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Conserved domains on  [gi|2556888269|gb|WKZ27423|]
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MAG: transcription antitermination factor NusB [Candidatus Paceibacterota bacterium]

Protein Classification

transcription antitermination protein NusB( domain architecture ID 10002503)

transcription antitermination protein NusB (N utilization substance protein B) is a lambda and rRNA transcription antitermination protein which also plays a role in ribosomal RNA biogenesis

CATH:  1.10.940.10
Gene Ontology:  GO:0003723|GO:0031564|GO:0006353
SCOP:  4001076

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NusB COG0781
Transcription antitermination protein NusB [Transcription];
10-140 6.95e-51

Transcription antitermination protein NusB [Transcription];


:

Pssm-ID: 440544 [Multi-domain]  Cd Length: 128  Bit Score: 159.54  E-value: 6.95e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556888269  10 IALQTLYEWDFRDKNeekLDAVIEKNLVEFGTGLDDAQFVRDLIKGVLAHREALDQIIEKAAPAWPLDQIAIVDRNILRL 89
Cdd:COG0781     2 LALQALYQVELSGAY---ANEILEEFLEDEELSEADRAFATELVYGVLRNQEELDALIAPYLKDWPLERLDPVDRAILRL 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2556888269  90 GLYELLFGDRsaVPPKVAINEAIELAKSFGGEASGRFVNGVLGTVYREIGE 140
Cdd:COG0781    79 AAYELLYLDD--VPYKVAINEAVELAKKFGTEDSPKFVNGVLDKIAKELRA 127
 
Name Accession Description Interval E-value
NusB COG0781
Transcription antitermination protein NusB [Transcription];
10-140 6.95e-51

Transcription antitermination protein NusB [Transcription];


Pssm-ID: 440544 [Multi-domain]  Cd Length: 128  Bit Score: 159.54  E-value: 6.95e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556888269  10 IALQTLYEWDFRDKNeekLDAVIEKNLVEFGTGLDDAQFVRDLIKGVLAHREALDQIIEKAAPAWPLDQIAIVDRNILRL 89
Cdd:COG0781     2 LALQALYQVELSGAY---ANEILEEFLEDEELSEADRAFATELVYGVLRNQEELDALIAPYLKDWPLERLDPVDRAILRL 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2556888269  90 GLYELLFGDRsaVPPKVAINEAIELAKSFGGEASGRFVNGVLGTVYREIGE 140
Cdd:COG0781    79 AAYELLYLDD--VPYKVAINEAVELAKKFGTEDSPKFVNGVLDKIAKELRA 127
nusB PRK00202
transcription antitermination factor NusB;
2-138 8.12e-48

transcription antitermination factor NusB;


Pssm-ID: 234686 [Multi-domain]  Cd Length: 137  Bit Score: 151.87  E-value: 8.12e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556888269   2 ASRHLSRSIALQTLYEWDFRDKNEEKLdavIEKNLVEFGTGLDDAQFVRDLIKGVLAHREALDQIIEKAAPAWPLDQIAI 81
Cdd:PRK00202    1 AARRKAREAAVQALYQWELSGNDIAEI---IEAQLLEEQYDKADPAYFRSLVRGVVENQAELDELISPYLKDWTLERLDP 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2556888269  82 VDRNILRLGLYELLFgdRSAVPPKVAINEAIELAKSFGGEASGRFVNGVLGTVYREI 138
Cdd:PRK00202   78 VERAILRLALYELLF--RDDVPYKVVINEAIELAKKFGDEDSHKFVNGVLDKIAKEL 132
nusB TIGR01951
transcription antitermination factor NusB; A transcription antitermination complex active in ...
 4-137 1.90e-47

transcription antitermination factor NusB; A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10. [Transcription, Transcription factors]


Pssm-ID: 273891 [Multi-domain]  Cd Length: 129  Bit Score: 150.72  E-value: 1.90e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556888269   4 RHLSRSIALQTLYEWDFRDkneEKLDAVIEKNLVEFGTGLDDAQFVRDLIKGVLAHREALDQIIEKAAPAWPLDQIAIVD 83
Cdd:TIGR01951   1 RRKARELALQALYQWELSG---EDVDEIIEEFLEERELDEEDREYFRELVRGVLENQEEIDELISPHLEDWTLERLDPVD 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2556888269  84 RNILRLGLYELLFgdRSAVPPKVAINEAIELAKSFGGEASGRFVNGVLGTVYRE 137
Cdd:TIGR01951  78 RAILRLAIYELLY--RPDVPYKVVINEAVELAKKFGDEDSHKFVNGVLDKIAKE 129
NusB pfam01029
NusB family; The NusB protein is involved in the regulation of rRNA biosynthesis by ...
 5-136 1.50e-43

NusB family; The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination.


