|
Name |
Accession |
Description |
Interval |
E-value |
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
339-678 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 569.00 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 339 LNKNATFDTFVPGDSNRFARTVALAVAEGSGKDFNPLCIYGGSGLGKTHLLNAIGNYALVKDSSLKVRYVTSEEFTNEFI 418
Cdd:PRK00149 66 LNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFV 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 419 EALQtpnqsQGQIAAFNRRYREVDVLLIDDIQFLGGKEATLEQFFHTFNALYQAGKRIVIASDVAPKNLKGFEARLISRF 498
Cdd:PRK00149 146 NALR-----NNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRF 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 499 ESGLTVDVKPPDLETRIAILRMMASMNRSNIPNDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVSRALAEQTLQDF 578
Cdd:PRK00149 221 EWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 579 FT-TDVEIKPTDIIGQVAKYFHLTFDDLVGRARTKNVALARQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMHAYTRISN 657
Cdd:PRK00149 301 LAaQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEK 380
|
330 340
....*....|....*....|.
gi 2467952511 658 EMQEKQEIYNYVMELTVRLKQ 678
Cdd:PRK00149 381 LLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
299-676 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 527.87 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 299 ASRPSAPQPTATRPSAQPMPQPvssfevddqkTTRDPETHLNKNATFDTFVPGDSNRFARTVALAVAEGSGKDFNPLCIY 378
Cdd:TIGR00362 74 GEDEEELEPNSKKPEPAPPEAP----------APPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIY 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 379 GGSGLGKTHLLNAIGNYALVKDSSLKVRYVTSEEFTNEFIEALQtpnqsQGQIAAFNRRYREVDVLLIDDIQFLGGKEAT 458
Cdd:TIGR00362 144 GGVGLGKTHLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALR-----NNKMEEFKEKYRSVDLLLIDDIQFLAGKERT 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 459 LEQFFHTFNALYQAGKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPDLETRIAILRMMASMNRSNIPNDVLDLIA 538
Cdd:TIGR00362 219 QEEFFHTFNALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 539 ERFTENIRELEGALTRVTAVASLSNQPVSRALAEQTLQDFF-TTDVEIKPTDIIGQVAKYFHLTFDDLVGRARTKNVALA 617
Cdd:TIGR00362 299 KNITSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLrAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRP 378
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 2467952511 618 RQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMHAYTRISNEMQEKQEIYNYVMELTVRL 676
Cdd:TIGR00362 379 RQIAMYLAKELTDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
339-645 |
6.50e-168 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 482.77 E-value: 6.50e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 339 LNKNATFDTFVPGDSNRFARTVALAVAEGSGKDFNPLCIYGGSGLGKTHLLNAIGNYALVKDSSLKVRYVTSEEFTNEFI 418
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 419 EALQTpnqsqGQIAAFNRRYREVDVLLIDDIQFLGGKEATLEQFFHTFNALYQAGKRIVIASDVAPKNLKGFEARLISRF 498
Cdd:COG0593 81 NAIRN-----NTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 499 ESGLTVDVKPPDLETRIAILRMMASMNRSNIPNDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVSRALAEQTLQDF 578
Cdd:COG0593 156 EWGLVVDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDL 235
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2467952511 579 FT-TDVEIKPTDIIGQVAKYFHLTFDDLVGRARTKNVALARQIAMYLAREMTSMSLVDIGEVFGGRDH 645
Cdd:COG0593 236 LRaQKKEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
339-561 |
2.89e-108 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 326.59 E-value: 2.89e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 339 LNKNATFDTFVPGDSNRFARTVALAVAEGSGKDFNPLCIYGGSGLGKTHLLNAIGNYALVKDSSLKVRYVTSEEFTNEFI 418
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 419 EALQTpnqsqGQIAAFNRRYREVDVLLIDDIQFLGGKEATLEQFFHTFNALYQAGKRIVIASDVAPKNLKGFEARLISRF 498
Cdd:pfam00308 81 DAIRD-----NKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRF 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2467952511 499 ESGLTVDVKPPDLETRIAILRMMASMNRSNIPNDVLDLIAERFTENIRELEGALTRVTAVASL 561
