|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
2-425 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 743.38 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 2 AFESLTDKLQNVFKKLKGKGRLTEADVKVALKEVKMALLEADVNFKVVKQFTKSVQEKAIGQDVMNGLNPGQMVIKIVND 81
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 82 ELVNLMGSETTELPIKPGmDLTVLMMVGLQGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVF 161
Cdd:COG0541 81 ELVELLGGENEELNLAKK-PPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 162 SMGDKQNPVDIAKAAIEHAKSNQQNVVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDAMTGQDAVNVAQNFSDKV 241
Cdd:COG0541 160 PEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 242 GIDGVILTKMDGDTRGGAALSIKAVTGKPIFYVGMGEKLSDLEQFYPERMASRILGMGDVMSLIEKVEASVDQEQAQEMQ 321
Cdd:COG0541 240 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 322 KKLKKMDFDFNDYLTSMEQMNKMGGISSILNMLPGMgGKMKDIEGM-IDEKAMDRTKSIILSMTPQERSNPNILNISRKN 400
Cdd:COG0541 320 KKLKKGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGM-GKLKQLKDLdIDEKELKRIEAIINSMTPEERRNPDIINGSRKR 398
|
410 420
....*....|....*....|....*
gi 1567206637 401 RIARGAGVDITEVNRLVKQFEQSKK 425
Cdd:COG0541 399 RIAKGSGTTVQDVNRLLKQFEQMKK 423
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
3-429 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 608.13 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 3 FESLTDKLQNVFKKLKGKGRLTEADVKVALKEVKMALLEADVNFKVVKQFTKSVQEKAIGQDVMNGLNPGQMVIKIVNDE 82
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 83 LVNLMGSETTELPIKPGMDlTVLMMVGLQGAGKTTTVAKLAGKLKSK-GKKPLLVACDVYRPAAITQLQVNGEKQGVEVF 161
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPP-TVILMVGLQGSGKTTTCGKLAYYLKKKqGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 162 SMGDKQNPVDIAKAAIEHAKSNQQNVVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDAMTGQDAVNVAQNFSDKV 241
Cdd:TIGR00959 160 ALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 242 GIDGVILTKMDGDTRGGAALSIKAVTGKPIFYVGMGEKLSDLEQFYPERMASRILGMGDVMSLIEKVEASVDQEQAQEMQ 321
Cdd:TIGR00959 240 GLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 322 KKLKKMDFDFNDYLTSMEQMNKMGGISSILNMLPGMGGKMKDIEGM-IDEKAMDRTKSIILSMTPQERSNPNILNISRKN 400
Cdd:TIGR00959 320 EKMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDAdLDEKQFKRIEAIISSMTPEERRNPKILNPSRRK 399
|
410 420
....*....|....*....|....*....
gi 1567206637 401 RIARGAGVDITEVNRLVKQFEQSKKMMKQ 429
Cdd:TIGR00959 400 RIAAGSGTTVQDVNKLIKRFEQMKKMMKK 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
6-442 |
2.98e-174 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 495.11 E-value: 2.98e-174
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 6 LTDKLQNVFKKLKGKGRLTEADVKVALKEVKMALLEADVNFKVVKQFTKSVQEKAIGQDVMNGLNPGQMVIKIVNDELVN 85
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 86 LMGSET--TELPIKPgmdlTVLMMVGLQGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSM 163
Cdd:PRK00771 81 LLGEETepLVLPLKP----QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGD 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 164 GDKQNPVDIAKAAIEHAKSNqqNVVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDAMTGQDAVNVAQNFSDKVGI 243
Cdd:PRK00771 157 PDNKDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGI 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 244 DGVILTKMDGDTRGGAALSIKAVTGKPIFYVGMGEKLSDLEQFYPERMASRILGMGDVMSLIEKVEASVDQEQAQEMQKK 323
Cdd:PRK00771 235 GGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEK 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 324 LKKMDFDFNDYLTSMEQMNKMGGISSILNMLPGMGGKMKDIEGMIDEKAMDRTKSIILSMTPQERSNPNILNISRKNRIA 403
Cdd:PRK00771 315 MMKGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGKLPDEALEVTEEKLKKYKAIMDSMTEEELENPEIINASRIRRIA 394
|
410 420 430
....*....|....*....|....*....|....*....
