|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-343 |
1.32e-117 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 343.73 E-value: 1.32e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 1 MNPIIWSLLMMSLATGTIITMSSHHWLLAWIGLEINTMAMIPIISNQHHPRATEAGTKYFLTQAAASALIMFSSITNAWT 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 81 TNQWDITQLTNPQASMMLTLAIAMKLGLVPTHFWFPEVMQGTTIYTALIISTWQKLAPMTLLYMTSNHLHTTTLLTLSLL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 161 STTFGGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYIMMTTAMFFTLMTTLTKTIADMGTAWSYSPTT 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 241 LSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLRMAYFTTMTIPPTPTTISHKWRFPLT 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
330 340
....*....|....*....|...
gi 2486711078 321 PKPLMPLMIMMSSLLLPLTPIIY 343
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMIL 343
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-273 |
2.75e-19 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 86.60 E-value: 2.75e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 23 SHHWLLAWIGLEINTMAMIPII-SNQHHPRATEAGTKYFLTQAAASALIMFSSITNAWTTNQWDITQLTNPQASM----- 96
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 97 ------MLTLAIAMKLGLVPTHFWFPEVMQGT-TIYTALIISTWQKLAP-----MTLLYMTSNHLHTTTLLTLSLLSTTF 164
Cdd:pfam00361 81 llllflLILVGFLFKSAQVPFHTWLPDAYEGApTPVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 165 GGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNL----TLLTMTLYIMMTTAMF-----FTLMTTLTKTIADMGTAWS 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|....*...
gi 2486711078 236 YSPTTLSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSS 273
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAA 278
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
8-295 |
6.17e-16 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 78.62 E-value: 6.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 8 LLMMSLATGTIITMSSHHWLLAWIGLEINTMAMIPIIS-NQHHPRATEAGTKYFLTQAAASALIMF-SSITNAWT--TNQ 83
Cdd:COG1007 106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGATgsLNL 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 84 WDITQL--TNPQASMMLTLAIAM-------KLGLVPTHFWFPEVMQGTTIYTALIISTWQKLAPMTLLY-------MTSN 147
Cdd:COG1007 186 AGIAAAlaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllveafPGLA 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 148 HLHTTTLLTLSLLSTTFGGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYIM----MTTAMFFTLM--- 220
Cdd:COG1007 266 ADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLaylfMNLGAFAVILlls 345
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2486711078 221 --TTLTKTIADM-GTAWSySPTTLSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLR 295
Cdd:COG1007 346 rkGGEAEEIEDLaGLARR-SPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-297 |
7.50e-16 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 78.07 E-value: 7.50e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 8 LLMMSLATGTIITMSSHHWLLAWIGLEINTMAMIPIISNQHHPR-ATEAGTKYFLTQAAASALIMFSSITNAWTTNQWDI 86
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRfSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 87 TQLTNPQASMMLT------------LAIAMKLGLVPTHFWFPEVMQGTTIYTALIISTWQKLA---PMTLLYMTS----N 147
Cdd:TIGR01770 186 EDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYIlfgfS 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 148 HLHTTTLLTLSLLSTTFGGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYIMM---TTAMFFTLMTTL- 223
Cdd:TIGR01770 266 EAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIyalMSLGAFGVLSLLr 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 224 ------TKTIADMGTAWSYSPTTLSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLRMA 297
Cdd:TIGR01770 346 sykdewIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-343 |
1.32e-117 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 343.73 E-value: 1.32e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 1 MNPIIWSLLMMSLATGTIITMSSHHWLLAWIGLEINTMAMIPIISNQHHPRATEAGTKYFLTQAAASALIMFSSITNAWT 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 81 TNQWDITQLTNPQASMMLTLAIAMKLGLVPTHFWFPEVMQGTTIYTALIISTWQKLAPMTLLYMTSNHLHTTTLLTLSLL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 161 STTFGGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYIMMTTAMFFTLMTTLTKTIADMGTAWSYSPTT 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 241 LSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLRMAYFTTMTIPPTPTTISHKWRFPLT 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
330 340
....*....|....*....|...
