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Conserved domains on  [gi|2428895476|gb|WBU98161|]
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nitrate reductase, partial [Mycobacteriales bacterium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NarG super family cl34865
Nitrate reductase alpha subunit [Energy production and conversion, Inorganic ion transport and ...
 1-91 3.90e-53

Nitrate reductase alpha subunit [Energy production and conversion, Inorganic ion transport and metabolism];


The actual alignment was detected with superfamily member COG5013:

Pssm-ID: 444037 [Multi-domain]  Cd Length: 1231  Bit Score: 176.93  E-value: 3.90e-53
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2428895476    1 CRPVTGWSTLAFGLDWQRPPRQMQGTVFWYLATDQWRYDRFTSEAMASPLADGRFAGRTAADNIALASRLGWMPSYPTFN 80
Cdd:COG5013    579 LRPQTGWQPLAFALDWSRPPRQMNGTSFFYAHTDQWRYETLSADELLSPLADGKFWGGHLADYNVRAARLGWLPSYPQFN 658

                           90
                   ....*....|.
gi 2428895476   81 RNPLDLVDEAA 91
Cdd:COG5013    659 RNPLDLADEAE 669
 
Name Accession Description Interval E-value
NarG COG5013
Nitrate reductase alpha subunit [Energy production and conversion, Inorganic ion transport and ...
 1-91 3.90e-53

Nitrate reductase alpha subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 444037 [Multi-domain]  Cd Length: 1231  Bit Score: 176.93  E-value: 3.90e-53
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2428895476    1 CRPVTGWSTLAFGLDWQRPPRQMQGTVFWYLATDQWRYDRFTSEAMASPLADGRFAGRTAADNIALASRLGWMPSYPTFN 80
Cdd:COG5013    579 LRPQTGWQPLAFALDWSRPPRQMNGTSFFYAHTDQWRYETLSADELLSPLADGKFWGGHLADYNVRAARLGWLPSYPQFN 658

                           90
                   ....*....|.
gi 2428895476   81 RNPLDLVDEAA 91
Cdd:COG5013    659 RNPLDLADEAE 669
 
Name Accession Description Interval E-value
NarG COG5013
Nitrate reductase alpha subunit [Energy production and conversion, Inorganic ion transport and ...
 1-91 3.90e-53

Nitrate reductase alpha subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 444037 [Multi-domain]  Cd Length: 1231  Bit Score: 176.93  E-value: 3.90e-53
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2428895476    1 CRPVTGWSTLAFGLDWQRPPRQMQGTVFWYLATDQWRYDRFTSEAMASPLADGRFAGRTAADNIALASRLGWMPSYPTFN 80
Cdd:COG5013    579 LRPQTGWQPLAFALDWSRPPRQMNGTSFFYAHTDQWRYETLSADELLSPLADGKFWGGHLADYNVRAARLGWLPSYPQFN 658

                           90
                   ....*....|.
gi 2428895476   81 RNPLDLVDEAA 91
Cdd:COG5013    659 RNPLDLADEAE 669
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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