|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09350 |
PRK09350 |
elongation factor P--(R)-beta-lysine ligase; |
12-317 |
0e+00 |
|
elongation factor P--(R)-beta-lysine ligase;
Pssm-ID: 236474 [Multi-domain] Cd Length: 306 Bit Score: 648.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 12 PIPNLLKRAAVMAEIRRFFTDRGVLEVETPCMSQATVTDIHLFPFETRFVGPGHSQGLNLYLMTSPEYHMKRLLAAGCGP 91
Cdd:PRK09350 1 SIPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 92 VFQLCRSFRNEEMGRHHNPEFTMLEWYRPCYDMYRLINEVDDLLQQVLECQPAESLSYQQAFQRHLEIDPLSADKAQLRE 171
Cdd:PRK09350 81 IFQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCEPAESLSYQQAFLRYLGIDPLSADKTQLRE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 172 VAAKLDLSNIADTEEDRDTLLQLLFTMGVEPHIGKDRPTFIYHFPATQASLAQISPEDHRVAERFEVYYKGIELANGFHE 251
Cdd:PRK09350 161 VAAKLGLSNIADEEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQAALAKISTEDHRVAERFEVYFKGIELANGFHE 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1738963691 252 LTDAHEQRLRFEQDNRKRAARGLPQQPIDNNLLAALEAGLPDCSGVALGVDRVVMLALGAESIGEV 317
Cdd:PRK09350 241 LTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALEAGLPDCSGVALGVDRLIMLALGAESISEV 306
|
|
| EpmA |
COG2269 |
Elongation factor P--beta-lysine ligase (EF-P beta-lysylation pathway) [Translation, ribosomal ... |
11-319 |
0e+00 |
|
Elongation factor P--beta-lysine ligase (EF-P beta-lysylation pathway) [Translation, ribosomal structure and biogenesis];
Pssm-ID: 441870 [Multi-domain] Cd Length: 309 Bit Score: 557.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 11 APIPNLLKRAAVMAEIRRFFTDRGVLEVETPCMSQATVTDIHLFPFETRFVGPGhSQGLNLYLMTSPEYHMKRLLAAGCG 90
Cdd:COG2269 1 ASREALRARARLLAAIRAFFAERGVLEVETPALSVAPGTDPHLDSFATEFIGPD-GGGRPLYLHTSPEFAMKRLLAAGSG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 91 PVFQLCRSFRNEEMGRHHNPEFTMLEWYRPCYDMYRLINEVDDLLQQVLEC---QPAESLSYQQAFQRHLEIDPLSADKA 167
Cdd:COG2269 80 PIYQIAKVFRNGERGRRHNPEFTMLEWYRPGFDYEALMDEVEALLQLVLGAagfAPAERLSYQEAFLRYLGIDPLTADLD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 168 QLREVAAKLDLSniADTEEDRDTLLQLLFTMGVEPHIGKDRPTFIYHFPATQASLAQISPEDHRVAERFEVYYKGIELAN 247
Cdd:COG2269 160 ELAAAAAAAGLR--VADDDDRDDLLDLLLSERVEPQLGRDRPTFLYDYPASQAALARISPDDPRVAERFELYACGVELAN 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1738963691 248 GFHELTDAHEQRLRFEQDNRKRAARGLPQQPIDNNLLAALEAGLPDCSGVALGVDRVVMLALGAESIGEVIA 319
Cdd:COG2269 238 GFHELTDAAEQRRRFEADNAERERLGLPPYPIDERFLAALAAGLPDCSGVALGFDRLLMLALGAERIDDVLA 309
|
|
| genX |
TIGR00462 |
EF-P lysine aminoacylase GenX; Many Gram-negative bacteria have a protein closely homologous ... |
29-319 |
5.23e-180 |
|
EF-P lysine aminoacylase GenX; Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. [Unknown function, General]
Pssm-ID: 273090 [Multi-domain] Cd Length: 290 Bit Score: 498.61 E-value: 5.23e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 29 FFTDRGVLEVETPCMSQATVTDIHLFPFETRFVGPGhSQGLNLYLMTSPEYHMKRLLAAGCGPVFQLCRSFRNEEMGRHH 108
Cdd:TIGR00462 1 FFAERGVLEVETPLLSPAPVTDPHLDAFATEFVGPD-GQGRPLYLQTSPEYAMKRLLAAGSGPIFQICKVFRNGERGRRH 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 109 NPEFTMLEWYRPCYDMYRLINEVDDLLQQVLE--CQPAESLSYQQAFQRHLEIDPLSADKAQLREVAAKLDLsnIADTEE 186
Cdd:TIGR00462 80 NPEFTMLEWYRPGFDYHDLMDEVEALLQELLGdpFAPAERLSYQEAFLRYAGIDPLTASLAELQAAAAAHGI--RASEED 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 187 DRDTLLQLLFTMGVEPHIGKDRPTFIYHFPATQASLAQISPEDHRVAERFEVYYKGIELANGFHELTDAHEQRLRFEQDN 266
Cdd:TIGR00462 158 DRDDLLDLLFSEKVEPHLGFGRPTFLYDYPASQAALARISPDDPRVAERFELYIKGLELANGFHELTDAAEQRRRFEADN 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1738963691 267 RKRAARGLPQQPIDNNLLAALEAGLPDCSGVALGVDRVVMLALGAESIGEVIA 319
Cdd:TIGR00462 238 ALRKALGLPRYPLDERFLAALEAGLPECSGVALGVDRLLMLALGADSIDDVLA 290
|
|
| LysRS_core |
cd00775 |
Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a ... |
16-320 |
2.52e-67 |
|
Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Pssm-ID: 238398 [Multi-domain] Cd Length: 329 Bit Score: 213.99 E-value: 2.52e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 16 LLKRAAVMAEIRRFFTDRGVLEVETPCMSQ----ATVTdihlfPFETrfvgpgHSQGL--NLYLMTSPEYHMKRLLAAGC 89
Cdd:cd00775 8 FIVRSKIISYIRKFLDDRGFLEVETPMLQPiaggAAAR-----PFIT------HHNALdmDLYLRIAPELYLKRLIVGGF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 90 GPVFQLCRSFRNEEMGRHHNPEFTMLEWYRPCYDMYRLINEVDDLLQQVLE-----------------CQPAESLSYQQA 152
Cdd:cd00775 77 ERVYEIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKkingktkieyggkeldfTPPFKRVTMVDA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 153 FQRHLEIDPLSADKAQLREVAAKLDLSnIADTEEDRDTLLQLL---FTMGVEPHIGKdrPTFIYHFPATQASLAQISPED 229
Cdd:cd00775 157 LKEKTGIDFPELDLEQPEELAKLLAKL-IKEKIEKPRTLGKLLdklFEEFVEPTLIQ--PTFIIDHPVEISPLAKRHRSN 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 230 HRVAERFEVYYKGIELANGFHELTDAHEQRLRFEQDNRKRAARGLPQQPIDNNLLAALEAGLPDCSGVALGVDRVVMLAL 309
Cdd:cd00775 234 PGLTERFELFICGKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDEDFVTALEYGMPPTGGLGIGIDRLVMLLT 313
|
330
....*....|.
