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Conserved domains on  [gi|2486711079|gb|WGC93725|]
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NADH dehydrogenase subunit 1 [Coleonyx mitratus]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009570)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
1-320 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 214422  Cd Length: 323  Bit Score: 604.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   1 MHQLLNNLINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMP 80
Cdd:MTH00111    1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  81 TMALTLALTIWAPLPMPFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIM 160
Cdd:MTH00111   81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 161 LSGNFSLKSMMETQEPTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMN 240
Cdd:MTH00111  161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 241 TLSCILFMNPSTTT-PQELFPINLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIWHASIPITTAGTP 319
Cdd:MTH00111  241 TLTTILFLNPSTLNlPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320

                  .
gi 2486711079 320 P 320
Cdd:MTH00111  321 P 321
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
1-320 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 604.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   1 MHQLLNNLINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMP 80
Cdd:MTH00111    1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  81 TMALTLALTIWAPLPMPFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIM 160
Cdd:MTH00111   81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 161 LSGNFSLKSMMETQEPTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMN 240
Cdd:MTH00111  161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 241 TLSCILFMNPSTTT-PQELFPINLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIWHASIPITTAGTP 319
Cdd:MTH00111  241 TLTTILFLNPSTLNlPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320

                  .
gi 2486711079 320 P 320
Cdd:MTH00111  321 P 321
NADHdh pfam00146
NADH dehydrogenase;
12-309 2.48e-121

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 350.62  E-value: 2.48e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  12 LMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMPTMALTLALTIW 91
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  92 APLPM--PFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIMLSGNFSLKS 169
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 170 MMETQEPTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMNTLSCILFMN 249
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 250 PSTTTPQELFPINLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIWHA 309
Cdd:pfam00146 243 GWLGPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
2-307 3.38e-108

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 318.23  E-value: 3.38e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   2 HQLLNNLINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMPT 81
Cdd:COG1005     6 APLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPI 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  82 MALTLALTIWAPLPM--PFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTI 159
Cdd:COG1005    86 LAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVV 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 160 MLSGNFSLKSMMETQE-PTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILM 238
Cdd:COG1005   166 LLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFL 245
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2486711079 239 MNTLSCILF----MNPSTTTPQELFP--INLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIW 307
Cdd:COG1005   246 VSALATTLFlggwLGPFPILPLGGLPgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
 
Name Accession Description Interval E-value
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
1-320 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 604.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   1 MHQLLNNLINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMP 80
Cdd:MTH00111    1 MPTLLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  81 TMALTLALTIWAPLPMPFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIM 160
Cdd:MTH00111   81 ILALLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLIL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 161 LSGNFSLKSMMETQEPTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMN 240
Cdd:MTH00111  161 LSGGYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMN 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 241 TLSCILFMNPSTTT-PQELFPINLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIWHASIPITTAGTP 319
Cdd:MTH00111  241 TLTTILFLNPSTLNlPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLP 320

                  .
gi 2486711079 320 P 320
Cdd:MTH00111  321 P 321
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
1-321 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 542.29  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   1 MHQLLNNLINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMP 80
Cdd:MTH00071    1 MMTLISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  81 TMALTLALTIWAPLPMPFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIM 160
Cdd:MTH00071   81 TMALTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLIL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 161 LSGNFSLKSMMETQEPTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMN 240
Cdd:MTH00071  161 LTGGFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMN 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 241 TLSCILFMNPSTTTPQ-ELFPINLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIWHASIPITTAGTP 319
Cdd:MTH00071  241 TLSTILFLGSTYNHLQpELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIP 320

                  ..
gi 2486711079 320 PL 321
Cdd:MTH00071  321 PM 322
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
1-320 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 539.19  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   1 MHQLLNNLINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMP 80
Cdd:MTH00134    2 LSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATP 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  81 TMALTLALTIWAPLPMPFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIM 160
Cdd:MTH00134   82 MLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVII 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 161 LSGNFSLKSMMETQEPTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMN 240
Cdd:MTH00134  162 FTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMN 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 241 TLSCILFMNPSTT-TPQELFPINLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIWHASIPITTAGTP 319
Cdd:MTH00134  242 TLSAILFLGASHIpTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLP 321