Cdd:pfam00308 156 QWGLVTDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSL 218
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
587-676 |
2.18e-36 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 131.48 E-value: 2.18e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 587 PTDIIGQVAKYFHLTFDDLVGRARTKNVALARQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMHAYTRISNEMQEKQEIY 666
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 2467952511 667 NYVMELTVRL 676
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
587-654 |
2.57e-31 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 116.45 E-value: 2.57e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2467952511 587 PTDIIGQVAKYFHLTFDDLVGRARTKNVALARQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMHAYTR 654
Cdd:smart00760 2 IEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
16-337 |
1.01e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.28 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 16 WDDALAVLRQDTSITPRskGWLEGVRPEGVFGPTIVLCVANSATQQALqGELNHA--LLGALKLATGHEmfpaFKIaepE 93
Cdd:PRK07764 516 WPEILAAVPKRSRKTWA--ILLPEATVLGVRGDTLVLGFSTGGLARRF-ASPGNAevLVTALAEELGGD----WQV---E 585
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 94 DETGDPAASAQNSNRNAAAGDGnaaylaSQNFGNRPIPSNQADEnglrnsmtSEEGYDSARSGQVGAPEQTGMNGQARSY 173
Cdd:PRK07764 586 AVVGPAPGAAGGEGPPAPASSG------PPEEAARPAAPAAPAA--------PAAPAPAGAAAAPAEASAAPAPGVAAPE 651
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 174 RHYQPNASRAKTNTPQASQLSFDEPDFSSQQTPAGNGSPEGNQGNAFANPARQSLNGNEGRPYAQPQYEPQYLDRDFKAR 253
Cdd:PRK07764 652 HHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAP 731
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 254 SgnngerndqnfGGGMNGTGSSANSGNTTNWAGTVAPSAQPSQFPASRPSAPQPTATRPSAQPMPQPVSSFEVDDQkTTR 333
Cdd:PRK07764 732 S-----------PAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDE-DRR 799
|
....
gi 2467952511 334 DPET 337
Cdd:PRK07764 800 DAEE 803
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
339-678 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 569.00 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 339 LNKNATFDTFVPGDSNRFARTVALAVAEGSGKDFNPLCIYGGSGLGKTHLLNAIGNYALVKDSSLKVRYVTSEEFTNEFI 418
Cdd:PRK00149 66 LNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFV 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 419 EALQtpnqsQGQIAAFNRRYREVDVLLIDDIQFLGGKEATLEQFFHTFNALYQAGKRIVIASDVAPKNLKGFEARLISRF 498
Cdd:PRK00149 146 NALR-----NNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRF 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 499 ESGLTVDVKPPDLETRIAILRMMASMNRSNIPNDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVSRALAEQTLQDF 578
Cdd:PRK00149 221 EWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 579 FT-TDVEIKPTDIIGQVAKYFHLTFDDLVGRARTKNVALARQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMHAYTRISN 657
Cdd:PRK00149 301 LAaQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEK 380
|
330 340
....*....|....*....|.
gi 2467952511 658 EMQEKQEIYNYVMELTVRLKQ 678
Cdd:PRK00149 381 LLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
299-676 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 527.87 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 299 ASRPSAPQPTATRPSAQPMPQPvssfevddqkTTRDPETHLNKNATFDTFVPGDSNRFARTVALAVAEGSGKDFNPLCIY 378
Cdd:TIGR00362 74 GEDEEELEPNSKKPEPAPPEAP----------APPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIY 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 379 GGSGLGKTHLLNAIGNYALVKDSSLKVRYVTSEEFTNEFIEALQtpnqsQGQIAAFNRRYREVDVLLIDDIQFLGGKEAT 458
Cdd:TIGR00362 144 GGVGLGKTHLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALR-----NNKMEEFKEKYRSVDLLLIDDIQFLAGKERT 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 459 LEQFFHTFNALYQAGKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPDLETRIAILRMMASMNRSNIPNDVLDLIA 538
Cdd:TIGR00362 219 QEEFFHTFNALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 539 ERFTENIRELEGALTRVTAVASLSNQPVSRALAEQTLQDFF-TTDVEIKPTDIIGQVAKYFHLTFDDLVGRARTKNVALA 617