gi 1567206637 404 RGAGVDITEVNRLVKQFEQSKKMMKQMpglTGGKMNMGK 442
Cdd:PRK00771 395 RGSGTTVEDVRELLKYYKMMKKAMKQL---KKGKGKMGK 430
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
103-295 |
3.21e-111 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 325.71 E-value: 3.21e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 103 TVLMMVGLQGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKQNPVDIAKAAIEHAKS 182
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 183 NQQNVVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDAMTGQDAVNVAQNFSDKVGIDGVILTKMDGDTRGGAALS 262
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 1567206637 263 IKAVTGKPIFYVGMGEKLSDLEQFYPERMASRI 295
Cdd:cd18539 161 IRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
103-297 |
8.63e-106 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 312.04 E-value: 8.63e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 103 TVLMMVGLQGAGKTTTVAKLAGKLKSKG-KKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKQNPVDIAKAAIEHAK 181
Cdd:smart00962 2 GVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 182 SNQQNVVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDAMTGQDAVNVAQNFSDKVGIDGVILTKMDGDTRGGAAL 261
Cdd:smart00962 82 ARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAAL 161
|
170 180 190
....*....|....*....|....*....|....*.
gi 1567206637 262 SIKAVTGKPIFYVGMGEKLSDLEQFYPERMASRILG 297
Cdd:smart00962 162 SIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
103-295 |
2.98e-97 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 289.83 E-value: 2.98e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 103 TVLMMVGLQGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKQNPVDIAKAAIEHAKS 182
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 183 NQQNVVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDAMTGQDAVNVAQNFSDKVGIDGVILTKMDGDTRGGAALS 262
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 1567206637 263 IKAVTGKPIFYVGMGEKLSDLEQFYPERMASRI 295
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
6-430 |
3.75e-85 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 267.47 E-value: 3.75e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 6 LTDKLQNVFKKLKGKGRLTEADVKVALKEVKMALLEADVNFKVVKQFTKSVQEKAIGQDVMNGLNPGQMVIKIVNDELVN 85
Cdd:TIGR01425 5 LGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEELCN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 86 LMGSETTELPIKPGMDlTVLMMVGLQGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGD 165
Cdd:TIGR01425 85 LVDPGVEAFTPKKGKT-CVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 166 KQNPVDIAKAAIEHAKSNQQNVVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDAMTGQDAVNVAQNFSDKVGIDG 245
Cdd:TIGR01425 164 ESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVEVGS 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 246 VILTKMDGDTRGGAALSIKAVTGKPIFYVGMGEKLSDLEQFYPERMASRILGMGDVMSLIEKVEASVDQEQAQEMQKKLK 325
Cdd:TIGR01425 244 VIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEKTLIEHLK 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 326 KMDFDFNDYLTSMEQMNKMGGISSILNMLPGMGGKMkdIEGMIDEKAMDRTK---SIILSMTPQERSNPNILNI---SRK 399
Cdd:TIGR01425 324 EGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSHPM--MSKGNEEETSAKIKvfmTIMDSMTDRELDSTAKTMLkdpSRI 401
|
410 420 430
....*....|....*....|....*....|.