                  .
gi 2486711079 320 P 320
Cdd:MTH00134  322 P 322
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
8-320 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 513.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   8 LINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMPTMALTLA 87
Cdd:MTH00104    3 MINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLA 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  88 LTIWAPLPMPFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIMLSGNFSL 167
Cdd:MTH00104   83 LTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTL 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 168 KSMMETQEPTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMNTLSCILF 247
Cdd:MTH00104  163 STLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILF 242
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2486711079 248 MNPS-TTTPQELFPINLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIWHASIPITTAGTPP 320
Cdd:MTH00104  243 LGAFhNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPP 316
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
4-320 2.61e-157

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 442.04  E-value: 2.61e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   4 LLNNLINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMPTMA 83
Cdd:MTH00218    1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  84 LTLALTIWAPLPMPFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIMLSG 163
Cdd:MTH00218   81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 164 NFSLKSMMETQEPTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMNTLS 243
Cdd:MTH00218  161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2486711079 244 CILFMNPSTTTpqelfpINLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIWHASIPITTAGTPP 320
Cdd:MTH00218  241 VILFLGTSLTT------INLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
8-321 1.24e-153

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 433.25  E-value: 1.24e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   8 LINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMPTMALTLA 87
Cdd:MTH00040    7 LINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLA 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  88 LTIWAPLPMPFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIMLSGNFSL 167
Cdd:MTH00040   87 LLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSL 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 168 KSMMETQEPTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMNTLSCILF 247
Cdd:MTH00040  167 SSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVILF 246
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2486711079 248 MNPSTTTpQELFPINLMT---KTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIWHASIPITTAGTPPL 321
Cdd:MTH00040  247 LGGGSPF-NEIFPINIIIvgiKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPPN 322
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
5-304 3.00e-124

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 358.03  E-value: 3.00e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   5 LNNLINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMPTMAL 84
Cdd:MTH00143    1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  85 TLALTIWAPLPMPFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIMLSGN 164
Cdd:MTH00143   81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 165 FSLKSMMETQEPTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMNTLSC 244
Cdd:MTH00143  161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 245 ILFMNPSTTTPQeLFPINLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAM 304
Cdd:MTH00143  241 VLFFGGSSVLFL-LGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
8-313 4.81e-122

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 352.51  E-value: 4.81e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   8 LINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMPTMALTLA 87
Cdd:MTH00195    5 VIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALA 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  88 LTIWAPLPMPFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIMLSGNFSL 167
Cdd:MTH00195   85 LILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDF 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 168 KSMMETQEPTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMNTLSCILF 247
Cdd:MTH00195  165 TIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILF 244
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2486711079 248 MNPSTTtpqelfpINLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIWHASIPI 313
Cdd:MTH00195  245 LGGGGT-------IIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPF 303
NADHdh pfam00146
NADH dehydrogenase;
12-309 2.48e-121

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 350.62  E-value: 2.48e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  12 LMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMPTMALTLALTIW 91
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  92 APLPM--PFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIMLSGNFSLKS 169
Cdd:pfam00146  83 AVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 170 MMETQEPTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMNTLSCILFMN 249
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 250 PSTTTPQELFPINLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIWHA 309
Cdd:pfam00146 243 GWLGPFPLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
4-313 2.12e-120

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 348.30  E-value: 2.12e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   4 LLNNLINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMPTMA 83
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  84 LTLALTIWAPLPMPFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIMLSG 163
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 164 NFSLKSMMETQEPTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMNTLS 243
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 244 CILFMNPStttpqeLFPINLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIWHASIPI 313
Cdd:MTH00193  241 VLMFLGGD------LLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKI 304
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
7-311 3.25e-117