Cdd:TIGR00362 299 KNITSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLrAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRP 378
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 2467952511 618 RQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMHAYTRISNEMQEKQEIYNYVMELTVRL 676
Cdd:TIGR00362 379 RQIAMYLAKELTDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
339-645 |
6.50e-168 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 482.77 E-value: 6.50e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 339 LNKNATFDTFVPGDSNRFARTVALAVAEGSGKDFNPLCIYGGSGLGKTHLLNAIGNYALVKDSSLKVRYVTSEEFTNEFI 418
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 419 EALQTpnqsqGQIAAFNRRYREVDVLLIDDIQFLGGKEATLEQFFHTFNALYQAGKRIVIASDVAPKNLKGFEARLISRF 498
Cdd:COG0593 81 NAIRN-----NTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 499 ESGLTVDVKPPDLETRIAILRMMASMNRSNIPNDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVSRALAEQTLQDF 578
Cdd:COG0593 156 EWGLVVDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDL 235
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2467952511 579 FT-TDVEIKPTDIIGQVAKYFHLTFDDLVGRARTKNVALARQIAMYLAREMTSMSLVDIGEVFGGRDH 645
Cdd:COG0593 236 LRaQKKEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
1-678 |
5.65e-160 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 474.31 E-value: 5.65e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 1 MADESNDPITQAIRIWDDALAVLRQDtSITPRSKGWLEGVRPEGVFGPTIVLCVANSATQQALQGELNHALLGALklatG 80
Cdd:PRK14086 1 MADVQADLAAVWPRVLEQLLGEGDGQ-SVPAKDEAWLKRCQPLALVADTALLAVPNEFAKEVLEGRLAPIISETL----S 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 81 HEMFPAFKIAEPEDETGDPAASAQNSNRNAAAGDgnaaylaSQNFGNRPIPSNQADENGLRNSMTSEegYDSARSGQVGA 160
Cdd:PRK14086 76 RELGRPIRIAITVDPSAGEPAPPPPHARRTSEPE-------LPRPGRRPYEGYGGPRADDRPPGLPR--QDQLPTARPAY 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 161 PEQtgmngqarsYRHYQPNAsraktnTPQASQlsfdepDFSSQQTPAGNgsPEGNQGNAFANPARQSLNGNEGRPYAQPQ 240
Cdd:PRK14086 147 PAY---------QQRPEPGA------WPRAAD------DYGWQQQRLGF--PPRAPYASPASYAPEQERDREPYDAGRPE 203
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 241 YEPQYLDRDFKARSGNNGERNDQNFGGGMNGTGSSANsgnttnwAGTVAPSAQPSQFPASRPSAPQPTATRPSAQPMPQp 320
Cdd:PRK14086 204 YDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHR-------GGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPGPG- 275
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 321 vssfevddqkttrDPETHLNKNATFDTFVPGDSNRFARTVALAVAEGSGKDFNPLCIYGGSGLGKTHLLNAIGNYALVKD 400
Cdd:PRK14086 276 -------------EPTARLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLY 342
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 401 SSLKVRYVTSEEFTNEFIEALQtpnqsQGQIAAFNRRYREVDVLLIDDIQFLGGKEATLEQFFHTFNALYQAGKRIVIAS 480
Cdd:PRK14086 343 PGTRVRYVSSEEFTNEFINSIR-----DGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSS 417
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 481 DVAPKNLKGFEARLISRFESGLTVDVKPPDLETRIAILRMMASMNRSNIPNDVLDLIAERFTENIRELEGALTRVTAVAS 560
Cdd:PRK14086 418 DRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFAS 497
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 561 LSNQPVSRALAEQTLQDFFTTDV--EIKPTDIIGQVAKYFHLTFDDLVGRARTKNVALARQIAMYLAREMTSMSLVDIGE 638
Cdd:PRK14086 498 LNRQPVDLGLTEIVLRDLIPEDSapEITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQ 577
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 2467952511 639 VFgGRDHTTVMHAYTRISNEMQEKQEIYNYVMELTVRLKQ 678
Cdd:PRK14086 578 QF-GRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIKN 616
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
339-561 |
2.89e-108 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 326.59 E-value: 2.89e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 339 LNKNATFDTFVPGDSNRFARTVALAVAEGSGKDFNPLCIYGGSGLGKTHLLNAIGNYALVKDSSLKVRYVTSEEFTNEFI 418
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 419 EALQTpnqsqGQIAAFNRRYREVDVLLIDDIQFLGGKEATLEQFFHTFNALYQAGKRIVIASDVAPKNLKGFEARLISRF 498
