|
Name |
Accession |
Description |
Interval |
E-value |
| type_IV_pilB |
TIGR02538 |
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus ... |
8-566 |
0e+00 |
|
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274186 [Multi-domain] Cd Length: 564 Bit Score: 884.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 8 GLTKQLVLAELITEQSAQQAYQQAQRSRIPLVSYLVQNKLVQSRQVAEIASEHFGVALLDLNSLDKEAQPTGLVSEKLVR 87
Cdd:TIGR02538 1 GLGRILVKAGLLTETQAQAALEEAQASGQPLVQYLIQNGLLDPKQLAEFLSREFGVPLLDLNAFDPDALPVQLVSEELIQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 88 QHHALPLWRRGNKLFVGISDPTNHQAINDIQFSTGLTTEAILVEDDKLSDAIEKFFESTSTGLEGMGDAD---LDGLDIE 164
Cdd:TIGR02538 81 KHQALPLFKRGNTLFVAVSDPTNISALDDIRFATGLNVEVVIVEEDKLSALIEKYYGGSDSLAKELGDEDigdLEELDVD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 165 SIDDTKQDSIGGQD-TDDAPVVRFVNKMLLDAIKGGSSDLHFEPYEKIYRVRVRTDGMLREVARPPIQLATRIAARLKVM 243
Cdd:TIGR02538 161 AIDDEGPDDIEQDAvDDDAPIVKFVNKILLDAIRKGASDIHFEPYEKSYRVRFRIDGILHEVAQPPLALANRIAARIKVM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 244 ASLDISERRKPQDGRLKMRLSKTKSIDFRVNTLPTLWGEKVVIRILDPSSAQMGIDALGYEPDQKDLYMAALKQPQGLIL 323
Cdd:TIGR02538 241 SRLDIAEKRIPQDGRIKLKLSKSKAIDFRVSTLPTLFGEKVVLRILDSSAAQLDIDKLGFEPDQKALFLEAIHKPQGMVL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 324 VTGPTGSGKTVSLYTGLNILNTVDINISTAEDPVEINMEGINQVNVNPRQGLDFAQALRSFLRQDPDVIMVGEIRDLETA 403
Cdd:TIGR02538 321 VTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRDLETA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 404 EIAIKAAQTGHLVLSTLHTNSAAETLIRLQNMGIPGFNIATAVHLIIAQRLARKLCNHCKKAIEVPEETLLKEGFPRERI 483
Cdd:TIGR02538 401 EIAIKAAQTGHLVLSTLHTNDAPETLARLVNMGIAPFNIASSVNLIMAQRLARRLCSHCKAPEEVPAEALLELGFTQEDL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 484 GTFTIYEPVGCEQC-NHGYKGRVGVYEVVKNTPELQRLIMAEGNSLEIDLQMRKDGFNDLRTSGLLKVMQGVTSLEEINR 562
Cdd:TIGR02538 481 ADLKLYGPVGCDECsNTGYKGRVGIYEVMPMSEEIAELILKGGNALQIAELAQKEGMRTLRRSGLLKVKQGVTSLEEVLR 560
|
....