gi 1738963691 310 GAESIGEVIAF 320
Cdd:cd00775 314 DSNSIRDVILF 324
|
|
| tRNA-synt_2 |
pfam00152 |
tRNA synthetases class II (D, K and N); |
15-320 |
1.29e-51 |
|
tRNA synthetases class II (D, K and N);
Pssm-ID: 425487 [Multi-domain] Cd Length: 318 Bit Score: 173.14 E-value: 1.29e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 15 NLLKRAAVMAEIRRFFTDRGVLEVETPCMSQATVtdihlfPFETR-FVGPGHSQGLNLYLMTSPEYHMKRLLAAGCGPVF 93
Cdd:pfam00152 21 NLKLRSKIIKAIRNFLDENGFLEVETPILTKSAT------PEGARdFLVPSRALGKFYALPQSPQLYKQLLMVAGFDRVF 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 94 QLCRSFRNEEMGRHHNPEFTMLEWYRPCYDMYRLINEVDDLLQQVLEcqpaESLSYQQAFQRHLEID-PLSADKAQLREV 172
Cdd:pfam00152 95 QIARCFRDEDLRTDRQPEFTQLDLEMSFVDYEDVMDLTEELIKEIFK----EVEGIAKELEGGTLLDlKKPFPRITYAEA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 173 AAKLDLSNIADTEEDRDTlLQLLFTMGVEPHIGKDRPTFIYHFPATQASLAQISPED-HRVAERFEVYYKGIELANGFHE 251
Cdd:pfam00152 171 IEKLNGKDVEELGYGSDK-PDLRFLLELVIDKNKFNPLWVTDFPAEHHPFTMPKDEDdPALAEAFDLVLNGVEIGGGSIR 249
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1738963691 252 LTDAHEQRLRFEQDNRKRAArglpQQPIDNNLLAALEAGLPDCSGVALGVDRVVMLALGAESIGEVIAF 320
Cdd:pfam00152 250 IHDPELQEERFEEQGLDPEE----AEEKFGFYLDALKYGAPPHGGLGIGLDRLVMLLTGLESIREVIAF 314
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09350 |
PRK09350 |
elongation factor P--(R)-beta-lysine ligase; |
12-317 |
0e+00 |
|
elongation factor P--(R)-beta-lysine ligase;
Pssm-ID: 236474 [Multi-domain] Cd Length: 306 Bit Score: 648.53 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 12 PIPNLLKRAAVMAEIRRFFTDRGVLEVETPCMSQATVTDIHLFPFETRFVGPGHSQGLNLYLMTSPEYHMKRLLAAGCGP 91
Cdd:PRK09350 1 SIPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 92 VFQLCRSFRNEEMGRHHNPEFTMLEWYRPCYDMYRLINEVDDLLQQVLECQPAESLSYQQAFQRHLEIDPLSADKAQLRE 171
Cdd:PRK09350 81 IFQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCEPAESLSYQQAFLRYLGIDPLSADKTQLRE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 172 VAAKLDLSNIADTEEDRDTLLQLLFTMGVEPHIGKDRPTFIYHFPATQASLAQISPEDHRVAERFEVYYKGIELANGFHE 251
Cdd:PRK09350 161 VAAKLGLSNIADEEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQAALAKISTEDHRVAERFEVYFKGIELANGFHE 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1738963691 252 LTDAHEQRLRFEQDNRKRAARGLPQQPIDNNLLAALEAGLPDCSGVALGVDRVVMLALGAESIGEV 317
Cdd:PRK09350 241 LTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALEAGLPDCSGVALGVDRLIMLALGAESISEV 306
|
|
| EpmA |
COG2269 |
Elongation factor P--beta-lysine ligase (EF-P beta-lysylation pathway) [Translation, ribosomal ... |
11-319 |
0e+00 |
|
Elongation factor P--beta-lysine ligase (EF-P beta-lysylation pathway) [Translation, ribosomal structure and biogenesis];
Pssm-ID: 441870 [Multi-domain] Cd Length: 309 Bit Score: 557.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 11 APIPNLLKRAAVMAEIRRFFTDRGVLEVETPCMSQATVTDIHLFPFETRFVGPGhSQGLNLYLMTSPEYHMKRLLAAGCG 90
Cdd:COG2269 1 ASREALRARARLLAAIRAFFAERGVLEVETPALSVAPGTDPHLDSFATEFIGPD-GGGRPLYLHTSPEFAMKRLLAAGSG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 91 PVFQLCRSFRNEEMGRHHNPEFTMLEWYRPCYDMYRLINEVDDLLQQVLEC---QPAESLSYQQAFQRHLEIDPLSADKA 167