Pssm-ID: 460031 [Multi-domain]  Cd Length: 133  Bit Score: 140.87  E-value: 1.50e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556888269   5 HLSRSIALQTLYEWDFRDKNEEKLDAVIEKNLVEFGTGLDDAQ---FVRDLIKGVLAHREALDQIIEKAAPAWPLDQIAI 81
Cdd:pfam01029   1 RNARELALQALYQVEINGSDEEEKGAYLNEALDKALEGDLSEEdraFATELVYGVLRNLEELDALIEKLLENWPLERLSP 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2556888269  82 VDRNILRLGLYELLFGDRsaVPPKVAINEAIELAKSFGGEASGRFVNGVLGTVYR 136
Cdd:pfam01029  81 VDRAILRLGLYELLFLDD--VPPHVAINEAVELAKKFGGEKSAKFVNGVLRNVAR 133
Terminator_NusB cd00619
Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key ...
 4-138 2.91e-39

Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation.


Pssm-ID: 238342 [Multi-domain]  Cd Length: 130  Bit Score: 130.09  E-value: 2.91e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556888269   4 RHLSRSIALQTLYEWDFRDKNEEKLDAVIEKnLVEFGTglDDAQFVRDLIKGVLAHREALDQIIEKAAPAWPLDQIAIVD 83
Cdd:cd00619     1 RRRARELAVQALYAWELAPEILAEVVSLLEL-LQYKSK--KVLPFALKLVRGVLENIEEIDELIEKHLRNWSLDRLAIVE 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2556888269  84 RNILRLGLYELLFgdRSAVPPKVAINEAIELAKSFGGEASGRFVNGVLGTVYREI 138
Cdd:cd00619    78 RAILRLAVYELLF--LPDVPHPVVINEAIELAKRFGGDDSHKFVNGVLDKIAKDL 130
 
Name Accession Description Interval E-value
NusB COG0781
Transcription antitermination protein NusB [Transcription];
10-140 6.95e-51

Transcription antitermination protein NusB [Transcription];


Pssm-ID: 440544 [Multi-domain]  Cd Length: 128  Bit Score: 159.54  E-value: 6.95e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556888269  10 IALQTLYEWDFRDKNeekLDAVIEKNLVEFGTGLDDAQFVRDLIKGVLAHREALDQIIEKAAPAWPLDQIAIVDRNILRL 89
Cdd:COG0781     2 LALQALYQVELSGAY---ANEILEEFLEDEELSEADRAFATELVYGVLRNQEELDALIAPYLKDWPLERLDPVDRAILRL 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2556888269  90 GLYELLFGDRsaVPPKVAINEAIELAKSFGGEASGRFVNGVLGTVYREIGE 140
Cdd:COG0781    79 AAYELLYLDD--VPYKVAINEAVELAKKFGTEDSPKFVNGVLDKIAKELRA 127
nusB PRK00202
transcription antitermination factor NusB;
2-138 8.12e-48

transcription antitermination factor NusB;


Pssm-ID: 234686 [Multi-domain]  Cd Length: 137  Bit Score: 151.87  E-value: 8.12e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556888269   2 ASRHLSRSIALQTLYEWDFRDKNEEKLdavIEKNLVEFGTGLDDAQFVRDLIKGVLAHREALDQIIEKAAPAWPLDQIAI 81
Cdd:PRK00202    1 AARRKAREAAVQALYQWELSGNDIAEI---IEAQLLEEQYDKADPAYFRSLVRGVVENQAELDELISPYLKDWTLERLDP 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2556888269  82 VDRNILRLGLYELLFgdRSAVPPKVAINEAIELAKSFGGEASGRFVNGVLGTVYREI 138
Cdd:PRK00202   78 VERAILRLALYELLF--RDDVPYKVVINEAIELAKKFGDEDSHKFVNGVLDKIAKEL 132
nusB TIGR01951
transcription antitermination factor NusB; A transcription antitermination complex active in ...
 4-137 1.90e-47

transcription antitermination factor NusB; A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10. [Transcription, Transcription factors]