gi 1567206637 400 NRIARGAGVDITEVNRLVKQFeqskKMMKQM 430
Cdd:TIGR01425 402 RRVARGSGRDIREVNELLEQY----KLFAQM 428
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
4-297 |
4.16e-84 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 260.34 E-value: 4.16e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 4 ESLTDKLQNVFKklkGKGRLTEADvkvaLKEVKMALLEADVNFKVVKQFTKSVQEKAIGQdvmnGLNPGQMVIKIVNDEL 83
Cdd:COG0552 14 SGLGEKLKSLFS---GKKKIDEDL----LEELEELLIEADVGVETTEEIIEELRERVKRK----KLKDPEELKEALKEEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 84 VNLMGSETTELPIKPGMdLTVLMMVGLQGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSM 163
Cdd:COG0552 83 LEILDPVDKPLAIEEKK-PFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIAQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 164 GDKQNPVDIAKAAIEHAKSNQQNVVLIDTAGRLHIDEDMMQELEDIK------ANVNVDATVLVVDAMTGQDAVNVAQNF 237
Cdd:COG0552 162 KEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKrvikklDPDAPHEVLLVLDATTGQNALSQAKVF 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 238 SDKVGIDGVILTKMDGDTRGGAALSIKAVTGKPIFYVGMGEKLSDLEQFYPERMASRILG 297
Cdd:COG0552 242 NEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
8-297 |
6.27e-81 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 253.36 E-value: 6.27e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 8 DKLQNVFKKLKGKgRLTEADVKVALKEVKMALLEADVNFKVVKQFTKSVQEKAIGQDVMNGLNPGQMVIKIVNDELVNLM 87
Cdd:PRK14974 44 KEKPGFFDKAKIT-EIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 88 GSETTELPI-------KPgmdlTVLMMVGLQGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEV 160
Cdd:PRK14974 123 SVGDLFDLIeeikskgKP----VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKV 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 161 FSMGDKQNPVDIAKAAIEHAKSNQQNVVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDAMTGQDAVNVAQNFSDK 240
Cdd:PRK14974 199 IKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA 278
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1567206637 241 VGIDGVILTKMDGDTRGGAALSIKAVTGKPIFYVGMGEKLSDLEQFYPERMASRILG 297
Cdd:PRK14974 279 VGIDGVILTKVDADAKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
104-295 |
3.41e-78 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 241.12 E-value: 3.41e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 104 VLMMVGLQGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKQNPVDIAKAAIEHAKSN 183
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 184 QQNVVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDAMTGQDAVNVAQNFSDKVGIDGVILTKMDGDTRGGAALSI 263
Cdd:cd03115 82 GYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAALSI 161
|
170 180 190
....*....|....*....|....*....|..
gi 1567206637 264 KAVTGKPIFYVGMGEKLSDLEQFYPERMASRI 295
Cdd:cd03115 162 VAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
27-296 |
1.63e-74 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 234.84 E-value: 1.63e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 27 DVKVALKEVKMALLEADVNFKVVKQFTKSVQEKAIGQDVMNGLNPGQMVIKIVNDELVNLMGSETTELPIKPGMDLTVLM 106
Cdd:TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNTDLELIVEENKPNVIL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 107 MVGLQGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKQNPVDIAKAAIEHAKSNQQN 186
Cdd:TIGR00064 82 FVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNID 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 187 VVLIDTAGRLHIDEDMMQELEDIK------ANVNVDATVLVVDAMTGQDAVNVAQNFSDKVGIDGVILTKMDGDTRGGAA 260
Cdd:TIGR00064 162 VVLIDTAGRLQNKVNLMDELKKIKrvikkvDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGII 241
|
250 260 270
....*....|....*....|....*....|....*.
gi 1567206637 261 LSIKAVTGKPIFYVGMGEKLSDLEQFYPERMASRIL 296
Cdd:TIGR00064 242 LSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
4-297 |
2.62e-71 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 228.06 E-value: 2.62e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 4 ESLTDKLQNVFkklkGKGRLTEAdvkvALKEVKMALLEADVNFKVVKQFTKSVQEKAIGqdvmNGLNPGQMVIKIVNDEL 83
Cdd:PRK10416 29 ENFGEGINGLF----AKKKIDED----LLEELEELLIEADVGVETTEEIIEELRERVKR----KNLKDPEELKELLKEEL 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 84 VNLMGSETTELPIKPGmDLTVLMMVGLQGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSM 163
Cdd:PRK10416 97 AEILEPVEKPLNIEEK-KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 164 GDKQNPVDIAKAAIEHAKSNQQNVVLIDTAGRLHIDEDMMQELEDIK---------ANVNVdatVLVVDAMTGQDAVNVA 234
Cdd:PRK10416 176 KEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKrvikkadpdAPHEV---LLVLDATTGQNALSQA 252
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1567206637 235 QNFSDKVGIDGVILTKMDGDTRGGAALSIKAVTGKPIFYVGMGEKLSDLEQFYPERMASRILG 297
Cdd:PRK10416 253 KAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
103-295 |
2.89e-65 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 208.19 E-value: 2.89e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 103 TVLMMVGLQGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKQNPVDIAKAAIEHAKS 182
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 183 NQQNVVLIDTAGRLHIDEDMMQELEDIK---ANVNVDA---TVLVVDAMTGQDAVNVAQNFSDKVGIDGVILTKMDGDTR 256
Cdd:cd17874 81 RGIDVVLIDTAGRLHTKKNLMEELKKIKrviKKKDPEApheVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAK 160
|
170 180 190
....*....|....*....|....*....|....*....