Cdd:COG2269 80 PIYQIAKVFRNGERGRRHNPEFTMLEWYRPGFDYEALMDEVEALLQLVLGAagfAPAERLSYQEAFLRYLGIDPLTADLD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 168 QLREVAAKLDLSniADTEEDRDTLLQLLFTMGVEPHIGKDRPTFIYHFPATQASLAQISPEDHRVAERFEVYYKGIELAN 247
Cdd:COG2269 160 ELAAAAAAAGLR--VADDDDRDDLLDLLLSERVEPQLGRDRPTFLYDYPASQAALARISPDDPRVAERFELYACGVELAN 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1738963691 248 GFHELTDAHEQRLRFEQDNRKRAARGLPQQPIDNNLLAALEAGLPDCSGVALGVDRVVMLALGAESIGEVIA 319
Cdd:COG2269 238 GFHELTDAAEQRRRFEADNAERERLGLPPYPIDERFLAALAAGLPDCSGVALGFDRLLMLALGAERIDDVLA 309
|
|
| genX |
TIGR00462 |
EF-P lysine aminoacylase GenX; Many Gram-negative bacteria have a protein closely homologous ... |
29-319 |
5.23e-180 |
|
EF-P lysine aminoacylase GenX; Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. [Unknown function, General]
Pssm-ID: 273090 [Multi-domain] Cd Length: 290 Bit Score: 498.61 E-value: 5.23e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 29 FFTDRGVLEVETPCMSQATVTDIHLFPFETRFVGPGhSQGLNLYLMTSPEYHMKRLLAAGCGPVFQLCRSFRNEEMGRHH 108
Cdd:TIGR00462 1 FFAERGVLEVETPLLSPAPVTDPHLDAFATEFVGPD-GQGRPLYLQTSPEYAMKRLLAAGSGPIFQICKVFRNGERGRRH 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 109 NPEFTMLEWYRPCYDMYRLINEVDDLLQQVLE--CQPAESLSYQQAFQRHLEIDPLSADKAQLREVAAKLDLsnIADTEE 186
Cdd:TIGR00462 80 NPEFTMLEWYRPGFDYHDLMDEVEALLQELLGdpFAPAERLSYQEAFLRYAGIDPLTASLAELQAAAAAHGI--RASEED 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 187 DRDTLLQLLFTMGVEPHIGKDRPTFIYHFPATQASLAQISPEDHRVAERFEVYYKGIELANGFHELTDAHEQRLRFEQDN 266
Cdd:TIGR00462 158 DRDDLLDLLFSEKVEPHLGFGRPTFLYDYPASQAALARISPDDPRVAERFELYIKGLELANGFHELTDAAEQRRRFEADN 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1738963691 267 RKRAARGLPQQPIDNNLLAALEAGLPDCSGVALGVDRVVMLALGAESIGEVIA 319
Cdd:TIGR00462 238 ALRKALGLPRYPLDERFLAALEAGLPECSGVALGVDRLLMLALGADSIDDVLA 290
|
|
| LysRS_core |
cd00775 |
Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a ... |
16-320 |
2.52e-67 |
|
Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Pssm-ID: 238398 [Multi-domain] Cd Length: 329 Bit Score: 213.99 E-value: 2.52e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 16 LLKRAAVMAEIRRFFTDRGVLEVETPCMSQ----ATVTdihlfPFETrfvgpgHSQGL--NLYLMTSPEYHMKRLLAAGC 89
Cdd:cd00775 8 FIVRSKIISYIRKFLDDRGFLEVETPMLQPiaggAAAR-----PFIT------HHNALdmDLYLRIAPELYLKRLIVGGF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 90 GPVFQLCRSFRNEEMGRHHNPEFTMLEWYRPCYDMYRLINEVDDLLQQVLE-----------------CQPAESLSYQQA 152
Cdd:cd00775 77 ERVYEIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKkingktkieyggkeldfTPPFKRVTMVDA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 153 FQRHLEIDPLSADKAQLREVAAKLDLSnIADTEEDRDTLLQLL---FTMGVEPHIGKdrPTFIYHFPATQASLAQISPED 229
Cdd:cd00775 157 LKEKTGIDFPELDLEQPEELAKLLAKL-IKEKIEKPRTLGKLLdklFEEFVEPTLIQ--PTFIIDHPVEISPLAKRHRSN 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 230 HRVAERFEVYYKGIELANGFHELTDAHEQRLRFEQDNRKRAARGLPQQPIDNNLLAALEAGLPDCSGVALGVDRVVMLAL 309
Cdd:cd00775 234 PGLTERFELFICGKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDEDFVTALEYGMPPTGGLGIGIDRLVMLLT 313
|
330
....*....|.