Pssm-ID: 273891 [Multi-domain]  Cd Length: 129  Bit Score: 150.72  E-value: 1.90e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556888269   4 RHLSRSIALQTLYEWDFRDkneEKLDAVIEKNLVEFGTGLDDAQFVRDLIKGVLAHREALDQIIEKAAPAWPLDQIAIVD 83
Cdd:TIGR01951   1 RRKARELALQALYQWELSG---EDVDEIIEEFLEERELDEEDREYFRELVRGVLENQEEIDELISPHLEDWTLERLDPVD 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2556888269  84 RNILRLGLYELLFgdRSAVPPKVAINEAIELAKSFGGEASGRFVNGVLGTVYRE 137
Cdd:TIGR01951  78 RAILRLAIYELLY--RPDVPYKVVINEAVELAKKFGDEDSHKFVNGVLDKIAKE 129
NusB pfam01029
NusB family; The NusB protein is involved in the regulation of rRNA biosynthesis by ...
 5-136 1.50e-43

NusB family; The NusB protein is involved in the regulation of rRNA biosynthesis by transcriptional antitermination.


Pssm-ID: 460031 [Multi-domain]  Cd Length: 133  Bit Score: 140.87  E-value: 1.50e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556888269   5 HLSRSIALQTLYEWDFRDKNEEKLDAVIEKNLVEFGTGLDDAQ---FVRDLIKGVLAHREALDQIIEKAAPAWPLDQIAI 81
Cdd:pfam01029   1 RNARELALQALYQVEINGSDEEEKGAYLNEALDKALEGDLSEEdraFATELVYGVLRNLEELDALIEKLLENWPLERLSP 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2556888269  82 VDRNILRLGLYELLFGDRsaVPPKVAINEAIELAKSFGGEASGRFVNGVLGTVYR 136
Cdd:pfam01029  81 VDRAILRLGLYELLFLDD--VPPHVAINEAVELAKKFGGEKSAKFVNGVLRNVAR 133
Terminator_NusB cd00619
Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key ...
 4-138 2.91e-39

Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation.


Pssm-ID: 238342 [Multi-domain]  Cd Length: 130  Bit Score: 130.09  E-value: 2.91e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556888269   4 RHLSRSIALQTLYEWDFRDKNEEKLDAVIEKnLVEFGTglDDAQFVRDLIKGVLAHREALDQIIEKAAPAWPLDQIAIVD 83
Cdd:cd00619     1 RRRARELAVQALYAWELAPEILAEVVSLLEL-LQYKSK--KVLPFALKLVRGVLENIEEIDELIEKHLRNWSLDRLAIVE 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2556888269  84 RNILRLGLYELLFgdRSAVPPKVAINEAIELAKSFGGEASGRFVNGVLGTVYREI 138
Cdd:cd00619    78 RAILRLAVYELLF--LPDVPHPVVINEAIELAKRFGGDDSHKFVNGVLDKIAKDL 130
NusB_Sun cd00447
RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or ...
 8-138 4.98e-34

RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins. This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the N-terminal non-catalytic RNA-binding domain with NusB.


Pssm-ID: 238253 [Multi-domain]  Cd Length: 129  Bit Score: 116.68  E-value: 4.98e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556888269   8 RSIALQTLYEWDFRDKN--EEKLDAVIEKNLVEfgtglDDAQFVRDLIKGVLAHREALDQIIEKAAPAWPLDQIAIVDRN 85
Cdd:cd00447     3 REIAFQALYQVEIRNGIslEAVLSALEKLQLAK-----KDRPFALELVYGVLRNLPELDDIISPLLKKWLLDRLDKVDRA 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2556888269  86 ILRLGLYELLFgDRSAVPPKVAINEAIELAKSFGGEASGRFVNGVLGTVYREI 138
Cdd:cd00447    78 ILRLLLYELYQ-LLYDVPPPVAINEAVELAKRFGDDDSAKFVNGVLRRIAKES 129
PRK14904 PRK14904
16S rRNA methyltransferase B; Provisional
 7-131 1.42e-21

16S rRNA methyltransferase B; Provisional


Pssm-ID: 237858 [Multi-domain]  Cd Length: 445  Bit Score: 90.12  E-value: 1.42e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556888269   7 SRSIALQTLYEWDfrdKNEEKLDAVIEKNLVEFGTGLDDAQFVRDLIKGVLAHREALDQII--------EKAAPawpldq 78
Cdd:PRK14904    4 ARELALQVLQELE---TGERKSDTLLHRMLERSSLERNDRALATELVNGVLRYRLQLDFIIsrfyhhdlEKAAP------ 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2556888269  79 iaiVDRNILRLGLYELLFGDRsaVPPKVAINEAIELAKSFGGEASGRFVNGVL 131
Cdd:PRK14904   75 ---VLKNILRLGVYQLLFLDR--VPRWAAVNECVKLARKYKGEHMAKLVNGVL 122
PRK14902 PRK14902
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;
8-145 1.05e-18

