|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
12-323 |
3.59e-93 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 280.07 E-value: 3.59e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 12 SLPRRLLHNHSGVVSIALFFVFCCVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGAL 91
Cdd:COG1172 6 TTARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 92 SAIALNSWGLPWPVVLLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPVPADSlFTFIGRAW 171
Cdd:COG1172 86 AALLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDA-FRALGQGS 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 172 VVGIPMPALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSN 251
Cdd:COG1172 165 LLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPN 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1602298944 252 QGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWLNTRI 323
Cdd:COG1172 245 AGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLR 316
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
58-320 |
3.49e-78 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 239.62 E-value: 3.49e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 58 SAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNSWGLPWPVVLLGGLLLGGFVGAINGFFIAYEGIPAFIVTL 137
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 138 ATLAVVRGIALLVTQGYSIPVPADSLFTFIGRAWVVGIPMPALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGI 217
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 218 NTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLIL 297
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 1602298944 298 SHISPFYTQIATGTIILLAIWLN 320
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
27-322 |
5.56e-63 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 202.64 E-value: 5.56e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 27 IALFFVFccVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAiALNSWGLPWPVV 106
Cdd:PRK09512 23 IALLVLI--AIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAA-SIVGIEVNALVA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 107 LLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPV----PADsLFTFIGRAWVVGIPMPALLG 182
Cdd:PRK09512 100 VPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTgftdNAD-LFGWFGIGRPLGIPTPVWIM 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 183 ILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGFELQVIA 262
Cdd:PRK09512 179 AIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIA 258
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 263 AVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWLNTR 322
Cdd:PRK09512 259 AVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNK 318
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
27-317 |
9.29e-52 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 175.34 E-value: 9.29e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 27 IALFFVFccVVFSLITSN-FLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNSWGLPWPV 105
Cdd:NF040906 9 IALVAIV--VLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMPWWL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 106 VLLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSI-PVP------------------------- 159
Cdd:NF040906 87 AVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIgPFPdgfqkissgflpdlfggtglhlltl 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 160 ---------------------------ADSLFTFIGRAWVV---------------GIPMPALLGILILLIGHIVLNHMR 197
Cdd:NF040906 167 llgvlaaaalvwsqlrgrrrrikygleVEPMALFIAKLVLIaaailfftyllasyrGLPNVLIILGVLILVYSFVTNRTV 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 198 FGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGFELQVIAAVVLGSTSLFGGFGT 277
Cdd:NF040906 247 IGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGT 326
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1602298944 278 IIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAI 317
Cdd:NF040906 327 VVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAV 366
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
52-316 |
3.07e-19 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 85.77 E-value: 3.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 52 LNIIRQSAPLLIVATAMTLVI-TTGGIDLSVGSTLALVGALSAIALNSWGLPWPVVLLGGLLLGGFVGAINGFFIAYEGI 130
Cdd:pfam02653 3 LNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLKI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 131 PAFIVTLATLAVVRGIALLV----TQGYSIPVPADSLFTFIGRAWVVGIPMPALLGILILLIGHIVLNHMRFGRYVTAIG 206
Cdd:pfam02653 83 NEVIITLLLNLAALGLALFLvtgiLGGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRAVG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 207 ANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQ-GEGFELQVIAAVVLgstslfGGFGTIIGTLLGA 285
Cdd:pfam02653 163 ENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNfGVGLGLDAIAAVVL------GGAGSPIGVVIGS 236
|
250 260 270
....*....|....*....|....*....|..