Cdd:pfam00308 81 DAIRD-----NKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRF 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2467952511 499 ESGLTVDVKPPDLETRIAILRMMASMNRSNIPNDVLDLIAERFTENIRELEGALTRVTAVASL 561
Cdd:pfam00308 156 QWGLVTDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSL 218
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
339-676 |
6.10e-74 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 245.52 E-value: 6.10e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 339 LNKNATFDTFVPGDSNRFARTVALAVA----EGSGKDFNPLCIYGGSGLGKTHLLNAIGNyaLVKDSSLKVRYVTSEEFT 414
Cdd:PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTkvseQGKGFPFNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVRSELFT 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 415 NEFIEALQTpnqsqGQIAAFNRRYREVDVLLIDDIQFLGGKEATLEQFFHTFNALYQAGKRIVIASDVAPKNLKGFEARL 494
Cdd:PRK12422 182 EHLVSAIRS-----GEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERL 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 495 ISRFESGLTVDVKP-PDLETRIAILRMMASMNrSNIPNDVLDLIAERFTENIRELEGALT----RVtAVASLSNQPVSRA 569
Cdd:PRK12422 257 ISRFEWGIAIPLHPlTKEGLRSFLERKAEALS-IRIEETALDFLIEALSSNVKSLLHALTllakRV-AYKKLSHQLLYVD 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 570 LAEQTLQDFFTTD--VEIKPTDIIGQVAKYFHLTFDDLVGRARTKNVALARQIAMYLAREMTSMSLVDIGEVFgGRDHTT 647
Cdd:PRK12422 335 DIKALLHDVLEAAesVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVF-SRDHST 413
|
330 340 350
....*....|....*....|....*....|
gi 2467952511 648 VMHAYTRISNEMQE-KQEIYNYVMELTVRL 676
Cdd:PRK12422 414 VISSIRAISQKLEEdDRDISMAIQEITKRL 443
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
587-676 |
2.18e-36 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 131.48 E-value: 2.18e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 587 PTDIIGQVAKYFHLTFDDLVGRARTKNVALARQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMHAYTRISNEMQEKQEIY 666
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 2467952511 667 NYVMELTVRL 676
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
587-655 |
1.24e-34 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 125.59 E-value: 1.24e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2467952511 587 PTDIIGQVAKYFHLTFDDLVGRARTKNVALARQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMHAYTRI 655
Cdd:pfam08299 1 IEKIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
587-654 |
2.57e-31 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 116.45 E-value: 2.57e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2467952511 587 PTDIIGQVAKYFHLTFDDLVGRARTKNVALARQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMHAYTR 654
Cdd:smart00760 2 IEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
343-576 |
5.17e-24 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 100.73 E-value: 5.17e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 343 ATFDTFVPGdSNRFARTVALAVAEGSGKDFnpLCIYGGSGLGKTHLLNAIGNYALVKDSSlkVRYVTSEEFTNEFIEALQ 422
Cdd:TIGR03420 12 PTFDNFYAG-GNAELLAALRQLAAGKGDRF--LYLWGESGSGKSHLLQAACAAAEERGKS--AIYLPLAELAQADPEVLE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 423 TPNQSqgqiaafnrryrevDVLLIDDIQFLGGKEATLEQFFHTFNALYQAGKRIVIASDVAPKNLKGFEARLISRFESGL 502
Cdd:TIGR03420 87 GLEQA--------------DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGL 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2467952511 503 TVDVKPPDLETRIAILRMMASMNRSNIPNDVLDLIAERFTENIRELEGALTRVTAvASLSNQ-PVSRALAEQTLQ 576
Cdd:TIGR03420 153 VFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDR-ASLAAKrKITIPFVKEVLA 226
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
372-500 |
4.67e-16 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 75.65 E-value: 4.67e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 372 FNPLCIYGGSGLGKTHLLNAIGNYAlvKDSSLKVRYVTSEEFTNEFIEALQtPNQSQGQIAAFNRRYREVDVLLIDDIQF 451
Cdd:cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL--FRPGAPFLYLNASDLLEGLVVAEL-FGHFLVRLLFELAEKAKPGVLFIDEIDS 95
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 2467952511 452 LG-GKEATLEQFFHTFNALYQAGKRIVIASDVAPKNLKGFEARLISRFES 500