gi 2559152907 563 VTKD 566
Cdd:TIGR02538 561 VTVD 564
|
|
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
1-566 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 783.61 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 1 MNDIALSGLTKQLVLAELITEQSAQQAYQQAQRSRIPLVSYLVQNKLVQSRQVAEIASEHFGVALLDLNSLDKEAQPTGL 80
Cdd:COG2804 1 GALSLLLRLGDLLVEAGLISEEQLLAALAEQKKTGKPLGELLVELGLVTEELLAEALAEQLGLPFVDLDELEIDPEVLEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 81 VSEKLVRQHHALPLWRRGNKLFVGISDPTNHQAINDIQFSTGLTTEAILVEDDKLSDAIEKFFESTSTGLEGMGDADLDG 160
Cdd:COG2804 81 LPEELARRHRVLPLRLEGGTLTVAMADPLDLEALDELRRLTGRPVEPVVATESDIERALDRLYGSESSIEELLEELAEDL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 161 LDIESIDDTKQDSIggqdtDDAPVVRFVNKMLLDAIKGGSSDLHFEPYEKIYRVRVRTDGMLREVARPPIQLATRIAARL 240
Cdd:COG2804 161 TSEEEDLEDLLEEA-----DDAPVVRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSLAPALVSRI 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 241 KVMASLDISERRKPQDGRLKMRLSkTKSIDFRVNTLPTLWGEKVVIRILDPSSAQMGIDALGYEPDQKDLYMAALKQPQG 320
Cdd:COG2804 236 KIMANLDIAERRLPQDGRIKLRLG-GREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQLERLRRLIRRPHG 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 321 LILVTGPTGSGKTVSLYTGLNILNTVDINISTAEDPVEINMEGINQVNVNPRQGLDFAQALRSFLRQDPDVIMVGEIRDL 400
Cdd:COG2804 315 IILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQDPDVIMVGEIRDL 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 401 ETAEIAIKAAQTGHLVLSTLHTNSAAETLIRLQNMGIPGFNIATAVHLIIAQRLARKLCNHCKKAIEVPEETLLKEGFPR 480
Cdd:COG2804 395 ETAEIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEPDPEELERLGLPP 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 481 ERIGTFTIYEPVGCEQCNH-GYKGRVGVYEVVKNTPELQRLIMAEGNSLEIDLQMRKDGFNDLRTSGLLKVMQGVTSLEE 559
Cdd:COG2804 475 EELAPLTFYRGVGCEHCNGtGYKGRTGIYELLVIDDELRELIAEGASAAELREAARKEGMRTLREDGLEKVLQGITTLEE 554
|
....*..
gi 2559152907 560 INRVTKD 566
Cdd:COG2804 555 VLRVTGE 561
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
85-564 |
1.91e-179 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 514.09 E-value: 1.91e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 85 LVRQHHALPLWRRGNKLFVGISDPTNHQAINDIQFSTGLtteAILVEddklsdaiekffESTSTGLEGMgdadldgLDIE 164
Cdd:PRK10436 12 LCQRYQAVLLDSDEETLHVAVVDAPSHELLDALRFATGK---RIEIE------------CWPRAQMEQH-------LQRT 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 165 SIDDTKQDsiggqDTDDAPVVRFVNKMLLDAIKGGSSDLHFEPYEKIYRVRVRTDGMLREVARPPIQLATRIAARLKVMA 244
Cdd:PRK10436 70 QQTLPVAD-----QEKDTPVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLG 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 245 SLDISERRKPQDGRLKMRLSKtKSIDFRVNTLPTLWGEKVVIRILDPSSAQMGIDALGYEPDQKDLYMAALKQPQGLILV 324
Cdd:PRK10436 145 NLDIAERRLPQDGQFTVELAG-NAYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILV 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 325 TGPTGSGKTVSLYTGLNILNTVDINISTAEDPVEINMEGINQVNVNPRQGLDFAQALRSFLRQDPDVIMVGEIRDLETAE 404
Cdd:PRK10436 224 TGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAE 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 405 IAIKAAQTGHLVLSTLHTNSAAETLIRLQNMGIPGFNIATAVHLIIAQRLARKLCNHCKKAIEvpEETLLKEGFpreRIG 484
Cdd:PRK10436 304 IAIKAAQTGHLVLSTLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCRQQAS--EPIHLPPNI---WPG 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 485 TFTIYEPVGCEQCNHGYKGRVGVYEVVKNTPELQRLIMAEGNSLEIDLQMRKDGFNDLRTSGLLKVMQGVTSLEEINRVT 564