gi 1567206637 257 GGAALSIKAVTGKPIFYVGMGEKLSDLEQFYPERMASRI 295
Cdd:cd17874 161 GGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
104-295 |
4.07e-64 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 205.12 E-value: 4.07e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 104 VLMMVGLQGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKQNPVDIAKAAIEHAKSN 183
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKKE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 184 QQNVVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDAMTGQDAVNVAQNFSDKVGIDGVILTKMDGDTRGGAALSI 263
Cdd:cd17875 82 KFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALSA 161
|
170 180 190
....*....|....*....|....*....|..
gi 1567206637 264 KAVTGKPIFYVGMGEKLSDLEQFYPERMASRI 295
Cdd:cd17875 162 VAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
104-289 |
4.39e-46 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 158.55 E-value: 4.39e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 104 VLMMVGLQGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKQNPVDIAKAAIEHAKSN 183
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 184 QQNVVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDAMTGQDAVNVAQNFSDKV----------GIDGVILTKMDG 253
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGIVLTKFDT 161
|
170 180 190
....*....|....*....|....*....|....*..
gi 1567206637 254 -DTRGGAALSIKAVTGKPIFYVGMGEKLSDLEQFYPE 289
Cdd:cd17876 162 iDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVK 198
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
329-425 |
4.62e-40 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 138.68 E-value: 4.62e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 329 FDFNDYLTSMEQMNKMGGISSILNMLPGMGGKMKDIEGmidEKAMDRTKSIILSMTPQERSNPNILNISRKNRIARGAGV 408
Cdd:pfam02978 2 FTLRDFLEQLQQIKKMGPLSKILSMIPGMGKKDDDIDS---EKKLKRIEAIIDSMTPKERDNPDIINASRKRRIARGSGT 78
|
90
....*....|....*..
gi 1567206637 409 DITEVNRLVKQFEQSKK 425
Cdd:pfam02978 79 SVQEVNRLLKQFKQMKK 95
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
8-297 |
1.81e-39 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 145.39 E-value: 1.81e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 8 DKLQNVFKKLKGKGRLTEADVKVALKEVKMALLEADVNFKVVKQFTKSVQEKAIGQDVMnglnpgqmviKIVNDELVNLM 87
Cdd:COG1419 84 AELKELLEEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDLSAEEAW----------RALLEALARRL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 88 GSETTELPIKPGmdltVLMMVGLQGAGKTTTVAKLAGKLKSKGKKPL-LVACDVYRPAAITQLQVNGEKQGVEVFSMGDK 166
Cdd:COG1419 154 PVAEDPLLDEGG----VIALVGPTGVGKTTTIAKLAARFVLRGKKKVaLITTDTYRIGAVEQLKTYARILGVPVEVAYDP 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 167 QnpvDIAKAAIEHAKSnqqNVVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDA-MTGQDAVNVAQNFSDkVGIDG 245
Cdd:COG1419 230 E---ELKEALERLRDK---DLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVLSAtTKYEDLKEIVEAFSS-LGLDG 302
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1567206637 246 VILTKMDGDTRGGAALSIKAVTGKPIFYVGMGEKL-SDLEQFYPERMASRILG 297
Cdd:COG1419 303 LILTKLDETASLGSILNLLIRTGLPLSYITNGQRVpEDIEVADPERLARLLLG 355
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
104-295 |
7.59e-33 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 122.66 E-value: 7.59e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 104 VLMMVGLQGAGKTTTVAKLAGKLK-SKGKKPLLVACDVYRPAAITQLQVNGEKQGVevfsmgdkqnPVDIAK--AAIEHA 180
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVlKKGKKVALITTDTYRIGAVEQLKTYAEIMGI----------PVEVAEdpEDLADA 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 181 KSNQQN--VVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDAMT-GQDAVNVAQNFSDkVGIDGVILTKMDGDTRG 257
Cdd:cd17873 72 LERLSDrdLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSATTkAKDLKEIIERFSP-LGYRGLILTKLDETTSL 150
|
170 180 190
....*....|....*....|....*....|....*....
