003677|GO:0006355

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NadS super family cl49308
NadS family protein;
5-59 2.24e-06

NadS family protein;


The actual alignment was detected with superfamily member NF041265:

Pssm-ID: 469165  Cd Length: 94  Bit Score: 40.54  E-value: 2.24e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1738841260  5 LFADLLASAEEMVRIEKGQQMPkeQHVHSFSEIDVKAIREATGLKQQDFAAAVGV 59
Cdd:NF041265   3 FFDELKASLEEAVEIKNGVKAP--ARVTRYEVADVKAIRAQLNVSQAEMAKALGT 55
 
Name Accession Description Interval E-value
NadS NF041265
NadS family protein;
5-59 2.24e-06

NadS family protein;


Pssm-ID: 469165  Cd Length: 94  Bit Score: 40.54  E-value: 2.24e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1738841260  5 LFADLLASAEEMVRIEKGQQMPkeQHVHSFSEIDVKAIREATGLKQQDFAAAVGV 59
Cdd:NF041265   3 FFDELKASLEEAVEIKNGVKAP--ARVTRYEVADVKAIRAQLNVSQAEMAKALGT 55
YiaG COG2944
DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];
32-59 2.10e-05

DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];


Pssm-ID: 442187 [Multi-domain]  Cd Length: 64  Bit Score: 37.61  E-value: 2.10e-05
                         10        20
                 ....*....|....*....|....*...
gi 1738841260 32 HSFSEIDVKAIREATGLKQQDFAAAVGV 59
Cdd:COG2944    4 KPLTPEEIRALRERLGLSQAEFAALLGV 31
PRK10072 PRK10072
HTH-type transcriptional regulator;
2-59 2.92e-05

HTH-type transcriptional regulator;


Pssm-ID: 182222  Cd Length: 96  Bit Score: 37.85  E-value: 2.92e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1738841260  2 KDELFaDLLASAEEMVRIEKGQQMPKEQHVHSFSEIdvKAIREATGLKQQDFAAAVGV 59
Cdd:PRK10072   4 KDPMF-ELLSSLEQIVFKDETQKITLTQKTTSFTEF--EQLRKGTGLKIDDFARVLGV 58
 
Name Accession Description Interval E-value
NadS NF041265
NadS family protein;
5-59 2.24e-06

NadS family protein;


Pssm-ID: 469165  Cd Length: 94  Bit Score: 40.54  E-value: 2.24e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 1738841260  5 LFADLLASAEEMVRIEKGQQMPkeQHVHSFSEIDVKAIREATGLKQQDFAAAVGV 59
Cdd:NF041265   3 FFDELKASLEEAVEIKNGVKAP--ARVTRYEVADVKAIRAQLNVSQAEMAKALGT 55
YiaG COG2944
DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];
32-59 2.10e-05

DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];


Pssm-ID: 442187 [Multi-domain]  Cd Length: 64  Bit Score: 37.61  E-value: 2.10e-05
                         10        20
                 ....*....|....*....|....*...
gi 1738841260 32 HSFSEIDVKAIREATGLKQQDFAAAVGV 59
Cdd:COG2944    4 KPLTPEEIRALRERLGLSQAEFAALLGV 31
PRK10072 PRK10072
HTH-type transcriptional regulator;
2-59 2.92e-05

HTH-type transcriptional regulator;


Pssm-ID: 182222  Cd Length: 96  Bit Score: 37.85  E-value: 2.92e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 1738841260  2 KDELFaDLLASAEEMVRIEKGQQMPKEQHVHSFSEIdvKAIREATGLKQQDFAAAVGV 59
Cdd:PRK10072   4 KDPMF-ELLSSLEQIVFKDETQKITLTQKTTSFTEF--EQLRKGTGLKIDDFARVLGV 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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