gi 2486711078 321 PKPLMPLMIMMSSLLLPLTPIIY 343
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMIL 343
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-345 |
1.84e-105 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 312.63 E-value: 1.84e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 1 MNPIIWSLLMMSLATGTIITMSSHHWLLAWIGLEINTMAMIPIISNQHHPRATEAGTKYFLTQAAASALIMFSSITNAWT 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 81 TNQWDITQLTNPQASMMLTLAIAMKLGLVPTHFWFPEVMQGTTIYTALIISTWQKLAPMTLLYMTSNHLHTTTLLTLSLL 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 161 STTFGGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYIMMTTAMFFTLMTTLTKTIADMGTAWSYSPTT 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 241 LSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLRMAYFTTMTIPPTPTTISHKWRFPLT 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320
|
330 340
....*....|....*....|....*
gi 2486711078 321 PKPLMPLMIMMSSLLLPLTPIIYNF 345
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNL 345
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
1.06e-104 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 310.97 E-value: 1.06e-104
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 1 MNPIIWSLLMMSLATGTIITMSSHHWLLAWIGLEINTMAMIPIISNQHHPRATEAGTKYFLTQAAASALIMFSSITNAWT 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 81 TNQWDITQLTNPQASMMLTLAIAMKLGLVPTHFWFPEVMQGTTIYTALIISTWQKLAPMTLLYMTSNHLHTTTLLTLSLL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 161 STTfGGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYIMMTTAMFFTLMTTLTKTIADMGTAWSYSPTT 240
Cdd:MTH00135 161 TLV-GGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 241 LSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLRMAYFTTMTIPPTPTTISHKWRFPlT 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLP-S 318
|
330 340
....*....|....*....|....*....
gi 2486711078 321 PKPLMPL--MIMMSSLLLPLTPIIYNFTT 347
Cdd:MTH00135 319 TQLTLPLaiSTTATLMLLPLTPAILALLT 347
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-342 |
2.64e-89 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 271.72 E-value: 2.64e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 1 MNPIIWSLLMMSLATGTIITMSSHHWLLAWIGLEINTMAMIPIISNQHHPRATEAGTKYFLTQAAASALIMFSSITNAWT 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 81 TNQWDITQLTNPQASMMLTLAIAMKLGLVPTHFWFPEVMQGTTIYTALIISTWQKLAPMTLLYMTSNHLHTTTLLTLSLL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 161 STTFGGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYIMMTTAMFFTLMTTLTKTIADMGTAWSYSPTT 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 241 LSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLRMAYFTTMTIPPTPTTISHKWRFPLT 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|...
gi 2486711078 321 -PKPLMPLMIMMSSLLLPLTPII 342
Cdd:MTH00105 321 kPMTLLPTLIILSTMLLPLTPML 343
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-347 |
2.79e-76 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 238.33 E-value: 2.79e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 1 MNPIIWSLLMMSLATGTIITMSSHHWLLAWIGLEINTMAMIPIISNQHHPRATEAGTKYFLTQAAASALIMFSSITNAWT 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 81 TNQWDITQLTNPQASMMLTLAIAMKLGLVPTHFWFPEVMQGTTIYTALIISTWQKLAPMTLLYMTSNHLHTTTLLTLSLL 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 161 STTFGGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYIMMTTAMFFTLMTTLTKTIADMGTAWSYSPTT 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 241 LSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLRMAYFTTMTIPPTPTTISHKWRFPLT 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
|
330 340
....*....|....*....|....*..
gi 2486711078 321 PKPLMPLMIMMSSLLLPLTPIIYNFTT 347
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLFF 347
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-345 |
5.06e-74 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 232.51 E-value: 5.06e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 1 MNPIIWSLLMMSLATGTIITMSSHHWLLAWIGLEINTMAMIPIISNQHHPRATEAGTKYFLTQAAASALIMFSSITNAWT 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 81 TNQWDITQLTNPQASMMLTLAIAMKLGLVPTHFWFPEVMQGTTIYTALIISTWQKLAPMTLLYMTSNHLHTTTLLTLSLL 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 161 STTFGGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYIMMTTAMFFTLMTTLTKTIADMGTAWSYSPTT 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 241 LSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLRMAYFTTMTIPPTPTTISHKWRFPLT 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320
|
330 340
....*....|....*....|....*...