gi 1567206637 258 GAALSIKAVTGKPIFYVGMGEKL-SDLEQFYPERMASRI 295
Cdd:cd17873 151 GSVLSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
6-83 |
1.49e-23 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 93.69 E-value: 1.49e-23
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1567206637 6 LTDKLQNVFKKLKGKGRLTEADVKVALKEVKMALLEADVNFKVVKQFTKSVQEKAIGQDvmnGLNPGQMVIKIVNDEL 83
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVGEK---KLKPPQEVKKILKEEL 75
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
104-297 |
4.00e-23 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 101.12 E-value: 4.00e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 104 VLMMVGLQGAGKTTTVAKLAGK--LKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVevfsmgdkqnPVDIAKAAIEHAK 181
Cdd:PRK05703 223 VVALVGPTGVGKTTTLAKLAARyaLLYGKKKVALITLDTYRIGAVEQLKTYAKIMGI----------PVEVVYDPKELAK 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 182 SNQQ----NVVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDAMTGQ--DAVNVAQNFSdKVGIDGVILTKMDgDT 255
Cdd:PRK05703 293 ALEQlrdcDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKyeDLKDIYKHFS-RLPLDGLIFTKLD-ET 370
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1567206637 256 RG-GAALSIKAVTGKPIFYVGMGEKL-SDLEQFYPERMASRILG 297
Cdd:PRK05703 371 SSlGSILSLLIESGLPISYLTNGQRVpDDIKVANPEELVRLLLG 414
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
10-87 |
4.69e-21 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 86.84 E-value: 4.69e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1567206637 10 LQNVFKKLKGKGRLTEADVKVALKEVKMALLEADVNFKVVKQFTKSVQEKAIGqDVMNGLNPGQMVIKIVNDELVNLM 87
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKG-EVLKGLTPKQEVKKILKEELVKIL 77
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
101-278 |
1.20e-17 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 84.73 E-value: 1.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 101 DLTVLMMVGLQGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKqnpVDIAKAAIEHA 180
Cdd:PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDE---AAMTRALTYFK 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 181 KSNQQNVVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDA-MTGQDAVNVAQNFSDkVGIDGVILTKMDGDTRGGA 259
Cdd:PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGE 395
|
170
....*....|....*....
gi 1567206637 260 ALSIKAVTGKPIFYVGMGE 278
Cdd:PRK11889 396 LLKIPAVSSAPIVLMTDGQ 414
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
104-292 |
2.63e-15 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 78.30 E-value: 2.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 104 VLMMVGLQGAGKTTTVAKLAGK--LKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDkqnpVDIAKAAIEHAK 181
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAARcvAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKD----AADLRFALAALG 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 182 SnqQNVVLIDTAGRLHIDEDMMqelEDIKANVNVDATV---LVVDAMTGQDAVN-VAQNFSDKVG--IDGVILTKMDGDT 255
Cdd:PRK14723 263 D--KHLVLIDTVGMSQRDRNVS---EQIAMLCGVGRPVrrlLLLNAASHGDTLNeVVHAYRHGAGedVDGCIITKLDEAT 337
|
170 180 190
....*....|....*....|....*....|....*..