gi 1602298944 286 LSIAVIQN-GLILSHISPFYTQIATGTIILLA 316
Cdd:pfam02653 237 LIIGLVQSlGLGALGSPPELSLLVLGALLILV 268
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
12-323 |
3.59e-93 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 280.07 E-value: 3.59e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 12 SLPRRLLHNHSGVVSIALFFVFCCVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGAL 91
Cdd:COG1172 6 TTARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 92 SAIALNSWGLPWPVVLLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPVPADSlFTFIGRAW 171
Cdd:COG1172 86 AALLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDA-FRALGQGS 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 172 VVGIPMPALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSN 251
Cdd:COG1172 165 LLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPN 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1602298944 252 QGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWLNTRI 323
Cdd:COG1172 245 AGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLR 316
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
58-320 |
3.49e-78 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 239.62 E-value: 3.49e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 58 SAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNSWGLPWPVVLLGGLLLGGFVGAINGFFIAYEGIPAFIVTL 137
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 138 ATLAVVRGIALLVTQGYSIPVPADSLFTFIGRAWVVGIPMPALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGI 217
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 218 NTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLIL 297
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 1602298944 298 SHISPFYTQIATGTIILLAIWLN 320
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
1-319 |
1.08e-74 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 235.01 E-value: 1.08e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 1 MNLSSSRMIQHSLPRRLLHNHSGVVSIALFFVFCCVVFSLITS-NFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDL 79
Cdd:COG4214 1 MSTTAAPGGAVRSLRRLLGGDLRSLGMIIALVVIWIVFQILTGgTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 80 SVGSTLALVGALSAIALNSWGLPWPVVLLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPvP 159
Cdd:COG4214 81 SVGSVSGFVGAVAAVLMVNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIA-P 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 160 ADSLFTFIGR----------AWVV------------------------------------------------------GI 175
Cdd:COG4214 160 FDPTFQAIGNgflpdilgtlSWVLgavavaayvalqlrsrrrrrryglpveplwlfvlklallavlilgavyllnsyrGI 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 176 PMPALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEG 255
Cdd:COG4214 240 PIVVLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTG 319
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1602298944 256 FELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWL 319
Cdd:COG4214 320 FELDAIAAAVIGGTSLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAF 383
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
25-319 |
6.71e-69 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 218.26 E-value: 6.71e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 25 VSIALFFVFCCVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNSWGLPWp 104
Cdd:COG4158 30 VGMLPVLILLCIGFELLTPNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAVLVSLLPGLGL- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 105 VVLLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPVPaDSLFTFIGRAWVVGIPMPALLGIL 184
Cdd:COG4158 109 LGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANGTTVFNP-DLPFAWIGNGYLLGIPWLVVIALA 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 185 ILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQ-GEGFELQVIAA 263
Cdd:COG4158 188 VVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANGLQlGQGYELDAIAA 267
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1602298944 264 VVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWL 319
Cdd:COG4158 268 VILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVAL 323
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
27-322 |
5.56e-63 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 202.64 E-value: 5.56e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 27 IALFFVFccVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAiALNSWGLPWPVV 106
Cdd:PRK09512 23 IALLVLI--AIVSTLSPNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAA-SIVGIEVNALVA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 107 LLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPV----PADsLFTFIGRAWVVGIPMPALLG 182
Cdd:PRK09512 100 VPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTgftdNAD-LFGWFGIGRPLGIPTPVWIM 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 183 ILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGFELQVIA 262
Cdd:PRK09512 179 AIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIA 258
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 263 AVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWLNTR 322
Cdd:PRK09512 259 AVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNK 318
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
27-317 |
9.29e-52 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 175.34 E-value: 9.29e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 27 IALFFVFccVVFSLITSN-FLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNSWGLPWPV 105
Cdd:NF040906 9 IALVAIV--VLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMPWWL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 106 VLLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSI-PVP------------------------- 159
Cdd:NF040906 87 AVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIgPFPdgfqkissgflpdlfggtglhlltl 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 160 ---------------------------ADSLFTFIGRAWVV---------------GIPMPALLGILILLIGHIVLNHMR 197
Cdd:NF040906 167 llgvlaaaalvwsqlrgrrrrikygleVEPMALFIAKLVLIaaailfftyllasyrGLPNVLIILGVLILVYSFVTNRTV 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 198 FGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGFELQVIAAVVLGSTSLFGGFGT 277
Cdd:NF040906 247 IGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGT 326
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1602298944 278 IIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAI 317
Cdd:NF040906 327 VVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAV 366
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
29-320 |
4.93e-48 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 163.79 E-value: 4.93e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 29 LFFVFCCVVFSLITSN-FLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNSWGLPWPVVL 107