Cdd:cd00009 96 LSrGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDI 145
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
338-480 |
7.51e-14 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 71.74 E-value: 7.51e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 338 HLNKNATFDTFVPGDSNRFARTVALAVAEGsgkDF----NPLCIYGGSGLGKTHLLNAIGNYALVKDssLKVRYVTSEEF 413
Cdd:COG1484 64 RFPAAKTLEDFDFDAQPGLDRRQILELATL---DFiergENLILLGPPGTGKTHLAIALGHEACRAG--YRVRFTTAPDL 138
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2467952511 414 TNEFIEAlqtpnQSQGQIAAFNRRYREVDVLLIDDIQFLGGKEATLEQFFHTFNALYqaGKR-IVIAS 480
Cdd:COG1484 139 VNELKEA-----RADGRLERLLKRLAKVDLLILDELGYLPLDAEGAELLFELISDRY--ERRsTIITS 199
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
338-564 |
2.14e-10 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 61.23 E-value: 2.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 338 HLNKNATFDTFVPGDSNRFARTVALAVAEGSGKdfnPLCIYGGSGLGKTHLLNAIgnYALVKDSSLKVRYVTSEE---FT 414
Cdd:PRK08084 14 YLPDDETFASFYPGDNDSLLAALQNALRQEHSG---YIYLWSREGAGRSHLLHAA--CAELSQRGRAVGYVPLDKrawFV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 415 NEFIEALQtpnqsqgqiaafnrryrEVDVLLIDDIQFLGGKEATLEQFFHTFNALYQAGK-RIVIASDVAPKNLKGFEAR 493
Cdd:PRK08084 89 PEVLEGME-----------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRtRLLITGDRPPRQLNLGLPD 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2467952511 494 LISRFESGLTVDVKPPDLETRIAILRMMASMNRSNIPNDVLDLIAERFTENIRELEGALTRVTAvASLSNQ 564
Cdd:PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDR-ASITAQ 221
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
373-510 |
1.09e-09 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 57.38 E-value: 1.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 373 NPLCIYGGSGLGKTHLLNAIGNYAlvKDSSLKVRYVTSEEFTNEFIEALQ-------TPNQSQGQIA--AFNR-RYREVD 442
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLLliivggkKASGSGELRLrlALALaRKLKPD 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2467952511 443 VLLIDDIQFLGGKEAT-----LEQFFHTFNALYQAGKRIVIASdvapkNLKGFEARLISRFESGLTVDVKPPD 510
Cdd:smart00382 81 VLILDEITSLLDAEQEallllLEELRLLLLLKSEKNLTVILTT-----NDEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
343-548 |
1.62e-09 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 58.45 E-value: 1.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 343 ATFDTFVPGdSNRFARTVALAVAEGSGKDfNPLCIYGGSGLGKTHLLNAIGNYALVKDSSlkVRYVTSeeftnefiealq 422
Cdd:PRK08903 15 PTFDNFVAG-ENAELVARLRELAAGPVAD-RFFYLWGEAGSGRSHLLQALVADASYGGRN--ARYLDA------------ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 423 tpnQSQGQIAAFNRryrEVDVLLIDDIQFLGGKE-ATLeqfFHTFNALYQAGKRI-VIASDVAPKNLKGFEaRLISRFES 500
Cdd:PRK08903 79 ---ASPLLAFDFDP---EAELYAVDDVERLDDAQqIAL---FNLFNRVRAHGQGAlLVAGPAAPLALPLRE-DLRTRLGW 148
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2467952511 501 GLTVDVKPPDLETRIAILRMMASMNRSNIPNDVLDLIAERFTENIREL 548
Cdd:PRK08903 149 GLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSL 196
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
373-497 |
6.60e-09 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 57.48 E-value: 6.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 373 NPLCIYGGSGLGKTHLLNAIGNYaLVKDSSLKVRYVtseeftnEFIEALQTPNQSQGQIAAFNRRYREVDVLLIDDI-QF 451
Cdd:PRK06921 118 NSIALLGQPGSGKTHLLTAAANE-LMRKKGVPVLYF-------PFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLfKP 189
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 2467952511 452 LGGKE-AT---LEQFFHTFNALYQAGKRIVIASDVAPKNLKGFEARLISR 497
Cdd:PRK06921 190 VNGKPrATewqIEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSR 239
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
594-681 |
3.71e-08 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 52.47 E-value: 3.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 594 VAKYFHLTFDDLVGRARTKN-VALARQIAMYLAREMTSMSLVDIGEVFgGRDHTTVMHAYTRISnEMQEKQEIYNYVMEL 672
Cdd:PRK06030 32 LALAFGVSGAEIASPLRGRReVSRIRQIAMYVAHVSLGWPMNEVALAF-GRDRTTVGHACHTVE-DLRDDAAFDARVSVL 109
|
....*....
