|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09802 |
PRK09802 |
DeoR family transcriptional regulator; |
1-269 |
0e+00 |
|
DeoR family transcriptional regulator;
Pssm-ID: 182086 [Multi-domain] Cd Length: 269 Bit Score: 525.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 1 MSSTDSSAEKRITGTSERREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGIAVRAYGGALICEGNVPGVEP 80
Cdd:PRK09802 1 MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 81 SVEDKSSLNTAVKRSIAKVAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLR 160
Cdd:PRK09802 81 SVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 161 RQSQSFYGDQAEQSLQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRI 240
Cdd:PRK09802 161 RQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRI 240
|
250 260
....*....|....*....|....*....
gi 1737607504 241 DMIIVDEGIPAESLDGLRKSGIDVVLVKG 269
Cdd:PRK09802 241 DMIIVDEGIPADSLEGLRKAGVEVILVGE 269
|
|
| AgaR |
NF040755 |
transcriptional repressor AgaR; |
12-267 |
0e+00 |
|
transcriptional repressor AgaR;
Pssm-ID: 468715 [Multi-domain] Cd Length: 256 Bit Score: 521.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 12 ITGTSERREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGIAVRAYGGALICEGNVPGVEPSVEDKSSLNTA 91
Cdd:NF040755 1 MKGTSERREQIIQRLRQQGSVQVEDLSALFGVSTVTIRNDLAFLEKQGIAVRAYGGALINDGFIPGAEPSVEDKSRLNTA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 92 VKRSIAKVAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQA 171
Cdd:NF040755 81 VKRLIAAAAAELIKPGDRVILDSGTTTYEIARHLKQHQDVVVMTNGLNVANELLEAEGVEVLMTGGHLRRQSLSFYGDQA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 172 EQSLQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPA 251
Cdd:NF040755 161 EQSLQNYHFDKLFLGVDGFDLERGITTHNEDEARLNRRMCEVAERIIAVTDSSKFGRSSLHKIRDTGRIDTLITDSGIPE 240
|
250
....*....|....*.
gi 1737607504 252 ESLDGLRKSGIDVVLV 267
Cdd:NF040755 241 EYLQGLRKLGVEVILV 256
|
|
| GlpR |
COG1349 |
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ... |
15-268 |
3.28e-107 |
|
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];
Pssm-ID: 440960 [Multi-domain] Cd Length: 254 Bit Score: 310.53 E-value: 3.28e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 15 TSERREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGIAVRAYGGALICEGnvPGVEPSVEDKSSLNTAVKR 94
Cdd:COG1349 3 AEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAVLVSS--AAAEPPFAERETLNAEEKR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 95 SIAKVAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQS 174
Cdd:COG1349 81 AIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAERPNIEVILLGGELRPSSGSLVGPLAEEA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 175 LQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPAESL 254
Cdd:COG1349 161 LRRFRADKAFLGASGIDAEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPELL 240
|
250
....*....|....
gi 1737607504 255 DGLRKSGIDVVLVK 268
Cdd:COG1349 241 EALEEAGVEVIVAE 254
|
|
| DeoRC |
pfam00455 |
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ... |
88-247 |
4.02e-71 |
|
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395365 Cd Length: 160 Bit Score: 215.45 E-value: 4.02e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 88 LNTAVKRSIAKVAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFY 167
Cdd:pfam00455 1 ENAEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLNIANELSEKPDIEVILLGGEVRPKTGAFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 168 GDQAEQSLQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDE 247
Cdd:pfam00455 81 GPLAEEFLRQFNVDKAFIGANGIDLEGGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITDK 160
|
|
| HTH_DEOR |
smart00420 |
helix_turn_helix, Deoxyribose operon repressor; |
18-68 |
3.52e-14 |
|
helix_turn_helix, Deoxyribose operon repressor;
Pssm-ID: 197714 [Multi-domain] Cd Length: 53 Bit Score: 65.32 E-value: 3.52e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1737607504 18 RREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGIAVRAYGGA 68
Cdd:smart00420 1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGA 51