gi 2486711078 321 PKPLM---PLMIMMSSLLLPLTPIIYNF 345
Cdd:MTH00041 321 ITVYGvilSILSSISILGLLLIPLFLSF 348
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
7-338 |
2.25e-41 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 146.95 E-value: 2.25e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 7 SLLMMSLATGTIITMSSHHWLLAWIGLEINTMAMIPIISNQHHPRATEAGTKYFLTQAAASALIMFSSITNAWTTNQWDI 86
Cdd:MTH00144 7 LLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 87 tqltnpqaSMMLTLAIAMKLGLVPTHFWFPEVMQGTTIYTALIISTWQKLAPMTLLYMT-SNHLHTTTLLTLSLLSTTFG 165
Cdd:MTH00144 87 --------MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFlDLYWLAYLLCVISVLSALVG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 166 GISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYIMMTTAMFFTLMTTLTKTIADMGTAwSYSPTTLSLTM 245
Cdd:MTH00144 159 SIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSL-KPSYKTGLSII 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 246 LTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLRMAYFTTMTIPPTPTTISHKWRFpltpKPLM 325
Cdd:MTH00144 238 SLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLN----SSII 313
|
330
....*....|...
gi 2486711078 326 PLMIMMSSLLLPL 338
Cdd:MTH00144 314 SLNLLGGLLFLLL 326
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-345 |
2.84e-41 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 146.89 E-value: 2.84e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 1 MNPIIWSLLMMSLATGTIITMSSHHWLLAWIGLEINTMAMIPIISNQHHPRATEAGTKYFLTQAAASALIMFSSITNAWT 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 81 TNqwditqLTNPQASMMLTLAIAMKLGLVPTHFWFPEVMQGTTIYTALIISTWQKLAPMTLLYMTSNHLHTTTLLTLSLL 160
Cdd:MTH00160 82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 161 sttFGGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYIMMTTAMFFTLMTTLTKTIADMGTAWSYSPTT 240
Cdd:MTH00160 156 ---IGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 241 LSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLRMAYFTTMTIPPTPTTISHKwrFPLT 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK--KKNK 310
|
330 340
....*....|....*....|....*
gi 2486711078 321 PKPLMPLMIMMSSLLLPLTPIIYNF 345
Cdd:MTH00160 311 FSLILNFLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
7-296 |
7.39e-39 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 140.69 E-value: 7.39e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 7 SLLMMSLATGTIITMSSHHWLLAWIGLEINTMAMIPIISNQHHPRATEAGTKYFLTQAAASALIMFSSITNAWTTNQWDI 86
Cdd:MTH00011 9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLKN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 87 TqltnpqASMMLTLAIAMKLGLVPTHFWFPEVMQGTTIYTALIISTWQKLAPMTLLYMTSNHLHTTTLLTLSLLSTTFGG 166
Cdd:MTH00011 89 I------TALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 167 ISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYIMMTTAMFFTLMTTLTKTIADMGTAWSYSPTTLSLTML 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 2486711078 247 TLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLRM 296
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNL 292
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
7-341 |
8.45e-29 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 113.61 E-value: 8.45e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 7 SLLMMSLATGTIITMSSHHWLLAWIGLEINTMAMIPIISNQHHPRATEAGTKYFLTQAAASALIMFSSITNAWTTnqwdi 86
Cdd:MTH00197 1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 87 tqLTNPQASMMLTLAIAMKLGLVPTHFWFPEVMQGTTIYTALIISTWQKLAPMTLLymTSNHLHTTTLLTLSLLSTTFGG 166
Cdd:MTH00197 76 --YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGG 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 167 ISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYIMMTTAMFFTLMTTLTKTIADMGTAWSYSPTTLSLTML 246
Cdd:MTH00197 152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 247 TLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLRMAYfttMTIPPTPTTISHKWRFPLTPKPLMP 326
Cdd:MTH00197 232 SFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY---KSLILSNWMINFLMKINLLYSGLFI 308
|
330
....*....|....*
gi 2486711078 327 LMIMMSSLLLPLTPI 341
Cdd:MTH00197 309 LLMMMLPLLMIFTMI 323
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-273 |
2.75e-19 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 86.60 E-value: 2.75e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 23 SHHWLLAWIGLEINTMAMIPII-SNQHHPRATEAGTKYFLTQAAASALIMFSSITNAWTTNQWDITQLTNPQASM----- 96
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 97 ------MLTLAIAMKLGLVPTHFWFPEVMQGT-TIYTALIISTWQKLAP-----MTLLYMTSNHLHTTTLLTLSLLSTTF 164
Cdd:pfam00361 81 llllflLILVGFLFKSAQVPFHTWLPDAYEGApTPVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 165 GGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNL----TLLTMTLYIMMTTAMF-----FTLMTTLTKTIADMGTAWS 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqaAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|....*...