gi 1567206637 256 RGGAALSIKAVTGKPIFYVGMGEKLsdleqfyPERMA 292
Cdd:PRK14723 338 HLGPALDTVIRHRLPVHYVSTGQKV-------PEHLE 367
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
101-280 |
3.66e-15 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 75.55 E-value: 3.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 101 DLTVLMMVGLQGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKqnpVDIAKAAIEHA 180
Cdd:PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDE---AAMTRALTYFK 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 181 KSNQQNVVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDA-MTGQDAVNVAQNFSDkVGIDGVILTKMDGDTRGGA 259
Cdd:PRK06731 151 EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAsMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGE 229
|
170 180
....*....|....*....|.
gi 1567206637 260 ALSIKAVTGKPIFYVGMGEKL 280
Cdd:PRK06731 230 LLKIPAVSSAPIVLMTDGQDV 250
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
93-297 |
8.00e-15 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 75.93 E-value: 8.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 93 ELPIKPGMDLT---VLMMVGLQGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSmgdKQNP 169
Cdd:PRK12726 194 KLAVEDSFDLSnhrIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIV---ATSP 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 170 VDIAKAAIEHAKSNQQNVVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDA-MTGQDAVNVAQNFSDkVGIDGVIL 248
Cdd:PRK12726 271 AELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSgMKSADVMTILPKLAE-IPIDGFII 349
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1567206637 249 TKMDGDTRGGAALSIKAVTGKPIFYVGMGEKLSDlEQFYPER--MASRILG 297
Cdd:PRK12726 350 TKMDETTRIGDLYTVMQETNLPVLYMTDGQNITE-NIFRPKSrwLAERFVG 399
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
86-282 |
8.08e-14 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 73.49 E-value: 8.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 86 LMGSETTELPIKPGMDLT---VLMMVGLQGAGKTTTVAKLAGKLKSK--GKKPLLVACDVYRPAAITQLQVNGEKQGVEV 160
Cdd:PRK12727 331 MLGLLSKRLPVAPVDPLErggVIALVGPTGAGKTTTIAKLAQRFAAQhaPRDVALVTTDTQRVGGREQLHSYGRQLGIAV 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 161 FSMGDKQNPVDIakaaIEHAKSNQqnVVLIDTAGRLHIDEDMMQELEDIKANVNVdATVLVVDAMTG-QDAVNVAQNFSd 239
Cdd:PRK12727 411 HEADSAESLLDL----LERLRDYK--LVLIDTAGMGQRDRALAAQLNWLRAARQV-TSLLVLPANAHfSDLDEVVRRFA- 482
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1567206637 240 KVGIDGVILTKMDGDTRGGAALSIKAVTGKPIFYVGMGEKLSD 282
Cdd:PRK12727 483 HAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPD 525
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
39-194 |
3.39e-13 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 69.67 E-value: 3.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 39 LLEADVNFKVVKQFTKSVQEKAIGQDVMNGLNpgqmvikivnDELVNLMGSETTELPI--KPGmdltVLMMVGLQGAGKT 116
Cdd:TIGR03499 143 LLEAGVSEELARELLEKLPEDADAEDAWRWLR----------EALEGMLPVKPEEDPIleQGG----VIALVGPTGVGKT 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 117 TTVAKLAGK--LKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDkqnPVDIAKAAIEHaksNQQNVVLIDTAG 194
Cdd:TIGR03499 209 TTLAKLAARfaLEHGKKKVALITTDTYRIGAVEQLKTYAEILGIPVKVARD---PKELREALDRL---RDKDLILIDTAG 282
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
104-280 |
1.70e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 65.76 E-value: 1.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 104 VLMMVGLQGAGKTTTVAKLAGKLK-SKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFsmgdkqnPVDIAKAAIEHAKS 182
Cdd:PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFlHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-------PVKDIKKFKETLAR 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 183 NQQNVVLIDTAGRLHIDEDM---MQELEDIKANVNVDATVLVVDAMTGQDAVNVAQNFSDKVGIDGVILTKMDGDTRGGA 259
Cdd:PRK12724 298 DGSELILIDTAGYSHRNLEQlerMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLGS 377
|
170 180
....*....|....*....|.