Cdd:PRK09699 16 FILAIIVAIFGSLSPEyFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLAGVDPFLAAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 108 LGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSI-PVPADSLFTFIGRawVVGIPMPALLGILIL 186
Cdd:PRK09699 96 IGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVyGFSFDFVNFFAAS--VIGIPVPVIFSLIVA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 187 LIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGFELQVIAAVVL 266
Cdd:PRK09699 174 LILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAII 253
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1602298944 267 GSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWLN 320
Cdd:PRK09699 254 GGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 307
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
15-320 |
3.20e-45 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 157.15 E-value: 3.20e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 15 RRLLHNHSGVVSIALFFVFCCvvfsLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAI 94
Cdd:PRK11285 24 WRIWDQYGMLVVFAVLFIACS----LFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAV 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 95 ALNSWGLPWpVVLLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPVPADSLFTFIGRAWVvG 174
Cdd:PRK11285 100 VINATESLW-LGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGISDERFFALGYANFF-G 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 175 IPMPALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGE 254
Cdd:PRK11285 178 VPAPIWLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSI 257
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1602298944 255 GFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWLN 320
Cdd:PRK11285 258 GFELIVISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFD 323
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
24-319 |
1.47e-40 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 144.32 E-value: 1.47e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 24 VVSIALF---FVFCCVVFSlitsNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNSWG 100
Cdd:PRK11618 9 MITIGVFvlgYLFCLVQFP----GFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDYG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 101 LPWPVVLLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGySIPVPADSLFTFIGRAWVVG----IP 176
Cdd:PRK11618 85 WSPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEE-SIPINHPFYDTLSSLAWKLPgggrLS 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 177 MPALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGF 256
Cdd:PRK11618 164 AMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGV 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1602298944 257 ELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILS-HISPFYTQIATGTIILLAIWL 319
Cdd:PRK11618 244 ELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDgTLSSWWTKIVIGILLFVFIAL 307
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
28-322 |
4.05e-36 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 132.89 E-value: 4.05e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 28 ALFFVFCCVVFSLI--TSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNSWG----- 100
Cdd:PRK09478 17 GIYVVLLVLLAIIIiqDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDnankv 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 101 ------LPWPVVLLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGY-SIPVPA-DSLFTFIGRAWV 172
Cdd:PRK09478 97 fpelatMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDFVgASPISGfDSGFSTFAQGFV 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 173 ----VGIPMPALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSG 248
Cdd:PRK09478 177 algsFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSA 256
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1602298944 249 SSNQGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWLNTR 322
Cdd:PRK09478 257 TNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSL 330
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
17-323 |
1.37e-32 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 123.69 E-value: 1.37e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 17 LLHNHSGVVSIALFFVFccVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIAL 96
Cdd:PRK15432 5 IQNNRELTALLAIVLLF--VLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 97 NSwGLPWPVVLLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPVPADSLFTFIGRAWVvGIP 176
Cdd:PRK15432 83 NA-GYSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPILL-GIS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 177 MPALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGF 256
Cdd:PRK15432 161 PIGWLTLILILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1602298944 257 ELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIWLNTRI 323
Cdd:PRK15432 241 EMKAIAACVLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFDGRL 307
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
25-317 |
6.10e-24 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 99.90 E-value: 6.10e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 25 VSIALFFVFCCVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGIDLSVGSTLALVgALSAIALNSWGLPWP 104
Cdd:PRK15038 9 LALAALLVIEILAFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLC-AIALGVLFQSGVPMP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 105 VVLLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVT-----QGYSIPVPADSLFTFIGRAWVVGIPMPA 179
Cdd:PRK15038 88 LAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLSgmagaTGYEGIGGFPMAFTDFANLDVLGLPVPL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 180 LLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGFELQ 259
Cdd:PRK15038 168 IIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMP 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1602298944 260 VIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAI 317
Cdd:PRK15038 248 AITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVV 305
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
52-316 |
3.07e-19 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 85.77 E-value: 3.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 52 LNIIRQSAPLLIVATAMTLVI-TTGGIDLSVGSTLALVGALSAIALNSWGLPWPVVLLGGLLLGGFVGAINGFFIAYEGI 130
Cdd:pfam02653 3 LNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLKI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 131 PAFIVTLATLAVVRGIALLV----TQGYSIPVPADSLFTFIGRAWVVGIPMPALLGILILLIGHIVLNHMRFGRYVTAIG 206
Cdd:pfam02653 83 NEVIITLLLNLAALGLALFLvtgiLGGEGGTSGITGPSGFPGAFLSFAFAFIFLLALLLVLALWLLLYRTKFGRALRAVG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 207 ANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQ-GEGFELQVIAAVVLgstslfGGFGTIIGTLLGA 285
Cdd:pfam02653 163 ENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNfGVGLGLDAIAAVVL------GGAGSPIGVVIGS 236
|
250 260 270
....*....|....*....|....*....|..
