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Conserved domains on  [gi|2516845513|gb|WIP97367|]
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phage head morphogenesis protein [Bordetella pertussis]

Protein Classification

structural protein( domain architecture ID 4421)

phage structural protein may be a minor head or minor capsid protein and may be involved in phage head morphogenesis

Gene Ontology:  GO:0044423|GO:0005198
PubMed:  8497043

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Phage_Mu_F super family cl10072
Phage Mu protein F like protein; Members of this family are found in double-stranded DNA ...
 149-270 9.57e-08

Phage Mu protein F like protein; Members of this family are found in double-stranded DNA bacteriophages, and in some bacteria. A member of this family is required for viral head morphogenesis in bacteriophage SPP1. This family is possibly a minor head protein. This family may be related to the family TT_ORF1 (pfam02956).


The actual alignment was detected with superfamily member pfam04233:

Pssm-ID: 447890  Cd Length: 110  Bit Score: 49.69  E-value: 9.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2516845513 149 IRDAVRMGYVEGQTIQQVVQRVRGtrakayadgLLEIDRRNAEAVVRTAISHTAGFARDRWYDANDDIVGALAWVSTLDS 228
Cdd:pfam04233   3 IRDALTQAIMRGEGYEELAKRLKD---------RMQTSRSRLRTIARTEALRAYNAARYASQAAQKGVGKYKRYSAIKDS 73

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2516845513 229 RTSQMCRLRDGLRYEPDshkpighKVPWGAGPGRLHWQCRST 270
Cdd:pfam04233  74 RTRPIHRALDGKIFKVD-------DPFWGTGAPPEDPNCRCV 108
 
Name Accession Description Interval E-value
Phage_Mu_F pfam04233
Phage Mu protein F like protein; Members of this family are found in double-stranded DNA ...
 149-270 9.57e-08

Phage Mu protein F like protein; Members of this family are found in double-stranded DNA bacteriophages, and in some bacteria. A member of this family is required for viral head morphogenesis in bacteriophage SPP1. This family is possibly a minor head protein. This family may be related to the family TT_ORF1 (pfam02956).


Pssm-ID: 309383  Cd Length: 110  Bit Score: 49.69  E-value: 9.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2516845513 149 IRDAVRMGYVEGQTIQQVVQRVRGtrakayadgLLEIDRRNAEAVVRTAISHTAGFARDRWYDANDDIVGALAWVSTLDS 228
Cdd:pfam04233   3 IRDALTQAIMRGEGYEELAKRLKD---------RMQTSRSRLRTIARTEALRAYNAARYASQAAQKGVGKYKRYSAIKDS 73

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2516845513 229 RTSQMCRLRDGLRYEPDshkpighKVPWGAGPGRLHWQCRST 270
Cdd:pfam04233  74 RTRPIHRALDGKIFKVD-------DPFWGTGAPPEDPNCRCV 108
COG2369 COG2369
Uncharacterized protein, contains phage Mu head morphogenesis gpF-like domain [Mobilome: ...
 146-277 1.73e-06

Uncharacterized protein, contains phage Mu head morphogenesis gpF-like domain [Mobilome: prophages, transposons];


Pssm-ID: 441936 [Multi-domain]  Cd Length: 201  Bit Score: 48.11  E-value: 1.73e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2516845513 146 ASRIRDAVRMGYVEGQTIQQVVQRVRGTRAKAyadGLLEIDRRNAEAVVRTAI--SHTAGfardRWYDANDDIVGALA-- 221
Cdd:COG2369    52 LNDIRAALTQALEEGTTLEEFRKDLEPILAKK---GWGGGSKRRARTIYRTNLrtAYAAG----RWARMQELGVKEARpy 124