gi 1738963691 310 GAESIGEVIAF 320
Cdd:cd00775 314 DSNSIRDVILF 324
|
|
| LysU |
COG1190 |
Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]; Lysyl-tRNA ... |
16-320 |
1.57e-65 |
|
Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]; Lysyl-tRNA synthetase (class II) is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 440803 [Multi-domain] Cd Length: 495 Bit Score: 214.13 E-value: 1.57e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 16 LLKRAAVMAEIRRFFTDRGVLEVETPcMSQ-----ATVTdihlfPFETrfvgpgHSQGLN--LYLMTSPEYHMKRLLAAG 88
Cdd:COG1190 174 FRKRSKIIRAIRRFLDERGFLEVETP-MLQpiaggAAAR-----PFIT------HHNALDmdLYLRIAPELYLKRLIVGG 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 89 CGPVFQLCRSFRNEEMGRHHNPEFTMLEWYRPCYDMYRLINEVDDLLQQV---------LECQ--------PAESLSYQQ 151
Cdd:COG1190 242 FERVFEIGRNFRNEGIDTTHNPEFTMLELYQAYADYNDMMDLTEELIREAaeavlgttkVTYQgqeidlspPWRRITMVE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 152 AFQRHLEIDPLS-ADKAQLREVAAKLDLSniADTEEDRDTLLQLLFTMGVEPHIgkDRPTFIYHFPATQASLAQISPEDH 230
Cdd:COG1190 322 AIKEATGIDVTPlTDDEELRALAKELGIE--VDPGWGRGKLIDELFEELVEPKL--IQPTFVTDYPVEVSPLAKRHRDDP 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 231 RVAERFEVYYKGIELANGFHELTDAHEQRLRFEQDNRKRAARGLPQQPIDNNLLAALEAGLPDCSGVALGVDRVVMLALG 310
Cdd:COG1190 398 GLTERFELFIAGREIANAFSELNDPIDQRERFEEQLELKAAGDDEAMPMDEDFLRALEYGMPPTGGLGIGIDRLVMLLTD 477
|
330
....*....|
gi 1738963691 311 AESIGEVIAF 320
Cdd:COG1190 478 SPSIRDVILF 487
|
|
| lysS |
PRK00484 |
lysyl-tRNA synthetase; Reviewed |
17-320 |
2.57e-64 |
|
lysyl-tRNA synthetase; Reviewed
Pssm-ID: 234778 [Multi-domain] Cd Length: 491 Bit Score: 210.72 E-value: 2.57e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 17 LKRAAVMAEIRRFFTDRGVLEVETPcMSQ-----ATVTdihlfPFETrfvgpgHSQGLN--LYLMTSPEYHMKRLLAAGC 89
Cdd:PRK00484 173 RKRSKIISAIRRFLDNRGFLEVETP-MLQpiaggAAAR-----PFIT------HHNALDidLYLRIAPELYLKRLIVGGF 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 90 GPVFQLCRSFRNEEMGRHHNPEFTMLEWYRPCYDMYRLINEVDDLLQQVLE-----------------CQPAESLSYQQA 152
Cdd:PRK00484 241 ERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQavlgttkvtyqgteidfGPPFKRLTMVDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 153 FQRHLEIDPLSADKAQLREVAAKLDLSniADTEEDRDTLLQLLFTMGVEPHIgkDRPTFIYHFPATQASLAQISPEDHRV 232
Cdd:PRK00484 321 IKEYTGVDFDDMTDEEARALAKELGIE--VEKSWGLGKLINELFEEFVEPKL--IQPTFITDYPVEISPLAKRHREDPGL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 233 AERFEVYYKGIELANGFHELTDAHEQRLRFEQDNRKRAARGLPQQPIDNNLLAALEAGLPDCSGVALGVDRVVMLALGAE 312
Cdd:PRK00484 397 TERFELFIGGREIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRALEYGMPPTGGLGIGIDRLVMLLTDSP 476
|
....*...
gi 1738963691 313 SIGEVIAF 320
Cdd:PRK00484 477 SIRDVILF 484
|
|
| lysS_bact |
TIGR00499 |
lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial; This model represents the ... |
16-320 |
1.10e-60 |
|
lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial; This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273107 [Multi-domain] Cd Length: 493 Bit Score: 201.44 E-value: 1.10e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 16 LLKRAAVMAEIRRFFTDRGVLEVETPCMsQATVTDIHLFPFETrfvgpgHSQGL--NLYLMTSPEYHMKRLLAAGCGPVF 93
Cdd:TIGR00499 172 FLKRSKIIKAIRRFLDDRGFIEVETPML-QSIPGGANAKPFIT------HHNALdmDLYLRIAPELYLKRLIVGGLEKVY 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 94 QLCRSFRNEEMGRHHNPEFTMLEWYRPCYDMYRLINEVDDLLQQVLEC-----------------QPAESLSYQQAFQRH 156
Cdd:TIGR00499 245 EIGRVFRNEGVDTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAKEllgtfiinyndleidlkPPWKRITMVDALEMV 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 157 LEIDPLSADKAQLREVAAKLDLSNIADTEEDRDTLLQLLFTMGVEPHIGKdrPTFIYHFPATQASLAQISPEDHRVAERF 236
Cdd:TIGR00499 325 TGIDFDILKDDETAKALAKEHGIEVAEDSLTLGHILNKFFEQFLEHTLIQ--PTFITHYPAEISPLAKRDPSNPEFTERF 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 237 EVYYKGIELANGFHELTDAHEQRLRFEQDNRKRAARGLPQQPIDNNLLAALEAGLPDCSGVALGVDRVVMLALGAESIGE 316
Cdd:TIGR00499 403 ELFIAGKEIANAYSELNDPLDQRERFEQQLAEKEAGDDEAQLVDEDFVEALEYGMPPTGGLGIGIDRLVMLLTDAPSIRD 482
|
....