16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;


Pssm-ID: 237857 [Multi-domain]  Cd Length: 444  Bit Score: 82.15  E-value: 1.05e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556888269   8 RSIALQTLYEWdfrdkNEEK------LDAVIEKNLVEfgtgLDDAQFVRDLIKGVLAHREALDQIIEKAAPawPLDQIAI 81
Cdd:PRK14902    6 RELALEVLIKV-----ENNGaysniaLNKVLKKSELS----DKDKALLTELVYGTIQRKLTLDYYLAPFIK--KRKKLDP 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2556888269  82 VDRNILRLGLYELLFGDRsaVPPKVAINEAIELAKSFGGEASGRFVNGVLGTVYREiGEPGKDD 145
Cdd:PRK14902   75 WVRNLLRMSLYQLLYLDK--VPDHAAVNEAVEIAKKRGHKGIAKFVNGVLRNILRE-GLPDIDE 135
Methyltransferase_Sun cd00620
N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine ...
 8-137 4.47e-17

N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.


Pssm-ID: 238343 [Multi-domain]  Cd Length: 126  Bit Score: 73.14  E-value: 4.47e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556888269   8 RSIALQTLYEWDFRDKNEEKLDAVIEKnLVEFGTgldDAQFVRDLIKGVLAHREALDQIIEKAAPAWPLDQIAIVdRNIL 87
Cdd:cd00620     4 RSTAAEVLRDVLQRGASLNAVLSALQK-KDKSDR---DRGLATELVYGTLRWLALLDWIINPLLKKPDVGKDPDV-RNLL 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 2556888269  88 RLGLYELLFGDrsaVPPKVAINEAIELAKSFGGEASGRFVNGVLGTVYRE 137
Cdd:cd00620    79 RLGLYQLLYLD---VPPHAAVDETVEIAKIRKDLGRAGLVNAVLRRFERE 125
PRK14901 PRK14901
16S rRNA methyltransferase B; Provisional
 45-131 1.81e-08

16S rRNA methyltransferase B; Provisional


Pssm-ID: 237856 [Multi-domain]  Cd Length: 434  Bit Score: 52.62  E-value: 1.81e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556888269  45 DAQFVRDLIKGVLAHREALDQIIE----KAAPAWPLDQiaivdRNILRLGLYELLFGDRsaVPPKVAINEAIELAK--SF 118
Cdd:PRK14901   37 DRALVTELVYGCIRRRRTLDAWIDqlgkKPAHKQPPDL-----RWLLHLGLYQLRYMDR--IPASAAVNTTVELAKqnGL 109

                          90
                  ....*....|...
gi 2556888269 119 GGEASgrFVNGVL 131
Cdd:PRK14901  110 GGLAG--VVNGIL 120
PRK14903 PRK14903
16S rRNA methyltransferase B; Provisional
 45-141 3.61e-06

16S rRNA methyltransferase B; Provisional


Pssm-ID: 184896 [Multi-domain]  Cd Length: 431  Bit Score: 46.02  E-value: 3.61e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556888269  45 DAQFVRDLIKGVLAHREALDQIIEKAAPAwplDQIAIVDRNILRLGLYELLFGDRsaVPPKVAINEAIELAKSfggEASG 124
Cdd:PRK14903   38 DRRFFKELVWGVVRKEELLDWYINQLLKK---KDIPPAVRVALRMGAYQLLFMNS--VPDYAAVSETVKLVKN---ENFK 109

                          90
                  ....*....|....*..
gi 2556888269 125 RFVNGVLGTVyREIGEP 141
Cdd:PRK14903  110 KLVNAVLRRL-RTVPEP 125
PRK10901 PRK10901
16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;
48-131 4.70e-06

16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB;


Pssm-ID: 236790 [Multi-domain]  Cd Length: 427  Bit Score: 45.57  E-value: 4.70e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2556888269  48 FVRDLIKGVLAHREALDQIIEKAAPAWPLDQIAIVDrNILRLGLYELLFgdrSAVPPKVAINEAIELAKSFGGEASGRFV 127
Cdd:PRK10901   40 LLQELCYGVLRRLPRLEWLIAQLLAKPLKGKQRIVH-ALLLVGLYQLLY---TRIPAHAAVDETVEAAKALKRPWAKGLV 115


                  ....
gi 2556888269 128 NGVL 131
Cdd:PRK10901  116 NAVL 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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