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2516845513 222 --WVSTLDSRTSQMCRLRDGLRYEPDshkpighKVPWGAGPGRLHWQCRSTSVPILKG 277
Cdd:COG2369   125 wrYRAVGDERTRPSHRALDGKVLPLD-------DPFWGTHYPPNGWNCRCTVRALSED 175
phageSPP1_gp7 TIGR01641
phage putative head morphogenesis protein, SPP1 gp7 family; This model describes a region of ...
 149-274 9.08e-06

phage putative head morphogenesis protein, SPP1 gp7 family; This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 213641  Cd Length: 108  Bit Score: 44.30  E-value: 9.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2516845513 149 IRDAVRMGYVEGQTIQQVVQRVRGtrakayadgLLEIDRRNAEAVVRTAISHTAGFAR-DRWYDANDDivgaLAWVSTLD 227
Cdd:TIGR01641   1 VEDILADGVQRGLGPNELAKRLRK---------ELGVQKHYAQRLARTETARIYNQTKlERYKKAGPI----YEYIAIID 67

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2516845513 228 SRTSQMCRLRDGLRYEPDShkpighkVPWGAGPGRLHWQCRSTSVPI 274
Cdd:TIGR01641  68 SRTRPICRALNGKIFKVDD-------AVPGVNAPPLHPNCRCTLAPV 107
 
Name Accession Description Interval E-value
Phage_Mu_F pfam04233
Phage Mu protein F like protein; Members of this family are found in double-stranded DNA ...
 149-270 9.57e-08

Phage Mu protein F like protein; Members of this family are found in double-stranded DNA bacteriophages, and in some bacteria. A member of this family is required for viral head morphogenesis in bacteriophage SPP1. This family is possibly a minor head protein. This family may be related to the family TT_ORF1 (pfam02956).


Pssm-ID: 309383  Cd Length: 110  Bit Score: 49.69  E-value: 9.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2516845513 149 IRDAVRMGYVEGQTIQQVVQRVRGtrakayadgLLEIDRRNAEAVVRTAISHTAGFARDRWYDANDDIVGALAWVSTLDS 228
Cdd:pfam04233   3 IRDALTQAIMRGEGYEELAKRLKD---------RMQTSRSRLRTIARTEALRAYNAARYASQAAQKGVGKYKRYSAIKDS 73

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2516845513 229 RTSQMCRLRDGLRYEPDshkpighKVPWGAGPGRLHWQCRST 270
Cdd:pfam04233  74 RTRPIHRALDGKIFKVD-------DPFWGTGAPPEDPNCRCV 108
COG2369 COG2369
Uncharacterized protein, contains phage Mu head morphogenesis gpF-like domain [Mobilome: ...
 146-277 1.73e-06

Uncharacterized protein, contains phage Mu head morphogenesis gpF-like domain [Mobilome: prophages, transposons];


Pssm-ID: 441936 [Multi-domain]  Cd Length: 201  Bit Score: 48.11  E-value: 1.73e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2516845513 146 ASRIRDAVRMGYVEGQTIQQVVQRVRGTRAKAyadGLLEIDRRNAEAVVRTAI--SHTAGfardRWYDANDDIVGALA-- 221
Cdd:COG2369    52 LNDIRAALTQALEEGTTLEEFRKDLEPILAKK---GWGGGSKRRARTIYRTNLrtAYAAG----RWARMQELGVKEARpy 124

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2516845513 222 --WVSTLDSRTSQMCRLRDGLRYEPDshkpighKVPWGAGPGRLHWQCRSTSVPILKG 277
Cdd:COG2369   125 wrYRAVGDERTRPSHRALDGKVLPLD-------DPFWGTHYPPNGWNCRCTVRALSED 175
phageSPP1_gp7 TIGR01641
phage putative head morphogenesis protein, SPP1 gp7 family; This model describes a region of ...
 149-274 9.08e-06

phage putative head morphogenesis protein, SPP1 gp7 family; This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 213641  Cd Length: 108  Bit Score: 44.30  E-value: 9.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2516845513 149 IRDAVRMGYVEGQTIQQVVQRVRGtrakayadgLLEIDRRNAEAVVRTAISHTAGFAR-DRWYDANDDivgaLAWVSTLD 227
Cdd:TIGR01641   1 VEDILADGVQRGLGPNELAKRLRK---------ELGVQKHYAQRLARTETARIYNQTKlERYKKAGPI----YEYIAIID 67

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2516845513 228 SRTSQMCRLRDGLRYEPDShkpighkVPWGAGPGRLHWQCRSTSVPI 274
Cdd:TIGR01641  68 SRTRPICRALNGKIFKVDD-------AVPGVNAPPLHPNCRCTLAPV 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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