gi 1738963691 317 VIAF 320
Cdd:TIGR00499 483 VLLF 486
|
|
| tRNA-synt_2 |
pfam00152 |
tRNA synthetases class II (D, K and N); |
15-320 |
1.29e-51 |
|
tRNA synthetases class II (D, K and N);
Pssm-ID: 425487 [Multi-domain] Cd Length: 318 Bit Score: 173.14 E-value: 1.29e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 15 NLLKRAAVMAEIRRFFTDRGVLEVETPCMSQATVtdihlfPFETR-FVGPGHSQGLNLYLMTSPEYHMKRLLAAGCGPVF 93
Cdd:pfam00152 21 NLKLRSKIIKAIRNFLDENGFLEVETPILTKSAT------PEGARdFLVPSRALGKFYALPQSPQLYKQLLMVAGFDRVF 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 94 QLCRSFRNEEMGRHHNPEFTMLEWYRPCYDMYRLINEVDDLLQQVLEcqpaESLSYQQAFQRHLEID-PLSADKAQLREV 172
Cdd:pfam00152 95 QIARCFRDEDLRTDRQPEFTQLDLEMSFVDYEDVMDLTEELIKEIFK----EVEGIAKELEGGTLLDlKKPFPRITYAEA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 173 AAKLDLSNIADTEEDRDTlLQLLFTMGVEPHIGKDRPTFIYHFPATQASLAQISPED-HRVAERFEVYYKGIELANGFHE 251
Cdd:pfam00152 171 IEKLNGKDVEELGYGSDK-PDLRFLLELVIDKNKFNPLWVTDFPAEHHPFTMPKDEDdPALAEAFDLVLNGVEIGGGSIR 249
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1738963691 252 LTDAHEQRLRFEQDNRKRAArglpQQPIDNNLLAALEAGLPDCSGVALGVDRVVMLALGAESIGEVIAF 320
Cdd:pfam00152 250 IHDPELQEERFEEQGLDPEE----AEEKFGFYLDALKYGAPPHGGLGIGLDRLVMLLTGLESIREVIAF 314
|
|
| PLN02502 |
PLN02502 |
lysyl-tRNA synthetase |
18-320 |
4.37e-50 |
|
lysyl-tRNA synthetase
Pssm-ID: 215278 [Multi-domain] Cd Length: 553 Bit Score: 174.79 E-value: 4.37e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 18 KRAAVMAEIRRFFTDRGVLEVETPCM-SQATVTDIHlfPFETRfvgpgH-SQGLNLYLMTSPEYHMKRLLAAGCGPVFQL 95
Cdd:PLN02502 231 TRAKIISYIRRFLDDRGFLEVETPMLnMIAGGAAAR--PFVTH-----HnDLNMDLYLRIATELHLKRLVVGGFERVYEI 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 96 CRSFRNEEMGRHHNPEFTMLEWYRPCYDMYRLINEVDDLLQQ-VLECQPAESLSYQQafqrhLEID---PLS-ADKAQLR 170
Cdd:PLN02502 304 GRQFRNEGISTRHNPEFTTCEFYQAYADYNDMMELTEEMVSGmVKELTGSYKIKYHG-----IEIDftpPFRrISMISLV 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 171 EVAAKLDLSNIADTEEDRDT--------------------LLQLLFTMGVEPHIGKdrPTFIYHFPATQASLAQispeDH 230
Cdd:PLN02502 379 EEATGIDFPADLKSDEANAYliaacekfdvkcpppqttgrLLNELFEEFLEETLVQ--PTFVLDHPVEMSPLAK----PH 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 231 R----VAERFEVYYKGIELANGFHELTDAHEQRLRFEQDNRKRAARGLPQQPIDNNLLAALEAGLPDCSGVALGVDRVVM 306
Cdd:PLN02502 453 RskpgLTERFELFINGRELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGLPPTGGWGLGIDRLVM 532
|
330
....*....|....
gi 1738963691 307 LALGAESIGEVIAF 320
Cdd:PLN02502 533 LLTDSASIRDVIAF 546
|
|
| lysS |
PRK02983 |
bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX; |
15-320 |
3.46e-45 |
|
bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX;
Pssm-ID: 235095 [Multi-domain] Cd Length: 1094 Bit Score: 164.75 E-value: 3.46e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 15 NLLKRAAVMAEIRRFFTDRGVLEVETPCMSQatvtdIH----LFPFETRFvgpgHSQGLNLYLMTSPEYHMKRLLAAGCG 90
Cdd:PRK02983 769 LLRARSAVVRAVRETLVARGFLEVETPILQQ-----VHgganARPFVTHI----NAYDMDLYLRIAPELYLKRLCVGGVE 839
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 91 PVFQLCRSFRNEEMGRHHNPEFTMLEWYRPC--YDMYR-----LINEV---------------DDLLQQVLECQPAESLS 148
Cdd:PRK02983 840 RVFELGRNFRNEGVDATHNPEFTLLEAYQAHadYDTMRdltreLIQNAaqaahgapvvmrpdgDGVLEPVDISGPWPVVT 919
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 149 YQQAFQRHL--EIDPlSADKAQLREVAAKLDLSniADTEEDRDTLLQLLFTMGVEPHIgkDRPTFIYHFPATQASLAQIS 226
Cdd:PRK02983 920 VHDAVSEALgeEIDP-DTPLAELRKLCDAAGIP--YRTDWDAGAVVLELYEHLVEDRT--TFPTFYTDFPTSVSPLTRPH 994
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 227 PEDHRVAERFEVYYKGIELANGFHELTDAHEQRLRFEQDNRKrAARGLPQ-QPIDNNLLAALEAGLPDCSGVALGVDRVV 305
Cdd:PRK02983 995 RSDPGLAERWDLVAWGVELGTAYSELTDPVEQRRRLTEQSLL-AAGGDPEaMELDEDFLQALEYAMPPTGGLGMGVDRLV 1073
|
330
....*....|....*
gi 1738963691 306 MLALGAeSIGEVIAF 320
Cdd:PRK02983 1074 MLLTGR-SIRETLPF 1087
|
|
| Asp_Lys_Asn_RS_core |
cd00669 |
Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of ... |
19-325 |
1.79e-40 |
|
Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Pssm-ID: 238358 [Multi-domain] Cd Length: 269 Bit Score: 142.62 E-value: 1.79e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 19 RAAVMAEIRRFFTDRGVLEVETPcMSQATVTDIHLFPFETRFVGPGHsqglNLYLMTSPEYHMKRLLAAGCGPVFQLCRS 98
Cdd:cd00669 4 RSKIIKAIRDFMDDRGFLEVETP-MLQKITGGAGARPFLVKYNALGL----DYYLRISPQLFKKRLMVGGLDRVFEINRN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 99 FRNEEMGRHHNPEFTMLEWYRPCYDMYRLI--NE--VDDLLQQVLEcqpaeslSYQQAFQRHLEIDPLSADKAQLREVAA 174