gi 2467952511 673 TVRLKQHPE 681
Cdd:PRK06030 110 ERIVNSAFT 118
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
375-499 |
6.25e-08 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 54.91 E-value: 6.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 375 LCIYGGSGLGKTHLLNAIGNYALvkDSSLKVRYVTSEEFTNEFIEALQTPNQSQGQIAAFnrrYREVDVLLIDDiqfLGG 454
Cdd:PRK06835 186 LLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTADELIEILREIRFNNDKELEEVYDL---LINCDLLIIDD---LGT 257
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2467952511 455 K---EATLEQFFHTFNALYQAGKRIVIASDVAPKNLKGF-----EARLISRFE 499
Cdd:PRK06835 258 EkitEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTyseriSSRLLGNFT 310
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
341-522 |
9.58e-07 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 50.79 E-value: 9.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 341 KNATFDTFVPGDSNRFARTVALAVAEG---SGKDFNPLCIYGGSGLGKTHLLNAIGNYALVKDssLKVRYVTseefTNEF 417
Cdd:PRK08116 80 RNSTFENFLFDKGSEKAYKIARKYVKKfeeMKKENVGLLLWGSVGTGKTYLAACIANELIEKG--VPVIFVN----FPQL 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 418 IEALQTPNQSQGQIA--AFNRRYREVDVLLIDDIQFLGGKEATLEQFFHTFNALYQAGKRIVIASDVAPKNLK-GFEARL 494
Cdd:PRK08116 154 LNRIKSTYKSSGKEDenEIIRSLVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKnQYGKRI 233
|
170 180
....*....|....*....|....*....
gi 2467952511 495 ISR-FESGLTVDVKPPDLETRIAILRMMA 522
Cdd:PRK08116 234 YDRiLEMCTPVENEGKSYRKEIAKEKLQR 262
|
|
| COG2842 |
COG2842 |
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons]; ... |
377-570 |
1.16e-05 |
|
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons];
Pssm-ID: 442090 [Multi-domain] Cd Length: 254 Bit Score: 47.25 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 377 IYGGSGLGKTHllnAIGNYALVKDSSLKVR---YVTSEEFTNEFIEALQ------TPNQSQGQIAAFNRRYREvdVLLID 447
Cdd:COG2842 55 VYGESGVGKTT---AAREYANRNPNVIYVTaspSWTSKELLEELAEELGipappgTIADLRDRILERLAGTGR--LLIID 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 448 DIQFLGGKeaTLEQFFHTFNALyQAGkrIVIA-SDVAPKNLKGFEaRLISRFesGLTVDVKPPDLETRIAILRMMAsmnr 526
Cdd:COG2842 130 EADHLKPK--ALEELRDIHDET-GVG--VVLIgMERLPAKLKRYE-QLYSRI--GFWVEFKPLSLEDVRALAEAWG---- 197
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2467952511 527 sNIPN-DVLDLIAERFTENIRELEGALTRVTAVASLSN-QPVSRAL 570
Cdd:COG2842 198 -ELTDpDLLELLHRITRGNLRRLDRTLRLAARAAKRNGlTKITLDH 242
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
343-481 |
2.33e-05 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 46.28 E-value: 2.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 343 ATFD-TFVPGDSNRFARTVA-LAVAEgsgkDFNPLCIYGGSGLGKTHLLNAIGNYALVKdsSLKVRYVTSEEFTNEFIEA 420
Cdd:pfam01695 65 EDFDfTFAPGLDQRIVAELAsLSFID----RAQNVVLLGPPGVGKTHLAIALGVEACRA--GYSVRFTSAADLVNQLKRA 138
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2467952511 421 lqtpnQSQGQIAAFNRRYREVDVLLIDDIQFLGGKEATLEQFFHTFNALYQAGKrIVIASD 481
Cdd:pfam01695 139 -----HGDGKLTRKLQQLLKPDVLILDEWGYLPLDQAEANLLFQVISKRYEHRS-IILTSN 193
|
|
| PRK09183 |
PRK09183 |
transposase/IS protein; Provisional |
379-477 |
1.36e-04 |
|
transposase/IS protein; Provisional
Pssm-ID: 181681 Cd Length: 259 Bit Score: 44.31 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 379 GGSGLGKTHLLNAIGnYALVKdSSLKVRYVTSEEFTNEFIEALQtpnqsQGQIAAFNRR----YRevdVLLIDDIQFL-- 452