gi 2486711078 236 YSPTTLSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSS 273
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAA 278
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
7-295 |
2.45e-16 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 79.48 E-value: 2.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 7 SLLMMSLAtGTIITMSSHHWLLAWIGLEINTMAMIPIIS-NQHHPRATEAGTKYFLTQAAASALIM-------------- 71
Cdd:PRK05777 107 LLVLFALL-GMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgsls 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 72 FSSITNAWTTNQWDITQLTnpQASMMLTLAIAMKLGLVPTHFWFPEVMQGTTIYTALIISTWQKLAPMTLL-------YM 144
Cdd:PRK05777 186 FAGIAKALADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvaFG 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 145 TSNHLHTTTLLTLSLLSTTFGGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYI---MMTTAMFFTLMT 221
Cdd:PRK05777 264 GLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLlayLFMTLGAFGVIS 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 222 TLTK------TIADM-GTAWSySPTTLSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYL 294
Cdd:PRK05777 344 LLRRkggeaeSISDFaGLSKR-SPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYL 422
|
.
gi 2486711078 295 R 295
Cdd:PRK05777 423 R 423
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
6-296 |
3.57e-16 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 79.29 E-value: 3.57e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 6 WSLLMMSLATGTIITMSSHHWLLAWIGLEINTMAM-IPIISNQHHPRATEAGTKYFLTQAAASALIMFSSI----TNAWT 80
Cdd:MTH00199 99 SPILILIVALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCAllygLTGET 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 81 TNQWDITQLTNPQASMMLTLAIAMKLGLVPTHFWFPEVMQGTTIYTALIISTWQKLAPMTLLYMTSnhLHTTTLLTLSLL 160
Cdd:MTH00199 179 SIQGINSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIG--PVTNVVLICAVL 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 161 STTFGGISGLNQTQTRKILAYSSIAHMGW----LTMALLLNQNLTLLTMTLYIMMTTAMFFTLMT-TLTKT-IADMGTAW 234
Cdd:MTH00199 257 SIIYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSlKLTKGlIVEVSGLS 336
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2486711078 235 SYSPTTLSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLRM 296
Cdd:MTH00199 337 RKNPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
8-295 |
6.17e-16 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 78.62 E-value: 6.17e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 8 LLMMSLATGTIITMSSHHWLLAWIGLEINTMAMIPIIS-NQHHPRATEAGTKYFLTQAAASALIMF-SSITNAWT--TNQ 83
Cdd:COG1007 106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGATgsLNL 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 84 WDITQL--TNPQASMMLTLAIAM-------KLGLVPTHFWFPEVMQGTTIYTALIISTWQKLAPMTLLY-------MTSN 147
Cdd:COG1007 186 AGIAAAlaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrllveafPGLA 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 148 HLHTTTLLTLSLLSTTFGGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYIM----MTTAMFFTLM--- 220
Cdd:COG1007 266 ADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLaylfMNLGAFAVILlls 345
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2486711078 221 --TTLTKTIADM-GTAWSySPTTLSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLR 295
Cdd:COG1007 346 rkGGEAEEIEDLaGLARR-SPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLR 422
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
8-297 |
7.50e-16 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 78.07 E-value: 7.50e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 8 LLMMSLATGTIITMSSHHWLLAWIGLEINTMAMIPIISNQHHPR-ATEAGTKYFLTQAAASALIMFSSITNAWTTNQWDI 86