|
|
| CasRa_I-A |
cd09655 |
CRISPR/Cas system-associated transcriptional regulator CasRa; CRISPR (Clustered Regularly ... |
14-60 |
1.22e-03 |
|
CRISPR/Cas system-associated transcriptional regulator CasRa; CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Predicted transcriptional regulator of CRISPR/Cas system
Pssm-ID: 187786 [Multi-domain] Cd Length: 198 Bit Score: 38.90 E-value: 1.22e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1737607504 14 GTSERREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGI 60
Cdd:cd09655 136 GLSREELKILEVLKAKGEKSVKNIAKKLGKSLSTISRHLRELEKKGL 182
|
|
| cas_HTH |
TIGR01884 |
CRISPR locus-related DNA-binding protein; Most but not all examples of this family are ... |
14-60 |
1.88e-03 |
|
CRISPR locus-related DNA-binding protein; Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity. [Regulatory functions, DNA interactions, , ]
Pssm-ID: 273852 [Multi-domain] Cd Length: 203 Bit Score: 38.49 E-value: 1.88e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1737607504 14 GTSERREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGI 60
Cdd:TIGR01884 140 GLSREELKILEVLKATGEKSVKNIAKKLGKSLSTISRHLAELEKKGL 186
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09802 |
PRK09802 |
DeoR family transcriptional regulator; |
1-269 |
0e+00 |
|
DeoR family transcriptional regulator;
Pssm-ID: 182086 [Multi-domain] Cd Length: 269 Bit Score: 525.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 1 MSSTDSSAEKRITGTSERREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGIAVRAYGGALICEGNVPGVEP 80
Cdd:PRK09802 1 MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 81 SVEDKSSLNTAVKRSIAKVAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLR 160
Cdd:PRK09802 81 SVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 161 RQSQSFYGDQAEQSLQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRI 240
Cdd:PRK09802 161 RQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRI 240
|
250 260
....*....|....*....|....*....
gi 1737607504 241 DMIIVDEGIPAESLDGLRKSGIDVVLVKG 269
Cdd:PRK09802 241 DMIIVDEGIPADSLEGLRKAGVEVILVGE 269
|
|
| AgaR |
NF040755 |
transcriptional repressor AgaR; |
12-267 |
0e+00 |
|
transcriptional repressor AgaR;
Pssm-ID: 468715 [Multi-domain] Cd Length: 256 Bit Score: 521.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 12 ITGTSERREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGIAVRAYGGALICEGNVPGVEPSVEDKSSLNTA 91
Cdd:NF040755 1 MKGTSERREQIIQRLRQQGSVQVEDLSALFGVSTVTIRNDLAFLEKQGIAVRAYGGALINDGFIPGAEPSVEDKSRLNTA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 92 VKRSIAKVAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQA 171
Cdd:NF040755 81 VKRLIAAAAAELIKPGDRVILDSGTTTYEIARHLKQHQDVVVMTNGLNVANELLEAEGVEVLMTGGHLRRQSLSFYGDQA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 172 EQSLQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPA 251
Cdd:NF040755 161 EQSLQNYHFDKLFLGVDGFDLERGITTHNEDEARLNRRMCEVAERIIAVTDSSKFGRSSLHKIRDTGRIDTLITDSGIPE 240
|
250
....*....|....*.
gi 1737607504 252 ESLDGLRKSGIDVVLV 267
Cdd:NF040755 241 EYLQGLRKLGVEVILV 256
|
|
| GlpR |
COG1349 |
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ... |
15-268 |
3.28e-107 |
|
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];
Pssm-ID: 440960 [Multi-domain] Cd Length: 254 Bit Score: 310.53 E-value: 3.28e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 15 TSERREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGIAVRAYGGALICEGnvPGVEPSVEDKSSLNTAVKR 94
Cdd:COG1349 3 AEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAELEEQGLLRRVHGGAVLVSS--AAAEPPFAERETLNAEEKR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 95 SIAKVAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQS 174
Cdd:COG1349 81 AIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAERPNIEVILLGGELRPSSGSLVGPLAEEA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 175 LQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPAESL 254
Cdd:COG1349 161 LRRFRADKAFLGASGIDAEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAGPPPELL 240
|
250
....*....|....