Cdd:PRK09183 109 GPSGVGKTHLAIALG-YEAVR-AGIKVRFTTAADLLLQLSTAQR-----QGRYKTTLQRgvmaPR---LLIIDEIGYLpf 178
|
90 100
....*....|....*....|....*
gi 2467952511 453 GGKEATLeqFFHTFNALYQAGKRIV 477
Cdd:PRK09183 179 SQEEANL--FFQVIAKRYEKGSMIL 201
|
|
| PRK08181 |
PRK08181 |
transposase; Validated |
336-471 |
2.06e-04 |
|
transposase; Validated
Pssm-ID: 136670 [Multi-domain] Cd Length: 269 Bit Score: 43.76 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 336 ETHLNKNATFDTF----VPGDSNrfARTVALAVAEGSGKDFNPLCIYGGSGLGKTHLLNAIGnYALVkDSSLKVRYVTse 411
Cdd:PRK08181 68 EAHLPPGKTLDSFdfeaVPMVSK--AQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIG-LALI-ENGWRVLFTR-- 141
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 412 efTNEFIEALQTPNQSQGQIAAFNRRYReVDVLLIDDIQFLGGKEATLEQFFHTFNALYQ 471
Cdd:PRK08181 142 --TTDLVQKLQVARRELQLESAIAKLDK-FDLLILDDLAYVTKDQAETSVLFELISARYE 198
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
377-540 |
2.23e-04 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 44.07 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 377 IYGGSGLGKT----HLLNAIGNYALVKDSSLKVRYV-----TSE-----EFTNEFIEALQTPNQSQGQIAAFNRRYREVD 442
Cdd:COG1474 56 IYGPTGTGKTavakYVLEELEEEAEERGVDVRVVYVncrqaSTRyrvlsRILEELGSGEDIPSTGLSTDELFDRLYEALD 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 443 ------VLLIDDIQFLGGKEATleqffhtfNALYQ--------AGKR---IVIASDvaPKNLKGFEARLISRFeSGLTVD 505
Cdd:COG1474 136 erdgvlVVVLDEIDYLVDDEGD--------DLLYQllraneelEGARvgvIGISND--LEFLENLDPRVKSSL-GEEEIV 204
|
170 180 190
....*....|....*....|....*....|....*..
gi 2467952511 506 VKPPDLETRIAILRMMASM--NRSNIPNDVLDLIAER 540
Cdd:COG1474 205 FPPYDADELRDILEDRAELafYDGVLSDEVIPLIAAL 241
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
339-449 |
3.94e-04 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 42.51 E-value: 3.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 339 LNKNATFDTF-VPGDSNRFARTVALAVAEGSGKDFNPLCIYGGSGLGKTHLLNAIGNYALVKDSSLKVRYVTseeftnEF 417
Cdd:PRK12377 67 LHRKCSFANYqVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP------DV 140
|
90 100 110
....*....|....*....|....*....|..
gi 2467952511 418 IEALQTPNQSQGQIAAFNRRYREVDVLLIDDI 449
Cdd:PRK12377 141 MSRLHESYDNGQSGEKFLQELCKVDLLVLDEI 172
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
341-449 |
4.12e-04 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 42.93 E-value: 4.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 341 KNATFDTFvpgDSNRFARTVALAVAEGSGKDFNP------LCIYGGSGLGKTHLLNAIGNYalvkdssLKVRYVTS---- 410
Cdd:PRK08939 122 LQASLADI---DLDDRDRLDALMAALDFLEAYPPgekvkgLYLYGDFGVGKSYLLAAIANE-------LAKKGVSStllh 191
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2467952511 411 -EEFTNEFIEALQTpNQSQGQIaafnRRYREVDVLLIDDI 449
Cdd:PRK08939 192 fPEFIRELKNSISD-GSVKEKI----DAVKEAPVLMLDDI 226
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
339-449 |
8.05e-04 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 41.68 E-value: 8.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 339 LNKNATFDTF-VPGDSNRFARTVALAVAEGSGKDFNPLCIYGGSGLGKTHLLNAIGNYALVKDSSlkVRYVTSEEFTNEF 417
Cdd:PRK07952 65 LHQNCSFENYrVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKS--VLIITVADIMSAM 142
|
90 100 110
....*....|....*....|....*....|..