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSRfSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 87 TQLTNPQASMMLT------------LAIAMKLGLVPTHFWFPEVMQGTTIYTALIISTWQKLA---PMTLLYMTS----N 147
Cdd:TIGR01770 186 EDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYIlfgfS 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 148 HLHTTTLLTLSLLSTTFGGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYIMM---TTAMFFTLMTTL- 223
Cdd:TIGR01770 266 EAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIyalMSLGAFGVLSLLr 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 224 ------TKTIADMGTAWSYSPTTLSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLRMA 297
Cdd:TIGR01770 346 sykdewIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
13-296 |
6.60e-15 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 74.68 E-value: 6.60e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 13 LATGTIITMSSHHWLLAWIGLEINTMAM-IPIISNQHHPRATEAGTKYFLTQAAASALIMFS-------------SITNA 78
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 79 WTTNQWDITQLTNPQASMMLTLAIAMKLGLVPTHFWFPEVMQGTTIYTALIISTWQKLAPMTLLYMTSNHLHTTTLLTLS 158
Cdd:MTH00196 82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 159 LLSTtfGGISGLNQTQTRKILAYSSIAHMGW----LTMALLLNQNLTLLTMTLYIMMTTAMFFTLMT--TLTKTIADMGT 232
Cdd:MTH00196 162 SLFV--GAIGALNQTKIKRLLAYSGIGHMGFvlwgIEIGSFESIQASLVYLFIYIIMSICVFSIILAlnVYKNLIIEFSG 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2486711078 233 AWSYSPTTLSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLRM 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
9-223 |
3.22e-09 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 58.33 E-value: 3.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 9 LMMSLATGTIITMSSHHWLLAWIGLEINTMAMIPIISNQHHPRAT---------EAGTKYFLTQAAASALIMFS-SITNA 78
Cdd:MTH00198 193 LVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGcALYFG 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 79 WTTNQ----------WDITQLTNPQASM---MLTLAIAMKLGLVPTHFWFPEVMQGTTIYTALIISTWQKLAPMTLLymT 145
Cdd:MTH00198 273 FTGNEgmlgtilsatLETTNIELRQGSLgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--T 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 146 SNHLHTTTLLTLSLLSTTFGGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYI---MMTTAMFFTLMTT 222
Cdd:MTH00198 351 SLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAvtyLVSALASFTVICT 430
|
.
gi 2486711078 223 L 223
Cdd:MTH00198 431 L 431
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
9-296 |
8.47e-09 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 56.69 E-value: 8.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 9 LMMSLATGTIITMsshhwllaWIGLEINTMAMIPIISNQHHPRATEAGTKYFLTQAAASALIMFSSITNAWTTNQWDITQ 88
Cdd:COG0651 120 MNGAFLTGDLFNL--------FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMAD 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 89 LTNPQASM----------MLTLAIAMKLGLVPTHFWFPE---------------VMQGTTIYTALIISTwqklapmTLLY 143
Cdd:COG0651 192 LAARLAELdpglllaafaLLLVGFGIKAALFPLHFWLPDaypaapspvsallsgLLTKVGVYAILRVLT-------LLFG 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 144 MTSNHLHTTTLLTLSLLSTTFGGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYI----MMTTAMFFT- 218
Cdd:COG0651 265 ADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAa 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 219 ---LMTTLTKTIADMGTAWSYSPTTLSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLR 295
Cdd:COG0651 345 gaiERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVR 424
|
.