gi 1602298944 286 LSIAVIQN-GLILSHISPFYTQIATGTIILLA 316
Cdd:pfam02653 237 LIIGLVQSlGLGALGSPPELSLLVLGALLILV 268
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
60-317 |
3.78e-13 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 68.46 E-value: 3.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 60 PLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNSWGLPWPVVLLGGLLLGGFVGAINGFFIAYEGIPAFIVTLAT 139
Cdd:cd06574 3 IYAILALGVYIVFRILGFPDLTVDGSFPLGAAVAAILIVAGYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 140 LAVVRGIALLVTQGYSIPVP----ADSLFTFIGRAWVVGIPMPALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRS 215
Cdd:cd06574 83 MIGLYSINLRIMGGPNIPLGtrdtLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 216 GINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQGEGFELQVIAAVVLGSTSL--FGGFGTIIGTLLGALSIAVIQN 293
Cdd:cd06574 163 GINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVgrRTIKASILGVIIGAILYRIALA 242
|
250 260
....*....|....*....|....
gi 1602298944 294 GLILSHISPFYTQIATGTIILLAI 317
Cdd:cd06574 243 LALGSGLIPSDLKLITAGVIVLVL 266
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
130-319 |
7.15e-10 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 58.92 E-value: 7.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 130 IPAFIVTLATLAVVRGIALLV--TQGYSIPVPADSLFTFIG------RAWVVGIpmpallGILILLIGHIVLNHMRFGRY 201
Cdd:COG0559 93 LALLLATIGLSLVLQGLVLLIfgADPRSFPALLSGSVELGGvsipayRLFIIVV------ALVLLAALWLFLRRTRLGLA 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 202 VTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSgSSNQGEGFELQVIAAVVLgstslfGGFGTIIGT 281
Cdd:COG0559 167 MRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSV-SPTMGFLLGLKAFAAVVL------GGLGSIPGA 239
|
170 180 190
....*....|....*....|....*....|....*...
gi 1602298944 282 LLGALSIAVIQNgLILSHISPFYTQIATGTIILLAIWL 319
Cdd:COG0559 240 VVGGLLLGLAES-LGAAYLPSGYKDVVAFVLLILVLLV 276
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
63-317 |
5.35e-09 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 56.30 E-value: 5.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 63 IVATAMTLVITTGGIdLSVG-STLALVGA-LSAIALNSWGLPWPVVLLGGLLLGGFVGAINGFFIA-YEGIPAFIVTLAT 139
Cdd:cd06581 6 ILALGLNLLLGYAGQ-LSLGhAAFFGIGAyTAALLATRLGLPFWLALLAAGLVAALVGLLLGLPALrLRGVYFAIATLAF 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 140 LAVVRGIAL---LVTQGYS-IPVPADSLFTFIGRAWVVGIPMPALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRS 215
Cdd:cd06581 85 AEIVRLLALnwsSLTGGSNgLSGIPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEAL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 216 GINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQ-GEGFELQVIAAVVLgstslfGGFGTIIGTLLGALSIAVIQNg 294
Cdd:cd06581 165 GINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESfGFALSIELLLMVVL------GGLGSLLGPVLGAALLVLLPE- 237
|
250 260
....*....|....*....|...