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 340.09  E-value: 3.25e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   7 NLINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMPTMALTL 86
Cdd:MTH00225    3 FLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLIL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  87 ALTIWAPLPMPFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIMLSGNFS 166
Cdd:MTH00225   83 SLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYN 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 167 LKSMMETQEPTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMNTLSCIL 246
Cdd:MTH00225  163 LFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSIL 242
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2486711079 247 FMNPSTttpqELFPINLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIWHASI 311
Cdd:MTH00225  243 FFGGFF----VTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
2-307 3.38e-108

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 318.23  E-value: 3.38e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   2 HQLLNNLINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMPT 81
Cdd:COG1005     6 APLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPI 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  82 MALTLALTIWAPLPM--PFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTI 159
Cdd:COG1005    86 LAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVV 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 160 MLSGNFSLKSMMETQE-PTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILM 238
Cdd:COG1005   166 LLAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFL 245
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2486711079 239 MNTLSCILF----MNPSTTTPQELFP--INLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIW 307
Cdd:COG1005   246 VSALATTLFlggwLGPFPILPLGGLPgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
8-321 4.26e-108

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 317.82  E-value: 4.26e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   8 LINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMPTMALTLA 87
Cdd:MTH00054    5 IIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLA 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  88 LTIWAPLPM--PFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIMLSGNF 165
Cdd:MTH00054   85 FIAWGVIPYgeGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSL 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 166 SLKSMMETQEPTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMNTLSCI 245
Cdd:MTH00054  165 NLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVI 244
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 246 LF----MNPSTTTPQELFPINLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIWHASIPITTAGTPPL 321
Cdd:MTH00054  245 LFlggwLVISGPTSYFSNFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPPF 324
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
1-320 1.26e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 316.68  E-value: 1.26e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   1 MHQLLNNLINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMP 80
Cdd:MTH00216    2 MVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAP 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  81 TMALTLALTIWAPLPMPFPLL--DMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLST 158
Cdd:MTH00216   82 VLSFTLALIVWGVIPYERGVLisDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISV 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 159 IMLSGNFSLKSMMETQ-EPTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNIL 237
Cdd:MTH00216  162 LLCVGSLSITEIVLAQnNGIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHII 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 238 MMNTLSCILFMNPSTTTPQELF--PINLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIWHASIPITT 315
Cdd:MTH00216  242 LMSCLTTILFLGGWLSPIKYFKggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGF 321

                  ....*
gi 2486711079 316 AGTPP 320
Cdd:MTH00216  322 NGPPP 326
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
8-311 4.96e-106

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 312.51  E-value: 4.96e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   8 LINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMPTMALTLA 87
Cdd:PRK06076   13 LLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPA 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  88 LTIWAPLPM--PFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIMLSGNF 165
Cdd:PRK06076   93 FLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSL 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 166 SLKSMMETQEPTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMNTLSCI 245
Cdd:PRK06076  173 NLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITT 252
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 246 LFMN----PSTTTPQELFPINLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIWHASI 311
Cdd:PRK06076  253 LFLGgwlpPFPLGGGIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLLTAAV 322
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
9-315 3.09e-94

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 282.05  E-value: 3.09e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   9 INPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMPTMALTLAL 88
Cdd:MTH00010    7 ISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILAL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  89 TIWAPLPMPFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIMLSGNFSLK 168
Cdd:MTH00010   87 LLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFS 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 169 SMMETQEpTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMNTLSCILFM 248
Cdd:MTH00010  167 KIIMSQY-SWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFT 245
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2486711079 249 npSTTTPQELFPINLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIwhASIPITT 315
Cdd:MTH00010  246 --SFIPSIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLM--ISIPIMF 308
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
9-320 1.23e-92

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 279.21  E-value: 1.23e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   9 INPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMPTMALTLAL 88
Cdd:MTH00029   11 IKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAI 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  89 TIWAPLPMP--FPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIMLSGNFS 166
Cdd:MTH00029   91 LAWAIVTMDqgVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLN 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 167 LKSMMETQEPTWLMLCSWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMNTLSCIL 246
Cdd:MTH00029  171 ISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIF 250
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 247 FMN------PSTTTPQELFPIN-----------LMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIWHA 309
Cdd:MTH00029  251 FLGgwlsplDGIPTPPEAFSIFeqiasskssfwFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTA 330
                         330
                  ....*....|.
gi 2486711079 310 SIPITTAGTPP 320
Cdd:MTH00029  331 GILIGFNGVPP 341
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
12-304 6.59e-71