Cdd:cd00669 79 FRNEDLRARHQPEFTMMDLEMAFADYEDVIelTErlVRHLAREVLG-------VTAVTYGFELEDFGLPFPRLTYREALE 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 175 KLdlsniadteedrdtllqllftmgvephigkDRPTFIYHFPATQAS-LAQISPEDHRVAERFEVYYKGIELANGFHELT 253
Cdd:cd00669 152 RY------------------------------GQPLFLTDYPAEMHSpLASPHDVNPEIADAFDLFINGVEVGNGSSRLH 201
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1738963691 254 DAHEQRLRFEQDNRKRAArglpQQPIDNNLLAALEAGLPDCSGVALGVDRVVMLALGAESIGEVIAFTVDRA 325
Cdd:cd00669 202 DPDIQAEVFQEQGINKEA----GMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIAFPKMRR 269
|
|
| PRK12445 |
PRK12445 |
lysyl-tRNA synthetase; Reviewed |
19-324 |
2.42e-40 |
|
lysyl-tRNA synthetase; Reviewed
Pssm-ID: 171504 [Multi-domain] Cd Length: 505 Bit Score: 147.52 E-value: 2.42e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 19 RAAVMAEIRRFFTDRGVLEVETPCMsQATVTDIHLFPFETRFvgpgHSQGLNLYLMTSPEYHMKRLLAAGCGPVFQLCRS 98
Cdd:PRK12445 187 RSKILAAIRQFMVARGFMEVETPMM-QVIPGGASARPFITHH----NALDLDMYLRIAPELYLKRLVVGGFERVFEINRN 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 99 FRNEEMGRHHNPEFTMLEWYRPCYDMYRLINEVDDLL----QQVLEC-------------QPAESLSYQQAFQRH----- 156
Cdd:PRK12445 262 FRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFrtlaQEVLGTtkvtygehvfdfgKPFEKLTMREAIKKYrpetd 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 157 -LEIDPLSADKAQLREVAAKLDLSniadteEDRDTLLQLLFTMGVEPHIgkDRPTFIYHFPATQASLAQISPEDHRVAER 235
Cdd:PRK12445 342 mADLDNFDAAKALAESIGITVEKS------WGLGRIVTEIFDEVAEAHL--IQPTFITEYPAEVSPLARRNDVNPEITDR 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 236 FEVYYKGIELANGFHELTDAHEQRLRFEQDNRKRAARGLPQQPIDNNLLAALEAGLPDCSGVALGVDRVVMLALGAESIG 315
Cdd:PRK12445 414 FEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIR 493
|
....*....
gi 1738963691 316 EVIAFTVDR 324
Cdd:PRK12445 494 DVILFPAMR 502
|
|
| PTZ00385 |
PTZ00385 |
lysyl-tRNA synthetase; Provisional |
13-324 |
7.97e-36 |
|
lysyl-tRNA synthetase; Provisional
Pssm-ID: 185588 [Multi-domain] Cd Length: 659 Bit Score: 136.70 E-value: 7.97e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 13 IPNLLKRAAVMAEIRRFFTDRGVLEVETPCMsQATVTDIHLFPFETRFvgpgHSQGLNLYLMTSPEYHMKRLLAAGCGPV 92
Cdd:PTZ00385 230 IETIKKRHVMLQALRDYFNERNFVEVETPVL-HTVASGANAKSFVTHH----NANAMDLFLRVAPELHLKQCIVGGMERI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 93 FQLCRSFRNEEMGRHHNPEFTMLEWYRPCYDMYRLINEVDDLLQQ---------VLECQPAES---------------LS 148
Cdd:PTZ00385 305 YEIGKVFRNEDADRSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQlamrvngttVVQIYPENAhgnpvtvdlgkpfrrVS 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 149 YQQAFQRH--LEIDP---LSADK--AQLREVAAKLD--LSNIADTEEDRDTLLQLLFTMGVEphigkdRPTFIYHFPATQ 219
Cdd:PTZ00385 385 VYDEIQRMsgVEFPPpneLNTPKgiAYMSVVMLRYNipLPPVRTAAKMFEKLIDFFITDRVV------EPTFVMDHPLFM 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 220 ASLAQISPEDHRVAERFEVYYKGIELANGFHELTDAHEQRLRFEQDNRKRAARGLPQQPIDNNLLAALEAGLPDCSGVAL 299
Cdd:PTZ00385 459 SPLAKEQVSRPGLAERFELFVNGIEYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDETFLKSLQVGLPPTAGWGM 538
|
330 340
....*....|....*....|....*
gi 1738963691 300 GVDRVVMLALGAESIGEVIAFTVDR 324
Cdd:PTZ00385 539 GIDRALMLLTNSSNIRDGIIFPLLR 563
|
|
| PTZ00417 |
PTZ00417 |
lysine-tRNA ligase; Provisional |
16-324 |
2.13e-30 |
|
lysine-tRNA ligase; Provisional
Pssm-ID: 173607 [Multi-domain] Cd Length: 585 Bit Score: 120.89 E-value: 2.13e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 16 LLKRAAVMAEIRRFFTDRGVLEVETPCMSqATVTDIHLFPFETRFvgpgHSQGLNLYLMTSPEYHMKRLLAAGCGPVFQL 95
Cdd:PTZ00417 253 FITRTKIINYLRNFLNDRGFIEVETPTMN-LVAGGANARPFITHH----NDLDLDLYLRIATELPLKMLIVGGIDKVYEI 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 96 CRSFRNEEMGRHHNPEFTMLEWYRPCYDMYRLINEVDDLLQQ-VLECQPAESLSYQQAFQrhlEIDPLSAD------KAQ 168
Cdd:PTZ00417 328 GKVFRNEGIDNTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQlVMHLFGTYKILYNKDGP---EKDPIEIDftppypKVS 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 169 LREVAAKLD---LSNIADTEEDRDTLLQLLFTMGVE----PHIGK---------------DRPTFIYHFPATQASLAQIS 226
Cdd:PTZ00417 405 IVEELEKLTntkLEQPFDSPETINKMINLIKENKIEmpnpPTAAKlldqlashfienkypNKPFFIIEHPQIMSPLAKYH 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 227 PEDHRVAERFEVYYKGIELANGFHELTDAHEQRLRFEQDNRKRAARGLPQQPIDNNLLAALEAGLPDCSGVALGVDRVVM 306
Cdd:PTZ00417 485 RSKPGLTERLEMFICGKEVLNAYTELNDPFKQKECFSAQQKDREKGDAEAFQFDAAFCTSLEYGLPPTGGLGLGIDRITM 564
|
330
....*....|....*...