gi 2467952511 418 IEALQTPNQSQGQIAafnRRYREVDVLLIDDI 449
Cdd:PRK07952 143 KDTFSNSETSEEQLL---NDLSNVDLLVIDEI 171
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
375-468 |
8.87e-04 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 40.02 E-value: 8.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 375 LCIYGGSGLGKTHLLNAIGN-YALVKDSSLKVR---YVTSEEFTNEFIEALQTPNQSQGQIAAF--------NRRYREVd 442
Cdd:pfam13401 8 LVLTGESGTGKTTLLRRLLEqLPEVRDSVVFVDlpsGTSPKDLLRALLRALGLPLSGRLSKEELlaalqqllLALAVAV- 86
|
90 100
....*....|....*....|....*.
gi 2467952511 443 VLLIDDIQFLggKEATLEQFFHTFNA 468
Cdd:pfam13401 87 VLIIDEAQHL--SLEALEELRDLLNL 110
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
370-627 |
9.01e-04 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 41.78 E-value: 9.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 370 KDFNPLC-IYGGSGLGKTHLLNAIGNYALVKDSSLKVRYVTSEEFT-NEFIEALQTPnqsqgqiaAF--NRRyrevdVLL 445
Cdd:COG1466 1 KKLAPVYlLYGEEPLLIDEAADALRAAALAEDDGFNRTRLDGAETDwAELLDEAQTL--------SLfgERR-----LVI 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 446 IDDIQFLGGKEATLEQFFHTFNALyQAGKRIVIASDVAPKNLKgfearLISRFE-SGLTVDVKPPDLETRIAILRMMASM 524
Cdd:COG1466 68 VRNAEFLKKPGEGLEALEAYLANP-PPDTVLVLTAGKLDKRKK-----LFKALEkAGVVVECYPLKERELPAWIRQRLKA 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 525 NRSNIPNDVLDLIAERFTENIRELEGALTRVtAVASLSNQPVSRAlaeqtlqdffttDVEikptDIIGQVAKYfhlTFDD 604
Cdd:COG1466 142 AGLRIDPDAAQLLAERVGGDLLALAQELEKL-ALYAGDGGTITLE------------DVE----ALVGDSAEF---NVFD 201
|
250 260
....*....|....*....|...
gi 2467952511 605 LVGRARTKNVALARQIAMYLARE 627
Cdd:COG1466 202 LADALLAGDAARALRILRRLLAE 224
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
16-337 |
1.01e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.28 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 16 WDDALAVLRQDTSITPRskGWLEGVRPEGVFGPTIVLCVANSATQQALqGELNHA--LLGALKLATGHEmfpaFKIaepE 93
Cdd:PRK07764 516 WPEILAAVPKRSRKTWA--ILLPEATVLGVRGDTLVLGFSTGGLARRF-ASPGNAevLVTALAEELGGD----WQV---E 585
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 94 DETGDPAASAQNSNRNAAAGDGnaaylaSQNFGNRPIPSNQADEnglrnsmtSEEGYDSARSGQVGAPEQTGMNGQARSY 173
Cdd:PRK07764 586 AVVGPAPGAAGGEGPPAPASSG------PPEEAARPAAPAAPAA--------PAAPAPAGAAAAPAEASAAPAPGVAAPE 651
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 174 RHYQPNASRAKTNTPQASQLSFDEPDFSSQQTPAGNGSPEGNQGNAFANPARQSLNGNEGRPYAQPQYEPQYLDRDFKAR 253
Cdd:PRK07764 652 HHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAP 731
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2467952511 254 SgnngerndqnfGGGMNGTGSSANSGNTTNWAGTVAPSAQPSQFPASRPSAPQPTATRPSAQPMPQPVSSFEVDDQkTTR 333
Cdd:PRK07764 732 S-----------PAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDE-DRR 799
|
....
gi 2467952511 334 DPET 337
Cdd:PRK07764 800 DAEE 803
|
|
| |