gi 1567206637 260 ALSIKAVTGKPIFYVGMGEKL 280
Cdd:PRK12724 378 FLELADTYSKSFTYLSVGQEV 398
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
104-226 |
1.32e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 59.31 E-value: 1.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 104 VLMMVGLQGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSmgdkqnPVDIAKAAIEHAKSN 183
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGS------GELRLRLALALARKL 77
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1567206637 184 QQNVVLIDTAGRLHIDEDMMQELEDIKANV----NVDATVLVVDAMT 226
Cdd:smart00382 78 KPDVLILDEITSLLDAEQEALLLLLEELRLllllKSEKNLTVILTTN 124
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
104-282 |
2.56e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 61.66 E-value: 2.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 104 VLMMVGLQGAGKTTTVAKLAGK--LKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKQNpVDIAKAAIEHak 181
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAARcvMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD-LQLALAELRN-- 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 182 snqQNVVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDAMTGQDAVN-VAQNFSDKVG--------IDGVILTKMD 252
Cdd:PRK14722 216 ---KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNeVVQAYRSAAGqpkaalpdLAGCILTKLD 292
|
170 180 190
....*....|....*....|....*....|
gi 1567206637 253 GDTRGGAALSIKAVTGKPIFYVGMGEKLSD 282
Cdd:PRK14722 293 EASNLGGVLDTVIRYKLPVHYVSTGQKVPE 322
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
104-279 |
2.84e-09 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 58.82 E-value: 2.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 104 VLMMVGLQGAGKTTTVAKLAGK--LKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKQnpvDIAKAAIE--- 178
Cdd:PRK06995 258 VFALMGPTGVGKTTTTAKLAARcvMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAA---DLRLALSElrn 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 179 -HaksnqqnVVLIDTAGrlhidedMMQE----LEDIKANVNVDATV---LVVDAMTGQDAVN-VAQNFSDKvGIDGVILT 249
Cdd:PRK06995 335 kH-------IVLIDTIG-------MSQRdrmvSEQIAMLHGAGAPVkrlLLLNATSHGDTLNeVVQAYRGP-GLAGCILT 399
|
170 180 190
....*....|....*....|....*....|.
gi 1567206637 250 KMDGDTRGGAALSIkAVTGK-PIFYVGMGEK 279
Cdd:PRK06995 400 KLDEAASLGGALDV-VIRYKlPLHYVSNGQR 429
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
104-280 |
3.29e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 58.42 E-value: 3.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 104 VLMMVGLQGAGKTTTVAKLAGK--LKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGdkqnpvDIAKAAIEHAK 181
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLAARavIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIK------DIADLQLMLHE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 182 SNQQNVVLIDTAGRLHIDEDMMQELEDIKANVNVDATVLVVDAMTGQDAVNVAQNFSDKVGIDGVILTKMDGDTRGGAAL 261
Cdd:PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIAL 346
|
170
....*....|....*....