gi 1737607504 255 DGLRKSGIDVVLVK 268
Cdd:COG1349 241 EALEEAGVEVIVAE 254
|
|
| DeoRC |
pfam00455 |
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ... |
88-247 |
4.02e-71 |
|
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Pssm-ID: 395365 Cd Length: 160 Bit Score: 215.45 E-value: 4.02e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 88 LNTAVKRSIAKVAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFY 167
Cdd:pfam00455 1 ENAEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLNIANELSEKPDIEVILLGGEVRPKTGAFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 168 GDQAEQSLQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDE 247
Cdd:pfam00455 81 GPLAEEFLRQFNVDKAFIGANGIDLEGGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITDK 160
|
|
| srlR |
PRK10434 |
DNA-binding transcriptional repressor; |
17-267 |
1.48e-69 |
|
DNA-binding transcriptional repressor;
Pssm-ID: 182457 [Multi-domain] Cd Length: 256 Bit Score: 214.94 E-value: 1.48e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 17 ERREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGIAVRAYGGALIcegNVPGVEPSVEDKSSLNTAVKRSI 96
Cdd:PRK10434 5 QRQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVL---NKEESDPPIDHKTLINTHKKELI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 97 AKVAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEG-VELLMTGGHLRRQSQSFYGDQAEQSL 175
Cdd:PRK10434 82 AEAAVSLIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNALSELDNeQTILMPGGTFRKKSASFHGQLAENAF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 176 QNYHFDLLFLGVDAIDLDRGVSTHNEdEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPAESLD 255
Cdd:PRK10434 162 EHFTFDKLFIGTDGIDLNAGVTTFNE-VYTVSKAMCNAAREIILMADSSKFGRKSPNVVCSLEKVDKLITDAGIDPAFRQ 240
|
250
....*....|..
gi 1737607504 256 GLRKSGIDVVLV 267
Cdd:PRK10434 241 ALEEKGIEVIIT 252
|
|
| PRK10906 |
PRK10906 |
DeoR/GlpR family transcriptional regulator; |
16-251 |
5.10e-28 |
|
DeoR/GlpR family transcriptional regulator;
Pssm-ID: 182827 [Multi-domain] Cd Length: 252 Bit Score: 107.64 E-value: 5.10e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 16 SERREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGIAVRAYGGALICEGNVpgvEPSVEDKSSLNTAVKRS 95
Cdd:PRK10906 4 TQRHDAIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILRHHGGAALPSSSV---NTPWHDRKATQTEEKER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 96 IAKVAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSL 175
Cdd:PRK10906 81 IARKVASQIPNGATLFIDIGTTPEAVAHALLNHSNLRIVTNNLNVANTLMAKEDFRIILAGGELRSRDGGIIGEATLDFI 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1737607504 176 QNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPA 251
Cdd:PRK10906 161 SQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTDQLPPA 236
|
|
| PRK13509 |
PRK13509 |
HTH-type transcriptional regulator UlaR; |
16-267 |
2.49e-22 |
|
HTH-type transcriptional regulator UlaR;
Pssm-ID: 184100 [Multi-domain] Cd Length: 251 Bit Score: 92.38 E-value: 2.49e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 16 SERREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGIAVRAYGGALICEGNVPGVEPSVEDKSSlNTAVKRS 95
Cdd:PRK13509 4 AQRHQILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLKKVRNGAEAITQQRPRWTPMNIHQAQ-NHDEKVR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 96 IAKVAAELVKPGHRIILDSGTTTFEIARMLrQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRqSQSFYGDQAEQSL 175
Cdd:PRK13509 83 IAKAASQLCNPGESVVINCGSTAFLLGREL-CGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNK-SQSITLSPQGSEN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 176 QNYHFDLLFLGVDAIDLDrGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPAESLD 255
Cdd:PRK13509 161 SLYAGHWMFTSGKGLTAD-GLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNADPEVLQ 239
|
250
....*....|..
gi 1737607504 256 GLRKSGIDVVLV 267
Cdd:PRK13509 240 QLEAQGVSILLV 251
|
|
| PRK10411 |
PRK10411 |
L-fucose operon activator; |
16-254 |
8.10e-19 |
|
L-fucose operon activator;
Pssm-ID: 236684 [Multi-domain] Cd Length: 240 Bit Score: 82.93 E-value: 8.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 16 SERREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGIAVRAYGGA-LICEGNVPGVEP-SVEDKSSLntAVK 93
Cdd:PRK10411 3 AARQQAIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKILRNHGRAkYIHRQNQDSGDPfHIRLKSHY--AHK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 94 RSIAKVAAELVKPGHRIILDSGTTTFEIARMLrQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQ 173
Cdd:PRK10411 81 ADIAREALAWIEEGMVIALDASSTCWYLARQL-PDINIQVFTNSHPICQELGKRERIQLISSGGTLERKYGCYVNPSLIS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 174 SLQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPAES 253
Cdd:PRK10411 160 QLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEARIGHLDEVTHIISDERQVATS 239
|
.