gi 1602298944 295 lILSHISPFYTQIATGTIILLAI 317
Cdd:cd06581 238 -LLRSLGPGLRLLVFGLLLILVV 259
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
61-319 |
7.98e-09 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 55.51 E-value: 7.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 61 LLIVATAMTLVI-TTGGIDLSVGSTLALVGALSAIALNSWGLP-WPVVLLGGLLLGGFVGAINGFFIAY---EGIPAFIV 135
Cdd:cd06582 8 YALIALGLTLIFgVTGVINFAHGEFYMLGAYVAYTLLVALGLPfWLALLLALLVAALLGVLLERLVLRPlrgAPLLTLLI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 136 TLATLAVVRGIALLVTQGYSIPVPADSLFTFIgraWVVGIPMPALLGILILLIGHIVL------NHMRFGRYVTAIGANA 209
Cdd:cd06582 88 TFGGLLILLQGLLLIFGGDPRVPPPPLLSGSV---ELGGVTIPPYRLFIIAVALVLLAalylflRRTRLGRAIRAVAQNP 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 210 EGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSgSSNQGEGFELQVIAAVVLgstslfGGFGTIIGTLLGALSIA 289
Cdd:cd06582 165 EAARLLGINVRRVFALTFALGAALAGLAGVLLAPITGV-SPTMGLLLLLKAFAAVVL------GGLGSIPGAVVGGLLLG 237
|
250 260 270
....*....|....*....|....*....|
gi 1602298944 290 VIQNgLILSHISPFYTQIATGTIILLAIWL 319
Cdd:cd06582 238 LAES-LAAAYLSSGYKDAVAFVLLILVLLV 266
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
51-317 |
2.68e-06 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 48.15 E-value: 2.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 51 WLNIIRQSAPLLIVATAMTLVITTGGIdLSVG-STLALVGA-LSAIALNSWGLPWPVVLLGGLLLGGFVGAINGFFIA-Y 127
Cdd:COG4177 4 YLSLLTLILIYAILALGLNLLLGYTGL-LSLGhAAFFGIGAyAAALLTTHLGLPFWLALLLAGLVAALLGLLIGLPALrL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 128 EGIPAFIVTLATLAVVRGIAL---LVTQG----YSIPVPADSLFTFIGRAWVVGIpmpALLGILILLIGHIVLNHMRFGR 200
Cdd:COG4177 83 RGDYLAIATLAFAEIVRLLALnleSLTGGadglSGIPRPTLFGLDLGSPLAFYYL---VLALLVLVLLLLRRLVRSRFGR 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 201 YVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITARLGSGSSNQ-GEGFELQVIAAVVLgstslfGGFGTII 279
Cdd:COG4177 160 ALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPESfSFLLSIEILLMVVL------GGLGSLL 233
|
250 260 270
....*....|....*....|....*....|....*...
gi 1602298944 280 GTLLGALSIAVIQNGLilsHISPFYTQIATGTIILLAI 317
Cdd:COG4177 234 GPVLGAVLLVLLPELL---RSLPEYRLLIFGLLLILVV 268
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
194-317 |
1.57e-05 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 46.27 E-value: 1.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 194 NHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMIITA----RLGSGSSnQGEGFElqVIAAVVLGSt 269
Cdd:COG4603 215 NRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVEVLgvqgRLTPGFS-PGYGFT--GIAVALLGR- 290
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1602298944 270 slfggfGTIIGTLLGALSIAVIQNG----LILSHISPFYTQIATGTIILLAI 317
Cdd:COG4603 291 ------NNPLGIILAALLFGALYVGgdamQRALGVPSEIVDVIQGLIILFVL 336
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
194-316 |
1.12e-04 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 42.81 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1602298944 194 NHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAGMI-ITARLGSGSSNQGEGFELQVIAAVVLgstslf 272
Cdd:cd06580 113 YRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYlVLGVQGRFTEGMSAGYGFIAIAVALL------ 186
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1602298944 273 gGFGTIIGTLLGALSIAVIQNGLI----LSHISPFYTQIATGTIILLA 316
Cdd:cd06580 187 -GRWNPLGILLAALLFGALEAGGIalqrSGGVPSELVQVLPGIIVLFV 233
|
|
| |