gi 1738963691 307 LALGAESIGEVIAFTVDR 324
Cdd:PTZ00417 565 FLTNKNCIKDVILFPTMR 582
|
|
| AspRS_core |
cd00777 |
Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its ... |
16-320 |
1.11e-15 |
|
Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Pssm-ID: 238400 [Multi-domain] Cd Length: 280 Bit Score: 75.69 E-value: 1.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 16 LLKRAAVMAEIRRFFTDRGVLEVETPCMSQATvtdihlfPFETR-FVGPGHSQGLNLY-LMTSPEYHMKRLLAAGCGPVF 93
Cdd:cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKST-------PEGARdFLVPSRLHPGKFYaLPQSPQLFKQLLMVSGFDRYF 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 94 QLCRSFRNEEMGRHHNPEFTMLEWYRPCYDMYRLINEVDDLLQQVLE-------CQPAESLSYQQAFQR-----HLEID- 160
Cdd:cd00777 74 QIARCFRDEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKevlgvelTTPFPRMTYAEAMERygfkfLWIVDf 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 161 PLSADkaqlrevaakldlsniaDTEEDRDTLLQLLFTMgvePHiGKDRPTFiyhfpatqaslaQISPEDHRvAERFEVYY 240
Cdd:cd00777 154 PLFEW-----------------DEEEGRLVSAHHPFTA---PK-EEDLDLL------------EKDPEDAR-AQAYDLVL 199
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 241 KGIELANGFHELTDAHEQRLRFEQdnrkraaRGLPQQPIDNN---LLAALEAGLPDCSGVALGVDRVVMLALGAESIGEV 317
Cdd:cd00777 200 NGVELGGGSIRIHDPDIQEKVFEI-------LGLSEEEAEEKfgfLLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDV 272
|
...
gi 1738963691 318 IAF 320
Cdd:cd00777 273 IAF 275
|
|
| PRK12820 |
PRK12820 |
bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; ... |
15-325 |
1.23e-10 |
|
bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Pssm-ID: 105955 [Multi-domain] Cd Length: 706 Bit Score: 62.31 E-value: 1.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 15 NLLKRAAVMAEIRRFFTDRGVLEVETPCMSQATvtdihlfPFETR-FVGPGHSQGLNLY-LMTSPEYHMKRLLAAGCGPV 92
Cdd:PRK12820 155 HLAKRHRIIKCARDFLDSRGFLEIETPILTKST-------PEGARdYLVPSRIHPKEFYaLPQSPQLFKQLLMIAGFERY 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 93 FQLCRSFRNEEMGRHHNPEFTMLEWYRPCYDMYRLINEVDDLLQQVLEC------QPAESLSY----------------- 149
Cdd:PRK12820 228 FQLARCFRDEDLRPNRQPEFTQLDIEASFIDEEFIFELIEELTARMFAIggialpRPFPRMPYaeamdttgsdrpdlrfd 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 150 ------------------QQAFQRHLEI---------DPLSADKAQ------------------LREVAAKLDlSNIAD- 183
Cdd:PRK12820 308 lkfadatdifentrygifKQILQRGGRIkginikgqsEKLSKNVLQneyakeiapsfgakgmtwMRAEAGGLD-SNIVQf 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 184 -TEEDRDTLLQL-------LFTMGVEP--------------HIGkDR----------PTFIYHFPATQASLAQISPEDHR 231
Cdd:PRK12820 387 fSADEKEALKRRfhaedgdVIIMIADAscaivlsalgqlrlHLA-DRlglipegvfhPLWITDFPLFEATDDGGVTSSHH 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 232 V---------------------AERFEVYYKGIELANGFHELTDAHEQRLRFeqdnrkrAARGLPQQPIDNN---LLAAL 287
Cdd:PRK12820 466 PftapdredfdpgdieelldlrSRAYDLVVNGEELGGGSIRINDKDIQLRIF-------AALGLSEEDIEDKfgfFLRAF 538
|
410 420 430
....*....|....*....|....*....|....*...
gi 1738963691 288 EAGLPDCSGVALGVDRVVMLALGAESIGEVIAFTVDRA 325
Cdd:PRK12820 539 DFAAPPHGGIALGLDRVVSMILQTPSIREVIAFPKNRS 576
|
|
| PLN02903 |
PLN02903 |
aminoacyl-tRNA ligase |
15-181 |
4.06e-09 |
|
aminoacyl-tRNA ligase
Pssm-ID: 215490 [Multi-domain] Cd Length: 652 Bit Score: 57.49 E-value: 4.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 15 NLLKRAAVMAEIRRFFTDR-GVLEVETPCMSQATVTDIHLFPFETRfVGPGhsqglNLY-LMTSPEYHMKRLLAAGCGPV 92
Cdd:PLN02903 202 NLRLRHRVVKLIRRYLEDVhGFVEIETPILSRSTPEGARDYLVPSR-VQPG-----TFYaLPQSPQLFKQMLMVSGFDRY 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 93 FQLCRSFRNEEMGRHHNPEFTMLEW---YRPCYDMYRLiNEvdDLLQQVLE-------CQPAESLSYQQAFQRHleidpl 162
Cdd:PLN02903 276 YQIARCFRDEDLRADRQPEFTQLDMelaFTPLEDMLKL-NE--DLIRQVFKeikgvqlPNPFPRLTYAEAMSKY------ 346
|
170
....*....|....*....