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 221.31  E-value: 6.59e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  12 LMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMPTMALTLALTIW 91
Cdd:MTH00090    3 LLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEW 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  92 APLPMPFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIMLSGNFSLKSMM 171
Cdd:MTH00090   83 FVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVSSF 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 172 etqepTWLMLCswpLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMNTLSCILFMNps 251
Cdd:MTH00090  163 -----SLSLFV---IYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK-- 232
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2486711079 252 tttpqelfpINLMTKTCLLTLgFLWIRASYPRFRYDQLMHLVWKNFLPLTLAM 304
Cdd:MTH00090  233 ---------FSFLMLFLIFSL-LIFIRSSYPRFRYDMMMSMFWFKFLPLSLIF 275
ndhA CHL00032
NADH dehydrogenase subunit 1
12-302 4.01e-53

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 178.22  E-value: 4.01e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  12 LMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMPTMALTLALTIW 91
Cdd:CHL00032   34 LTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSY 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  92 apLPMPFP----LLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIMLSGNFSL 167
Cdd:CHL00032  114 --LVIPFGyhlvLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLST 191
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 168 KSMMETQEPTWLMlcSWPL------MMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMNT 241
Cdd:CHL00032  192 VDIVEAQSKYGFW--GWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSL 269
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 242 LSCILFMN------PSTTTPqELFPINLMTKTCLLTLG----------FLWI----RASYPRFRYDQLMHLVWKNFLPLT 301
Cdd:CHL00032  270 FVTVLYLGgwnlsiPYIFIP-ELFEINKTGGVFGTTIGifitlaktylFLFIsittRWTLPRLRMDQLLNLGWKFLLPIS 348

                  .
gi 2486711079 302 L 302
Cdd:CHL00032  349 L 349
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
7-302 3.18e-49

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 165.87  E-value: 3.18e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   7 NLINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPNLVGPLGILQPIADGVKLFIKEPIRPTIASPTLFLIMPTMALTL 86
Cdd:MTH00058    3 GLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  87 ALTIWAPLPMPFPLLDMNLGLLFMLAISSLTVYSILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTIMLSGNFS 166
Cdd:MTH00058   83 VVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYS 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 167 LKSMMETQEPTWLMLcsWPLMMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNILMMNTLSCIL 246
Cdd:MTH00058  163 LVDFYYSGWLSVLLF--PLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVL 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2486711079 247 FMNPSTttpqelfpINLMTKTCLLTlgFLWIRASYPRFRYDQLMHLVWKNFLPLTL 302
Cdd:MTH00058  241 FFGGGF--------VSIMLLFHLLF--FMWARATLPRVRYDYFVNFFWEYCLVLLI 286
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
5-307 1.25e-29

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 114.51  E-value: 1.25e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079   5 LNNLINPLMLIIPILIAVAFLTLLERKLLGYMQLRKGPnlvgplGILQPIADGVKLFIKEPIRPTIASPtLFLIMPTMAL 84
Cdd:COG0650     1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASW-LFRAAPYVAL 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079  85 TLALTIWAPLPM-----PFPLLDMNLGLLFMLAISSLTvysILWSGWASNSKYALIGALRAVAQTISYEVTLGIILLSTI 159
Cdd:COG0650    74 AAMLLAALLVPVlttgpPLSFSGDLIVLVYLLALARFF---LALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALA 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2486711079 160 MLSGNFSLKSMMETQEPTWLMLCSWPLMM---MWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYTNI 236
Cdd:COG0650   151 LLAGSTSLSDIVAYQAAHGPLLLSPSLLLaaiAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKL 230
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2486711079 237 LMMNTLSCILFMNPSTTTPQELFPINLMTKTCLLTLGFLWIRASYPRFRYDQLMHLVWKNFLPLTLAMCIW 307
Cdd:COG0650   231 FVLLSLFVNLFLPWGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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