gi 1567206637 262 SIKAVTGKPIFYVGMGEKL 280
Cdd:PRK14721 347 DAVIRRKLVLHYVTNGQKV 365
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
104-325 |
8.40e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 57.22 E-value: 8.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 104 VLMMVGLQGAGKTTTVAKLAG----KLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGDKQNPVDiakaaiEH 179
Cdd:PRK12723 176 VFILVGPTGVGKTTTIAKLAAiygiNSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKE------EI 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 180 AKSNQQNVVLIDTAGRLHIDEDMMQELEDIKANVNVDATV-LVVDAMT-GQDAVNVAQNFSdKVGIDGVILTKMDGDTRG 257
Cdd:PRK12723 250 TQSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFhLAVSSTTkTSDVKEIFHQFS-PFSYKTVIFTKLDETTCV 328
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1567206637 258 GAALSIKAVTGKPIFYVGMGeklsdleQFYPERMAsrilgMGDVMSLIEKVEAsVDQEQAQEMQKKLK 325
Cdd:PRK12723 329 GNLISLIYEMRKEVSYVTDG-------QIVPHNIS-----IAEPLTFIKKING-YRISDDAEFIRKLK 383
|
|
| SIMIBI |
cd01983 |
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
104-250 |
2.65e-06 |
|
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 45.88 E-value: 2.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 104 VLMMVGLQ-GAGKTTTVAKLAGKLKSKGKKPLLVACDvyrpaaitqlqvngekqgvevfsmgdkqnpvdiakaaiehaks 182
Cdd:cd01983 2 VIAVTGGKgGVGKTTLAAALAVALAAKGYKVLLIDLD------------------------------------------- 38
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1567206637 183 nqqNVVLIDTAGRLHIDEDMMQELEDIKANVnVDATVLVVDAMTGQD----AVNVAQNFSDKVG-IDGVILTK 250
Cdd:cd01983 39 ---DYVLIDGGGGLETGLLLGTIVALLALKK-ADEVIVVVDPELGSLleavKLLLALLLLGIGIrPDGIVLNK 107
|
|
| Mrp |
COG0489 |
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, ... |
101-257 |
1.71e-05 |
|
Fe-S cluster carrier ATPase, Mrp/ApbC/NBP35 family [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440255 [Multi-domain] Cd Length: 289 Bit Score: 46.33 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 101 DLTVLMMV-GLQGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNG---------------------EKQGV 158
Cdd:COG0489 91 LLEVIAVTsGKGGEGKSTVAANLALALAQSGKRVLLIDADLRGPSLHRMLGLENrpglsdvlageasledviqptEVEGL 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 159 EVFSMGDK-QNPVDIA-----KAAIEHAKSnQQNVVLIDTA-GRLHIDEDMMQELedikanvnVDATVLVVDA-MTGQDA 230
Cdd:COG0489 171 DVLPAGPLpPNPSELLaskrlKQLLEELRG-RYDYVIIDTPpGLGVADATLLASL--------VDGVLLVVRPgKTALDD 241
|
170 180
....*....|....*....|....*....
gi 1567206637 231 VNVAQNFSDKVGID--GVILTKMDGDTRG 257
Cdd:COG0489 242 VRKALEMLEKAGVPvlGVVLNMVCPKGER 270
|
|
| PHA02518 |
PHA02518 |
ParA-like protein; Provisional |
100-195 |
2.54e-03 |
|
ParA-like protein; Provisional
Pssm-ID: 222854 [Multi-domain] Cd Length: 211 Bit Score: 39.06 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 100 MDLTVLMMVGlqGAGKTTTVAKLAGKLKSKGKKPLLVACDVYRPAAITQLQVNGEKQGVEVFSMGdKQNPVDIAKAAieh 179
Cdd:PHA02518 1 KIIAVLNQKG--GAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEGEPLIPVVRMG-KSIRADLPKVA--- 74
|
90
....*....|....*.
gi 1567206637 180 aksNQQNVVLIDTAGR 195
Cdd:PHA02518 75 ---SGYDYVVVDGAPQ 87
|
|
| COG4639 |
COG4639 |
Predicted kinase [General function prediction only]; |
102-224 |
8.12e-03 |
|
Predicted kinase [General function prediction only];
Pssm-ID: 443677 [Multi-domain] Cd Length: 145 Bit Score: 36.73 E-value: 8.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1567206637 102 LTVLMMVGLQGAGKTTTVAKLAgklkskgKKPLLVACDVYRpaaiTQLQVNGEKQGVE--VFsmgdkqnpvDIAKAAIEH 179
Cdd:COG4639 2 LSLVVLIGLPGSGKSTFARRLF-------APTEVVSSDDIR----ALLGGDENDQSAWgdVF---------QLAHEIARA 61
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1567206637 180 AKSNQQNVVLIDTagrlHIDEDMMQELEDIKANVNVDATVLVVDA 224
Cdd:COG4639 62 RLRAGRLTVVDAT----NLQREARRRLLALARAYGALVVAVVLDV 102
|
|
| |