gi 1738963691 163 SADKAQLREVAAKLDLSNI 181
Cdd:PLN02903 347 GSDKPDLRYGLELVDVSDV 365
|
|
| class_II_aaRS-like_core |
cd00768 |
Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA ... |
19-209 |
7.35e-09 |
|
Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Pssm-ID: 238391 [Multi-domain] Cd Length: 211 Bit Score: 55.20 E-value: 7.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 19 RAAVMAEIRRFFTDRGVLEVETPCMSQATV--TDIHLFPfetRFVGPGHSQGLNLYLMTSPEYHMKRLLAAGCGP----V 92
Cdd:cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLleKAGHEPK---DLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKlplrL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 93 FQLCRSFRNEEMGRH--HNPEFTMLEWYRPC------YDMYRLINEVDDLLQQ--------VLECQPAESLSYQQAFQRH 156
Cdd:cd00768 79 AEIGPAFRNEGGRRGlrRVREFTQLEGEVFGedgeeaSEFEELIELTEELLRAlgikldivFVEKTPGEFSPGGAGPGFE 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1738963691 157 LEIDPLSADKAQLREVAAKLDLSNIADTEEDRDTLLQLLFTMGVEPHIGKDRP 209
Cdd:cd00768 159 IEVDHPEGRGLEIGSGGYRQDEQARAADLYFLDEALEYRYPPTIGFGLGLERL 211
|
|
| aspS |
PRK00476 |
aspartyl-tRNA synthetase; Validated |
283-320 |
3.11e-07 |
|
aspartyl-tRNA synthetase; Validated
Pssm-ID: 234775 [Multi-domain] Cd Length: 588 Bit Score: 51.61 E-value: 3.11e-07
10 20 30
....*....|....*....|....*....|....*...
gi 1738963691 283 LLAALEAGLPDCSGVALGVDRVVMLALGAESIGEVIAF 320
Cdd:PRK00476 518 LLDALKYGAPPHGGIAFGLDRLVMLLAGADSIRDVIAF 555
|
|
| AspS |
COG0173 |
Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Aspartyl-tRNA ... |
283-320 |
3.80e-07 |
|
Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Aspartyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439943 [Multi-domain] Cd Length: 589 Bit Score: 51.54 E-value: 3.80e-07
10 20 30
....*....|....*....|....*....|....*...
gi 1738963691 283 LLAALEAGLPDCSGVALGVDRVVMLALGAESIGEVIAF 320
Cdd:COG0173 517 LLEAFKYGAPPHGGIAFGLDRLVMLLAGEDSIRDVIAF 554
|
|
| PRK06462 |
PRK06462 |
asparagine synthetase A; Reviewed |
26-320 |
3.73e-05 |
|
asparagine synthetase A; Reviewed
Pssm-ID: 235808 [Multi-domain] Cd Length: 335 Bit Score: 45.01 E-value: 3.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 26 IRRFFTDRGVLEVETPCMSQATVTDIHLFPFETRFVGPGHSQGLNLYLMTSPEYHmKRLLAAGCGPVFQLCRSFRNEE-- 103
Cdd:PRK06462 40 TREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYLADSMILH-KQLALRMLGKIFYLSPNFRLEPvd 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 104 --MGRHHNpEFTMLEW---YRPCYDMYRLINE-VDDLLQQVLECQPAESLSYQQ---AFQRHLEIDPLS-ADKAQLREVA 173
Cdd:PRK06462 119 kdTGRHLY-EFTQLDIeieGADLDEVMDLIEDlIKYLVKELLEEHEDELEFFGRdlpHLKRPFKRITHKeAVEILNEEGC 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1738963691 174 AKLDLSNIADTEEdrdTLLQLLFtmgvephigkDRPTFIYHFPATQASLAQ-ISPEDHRVAERFEVYYkgielANGFHEL 252
Cdd:PRK06462 198 RGIDLEELGSEGE---KSLSEHF----------EEPFWIIDIPKGSREFYDrEDPERPGVLRNYDLLL-----PEGYGEA 259
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1738963691 253 TDAHEQRLRFEQDNRKRAARGLPQQPIDnNLLAALEAGLPDCSGVALGVDRVVMLALGAESIGEVIAF 320
Cdd:PRK06462 260 VSGGEREYEYEEIVERIREHGVDPEKYK-WYLEMAKEGPLPSAGFGIGVERLTRYICGLRHIREVQPF 326
|
|
| aspS |
PRK00476 |
aspartyl-tRNA synthetase; Validated |
15-47 |
1.10e-04 |
|
aspartyl-tRNA synthetase; Validated
Pssm-ID: 234775 [Multi-domain] Cd Length: 588 Bit Score: 43.90 E-value: 1.10e-04
10 20 30
....*....|....*....|....*....|...
gi 1738963691 15 NLLKRAAVMAEIRRFFTDRGVLEVETPCMSQAT 47
Cdd:PRK00476 140 NLKLRSKVTSAIRNFLDDNGFLEIETPILTKST 172
|
|
| AspS |
COG0173 |
Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Aspartyl-tRNA ... |
15-41 |
2.05e-04 |
|
Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Aspartyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439943 [Multi-domain] Cd Length: 589 Bit Score: 43.06 E-value: 2.05e-04
10 20
....*....|....*....|....*..
gi 1738963691 15 NLLKRAAVMAEIRRFFTDRGVLEVETP 41
Cdd:COG0173 141 NLILRHKVTKAIRNYLDENGFLEIETP 167
|
|
|