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Conserved domains on  [gi|1603565968|emb|VFV17127|]
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cytochrome b-c1 complex subunit [Lynx pardinus]

Protein Classification

cytochrome b-c1 complex subunit 8( domain architecture ID 1317)

cytochrome b-c1 complex subunit 8 is a component of the ubiquinol-cytochrome c oxidoreductase, a multisubunit transmembrane complex that is part of the mitochondrial electron transport chain which drives oxidative phosphorylation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UcrQ super family cl03789
UcrQ family; The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a ...
 5-42 7.33e-09

UcrQ family; The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex. This family represents the 9.5 kDa subunit of the complex.


The actual alignment was detected with superfamily member pfam02939:

Pssm-ID: 460757  Cd Length: 76  Bit Score: 46.74  E-value: 7.33e-09
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 1603565968  5 TRACILDVVPPFVAFYPVYTRGTQEFVKAKRKNPAAYE 42
Cdd:pfam02939 39 TRSQVLYVAPPFIIGYLIYTWAKERNEYLNRKAGRDYE 76
 
Name Accession Description Interval E-value
UcrQ pfam02939
UcrQ family; The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a ...
 5-42 7.33e-09

UcrQ family; The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex. This family represents the 9.5 kDa subunit of the complex.


Pssm-ID: 460757  Cd Length: 76  Bit Score: 46.74  E-value: 7.33e-09
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 1603565968  5 TRACILDVVPPFVAFYPVYTRGTQEFVKAKRKNPAAYE 42
Cdd:pfam02939 39 TRSQVLYVAPPFIIGYLIYTWAKERNEYLNRKAGRDYE 76
 
Name Accession Description Interval E-value
UcrQ pfam02939
UcrQ family; The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a ...
 5-42 7.33e-09

UcrQ family; The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex. This family represents the 9.5 kDa subunit of the complex.


Pssm-ID: 460757  Cd Length: 76  Bit Score: 46.74  E-value: 7.33e-09
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 1603565968  5 TRACILDVVPPFVAFYPVYTRGTQEFVKAKRKNPAAYE 42
Cdd:pfam02939 39 TRSQVLYVAPPFIIGYLIYTWAKERNEYLNRKAGRDYE 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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