gi 2486711078 296 M 296
Cdd:COG0651 425 I 425
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
9-298 |
5.40e-05 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 44.93 E-value: 5.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 9 LMMSLATGTIITMSSHHWLLAWIGLEINTMAMIPIISNQHHPRATEAGTKYFLTQAAASALIMFSSI----TNAWTTNQW 84
Cdd:TIGR01972 111 LLLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILglyfLGGGTFDLL 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 85 DITQLTNPQASMMLT-----LAIAMKLGLVPTHFWFPEVM-QGTTIYTALIISTWQKLAPMTL------LYMTSNHLHTT 152
Cdd:TIGR01972 191 ELLNLPLPFGVQTWLflaffIAFAVKVPLFPLHTWLPDAHvEAPTAGSVILAGVLLKMGTYGFlrfnlpLFPDASLYFAP 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 153 TLLTLSLLSTTFGGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYIM---MTTAMFFTLMTTL-----T 224
Cdd:TIGR01972 271 VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMIshgLITAALFLLVGVLyerahT 350
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2486711078 225 KTIADMGTAWSYSPTTLSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTT---SSIIIALSSLPSLFFYLRMAY 298
Cdd:TIGR01972 351 RDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVaflAALGIVLAAAYMLTLYKRVFF 427
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
50-215 |
8.90e-04 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 41.19 E-value: 8.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 50 PRATEAGTKYFLTQAAASALIMF---------------SSITNAWTTNQWDITQLtnpqaSMMLTLA-IAMKLGLVPTHF 113
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgssllyglsggstqlSAIALALITSPSLGLAL-----ALVFVIAgIAFKISAVPFHQ 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 114 WFPEVMQGTTIYTALIISTWQKLAP-------MTLLYMTSNHLHTTTLLTLSLLSTTFGGISGLNQTQTRKILAYSSIAH 186
Cdd:PRK02504 232 WTPDVYEGSPTPVVAFLSVGSKAAGfalairlLVTAFPSFDEQWKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQ 311
|
170 180
....*....|....*....|....*....
gi 2486711078 187 MGWLTMALLLNQNLTLLTMTLYIMMTTAM 215
Cdd:PRK02504 312 AGFVMIGLVAGTEAGYASMVFYLLAYLFM 340
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
51-191 |
1.04e-03 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 40.76 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 51 RATEAGTKYFLTQAAASAL---------------IMFSSITNAWTTnqwdiTQLTNPQASMM----LTLAIAMKLGLVPT 111
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSIlvygfswlyglsggeIELQEIVNGLIN-----TQMYNSPGISIalifITVGIGFKLSLAPF 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 112 HFWFPEVMQGTTIYTALIISTWQKLAP-------MTLLYMTSNHLHTTTLLTLSLLSTTFGGISGLNQTQTRKILAYSSI 184
Cdd:CHL00049 234 HQWTPDVYEGSPTPVVAFLSVTSKVAAsalatriFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSI 313
|
....*..
gi 2486711078 185 AHMGWLT 191
Cdd:CHL00049 314 GQIGYVI 320
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
97-298 |
6.32e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 38.32 E-value: 6.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 97 MLTLAIAMKLGLVPTHFWFPEVMQGTTIYTALIIS-TWQKLA--PMTLLYMT-------SNHLHTTTLLTLSLLSTTFGG 166
Cdd:PRK08375 207 FVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSgLVTKVAvyALIRIYFTvfggdfrFALGLGWLLAVLALLSMLVGS 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 167 ISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYIM----MTTAMFFTL----MTTLTKTIADMGTAWSYSP 238
Cdd:PRK08375 287 LAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLhhalMKGALFLAAgaieVTYGTRRLSELSGLGRRMP 366
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 239 TTLSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLRMAY 298
Cdd:PRK08375 367 LTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
164-345 |
8.32e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 38.03 E-value: 8.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 164 FGGISGLNQTQTRKILAYSSIAHMGWLTMALLLNQNLTLLTMTLYIM----------MTTAMFftLMTTLTKTIADMGTA 233
Cdd:PRK12667 308 IGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIInhaiaksllfLASGVF--IHAAGTRDIDELAGL 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711078 234 WSYSPTTLSLTMLTLLSLGGLPPLTGFMPKLLILKNMVSSELTTSSIIIALSSLPSLFFYLRMAYFTTMTIPPTPTTISH 313
Cdd:PRK12667 386 GRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEVEH 465
|
170 180 190
....*....|....*....|....*....|..
gi 2486711078 314 KwrfpltPKPLMPLMIMMSSLLLPLTPIIYNF 345
Cdd:PRK12667 466 K------ESPSMSVVILVLALAVLILGILALF 491
|
|
| |