gi 1737607504 254 L 254
Cdd:PRK10411 240 L 240
|
|
| HTH_DeoR |
pfam08220 |
DeoR-like helix-turn-helix domain; |
18-72 |
2.46e-15 |
|
DeoR-like helix-turn-helix domain;
Pssm-ID: 285436 [Multi-domain] Cd Length: 57 Bit Score: 68.44 E-value: 2.46e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1737607504 18 RREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGIAVRAYGGALICE 72
Cdd:pfam08220 1 RIQQILELLKQQGTLSVEELAELLGVSEMTIRRDLNELEEQGLLTRTHGGAVSNS 55
|
|
| PRK10681 |
PRK10681 |
DNA-binding transcriptional repressor DeoR; Provisional |
17-246 |
7.78e-15 |
|
DNA-binding transcriptional repressor DeoR; Provisional
Pssm-ID: 182644 [Multi-domain] Cd Length: 252 Bit Score: 72.04 E-value: 7.78e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 17 ERREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDlafLEKQGIAVRAYGGALICegnvpgvEPS------VEDKSSLNT 90
Cdd:PRK10681 7 ERIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRD---LNAHSAPVVLLGGYIVL-------EPRsashylLSDQKSRLV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1737607504 91 AVKRSIAKVAAELVKPGHRIILDSGTTTFEIARMLRQHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQ 170
Cdd:PRK10681 77 EEKRRAAQLAATLVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCYSLNTFLALQEKPHCRAILCGGEFHASNAIFKPLD 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1737607504 171 AEQSLQNYHFDLLFLGVDAIDLDRGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVD 246
Cdd:PRK10681 157 FQQTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGKVRPARMGDLTRFDTVVSD 232
|
|
| HTH_DEOR |
smart00420 |
helix_turn_helix, Deoxyribose operon repressor; |
18-68 |
3.52e-14 |
|
helix_turn_helix, Deoxyribose operon repressor;
Pssm-ID: 197714 [Multi-domain] Cd Length: 53 Bit Score: 65.32 E-value: 3.52e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1737607504 18 RREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGIAVRAYGGA 68
Cdd:smart00420 1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVHGGA 51
|
|
| YobV |
COG2378 |
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ... |
15-67 |
3.06e-04 |
|
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];
Pssm-ID: 441945 [Multi-domain] Cd Length: 314 Bit Score: 41.60 E-value: 3.06e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1737607504 15 TSERREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGIAVRAYGG 67
Cdd:COG2378 3 RLERLLALLQLLQSRRGVTAAELAERLEVSERTIYRDIDALRELGVPIEAERG 55
|
|
| HTH_11 |
pfam08279 |
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins. |
20-64 |
3.77e-04 |
|
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.
Pssm-ID: 429896 [Multi-domain] Cd Length: 52 Bit Score: 37.41 E-value: 3.77e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1737607504 20 EQIIQRLR-AQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGIAVRA 64
Cdd:pfam08279 1 LQILQLLLeARGPISGQELAEKLGVSRRTIRRDIKILEELGVPIEA 46
|
|
| CasRa_I-A |
cd09655 |
CRISPR/Cas system-associated transcriptional regulator CasRa; CRISPR (Clustered Regularly ... |
14-60 |
1.22e-03 |
|
CRISPR/Cas system-associated transcriptional regulator CasRa; CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Predicted transcriptional regulator of CRISPR/Cas system
Pssm-ID: 187786 [Multi-domain] Cd Length: 198 Bit Score: 38.90 E-value: 1.22e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1737607504 14 GTSERREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGI 60
Cdd:cd09655 136 GLSREELKILEVLKAKGEKSVKNIAKKLGKSLSTISRHLRELEKKGL 182
|
|
| COG2345 |
COG2345 |
Predicted transcriptional regulator, ArsR family [Transcription]; |
1-65 |
1.79e-03 |
|
Predicted transcriptional regulator, ArsR family [Transcription];
Pssm-ID: 441914 [Multi-domain] Cd Length: 217 Bit Score: 38.75 E-value: 1.79e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1737607504 1 MSSTDSSAekriTGTSERREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGIAVRAY 65
Cdd:COG2345 1 MTDTPALA----ALADPTRRRILELLKRAGPVTAAELAEALGLTPNAVRRHLDALEEEGLVERET 61
|
|
| cas_HTH |
TIGR01884 |
CRISPR locus-related DNA-binding protein; Most but not all examples of this family are ... |
14-60 |
1.88e-03 |
|
CRISPR locus-related DNA-binding protein; Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity. [Regulatory functions, DNA interactions, , ]
Pssm-ID: 273852 [Multi-domain] Cd Length: 203 Bit Score: 38.49 E-value: 1.88e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1737607504 14 GTSERREQIIQRLRAQGSVQVNDLSHLYGVSTVTIRNDLAFLEKQGI 60
Cdd:TIGR01884 140 GLSREELKILEVLKATGEKSVKNIAKKLGKSLSTISRHLAELEKKGL 186
|
|
| |