Cdd:PRK10436 379 PLPHWQAVGCEHCYHGYYGRTALFEVLPITPVLQQAIASNASPEELETHARQQGMTTLFENGLLAVEQGLTTLEELYRVL 458
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
189-458 |
2.29e-141 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 409.75 E-value: 2.29e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 189 NKMLLDAIKGGSSDLHFEPYEKIYRVRVRTDGMLREVARPPIQLATRIAARLKVMASLDISERRKPQDGRLKMRLsKTKS 268
Cdd:pfam00437 1 NLIPLEALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRI-GGKG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 269 IDFRVNTLPTLWGEKVVIRILDPSSAQMGIDALGYEPDQKDLYMAALKQPQGLILVTGPTGSGKTVSLYTGLNILNTVDI 348
Cdd:pfam00437 80 VRVRVSTLPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 349 NISTAEDPVEINMEGINQVNVNPRQGLDFAQALRSFLRQDPDVIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAET 428
Cdd:pfam00437 160 NIVTVEDPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGA 239
|
250 260 270
....*....|....*....|....*....|
gi 2559152907 429 LIRLQNMGIPGFNIATAVHLIIAQRLARKL 458
Cdd:pfam00437 240 LTRLQDMGVPPFELASSLLLVIAQRLVRKL 269
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
189-454 |
9.66e-86 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 267.01 E-value: 9.66e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 189 NKMLLDAIKGGSSDLHFEPYEKIYRVRVRTDGMLREVARPPIQLATRIAARLKVMASLDISERRKPQDGRLKMRLSKtKS 268
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELNE-QQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 269 IDFRVNTLPTLWG-EKVVIRILDPSSAQMGIDalgYEPDQKDLYMAALKQPQGLILVTGPTGSGKTVSLYTGLNILNTvD 347
Cdd:NF041000 80 ISLRLSTVGDFLGrESLVIRLLYQLEQIKPQL---FFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYSLARKLAL-N 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 348 INISTAEDPVEINMEGINQVNVNPRQGLDFAQALRSFLRQDPDVIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAE 427
Cdd:NF041000 156 KQVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAG 235
|
250 260
....*....|....*....|....*..
gi 2559152907 428 TLIRLQNMGIPGFNIATAVHLIIAQRL 454
Cdd:NF041000 236 VIYRLLELGISKEELEQTLIGISYQRL 262
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
309-457 |
5.23e-80 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 248.17 E-value: 5.23e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 309 DLYMAALKQPQGLILVTGPTGSGKTVSLYTGLNILNTVDINISTAEDPVEINMEGINQVNVNPRQGLDFAQALRSFLRQD 388
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2559152907 389 PDVIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAETLIRLQNMGIPGFNIATAVHLIIAQRLARK 457
Cdd:cd01129 81 PDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVGR 149
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| type_IV_pilB |
TIGR02538 |
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus ... |
8-566 |
0e+00 |
|
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274186 [Multi-domain] Cd Length: 564 Bit Score: 884.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 8 GLTKQLVLAELITEQSAQQAYQQAQRSRIPLVSYLVQNKLVQSRQVAEIASEHFGVALLDLNSLDKEAQPTGLVSEKLVR 87
Cdd:TIGR02538 1 GLGRILVKAGLLTETQAQAALEEAQASGQPLVQYLIQNGLLDPKQLAEFLSREFGVPLLDLNAFDPDALPVQLVSEELIQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 88 QHHALPLWRRGNKLFVGISDPTNHQAINDIQFSTGLTTEAILVEDDKLSDAIEKFFESTSTGLEGMGDAD---LDGLDIE 164
Cdd:TIGR02538 81 KHQALPLFKRGNTLFVAVSDPTNISALDDIRFATGLNVEVVIVEEDKLSALIEKYYGGSDSLAKELGDEDigdLEELDVD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 165 SIDDTKQDSIGGQD-TDDAPVVRFVNKMLLDAIKGGSSDLHFEPYEKIYRVRVRTDGMLREVARPPIQLATRIAARLKVM 243
Cdd:TIGR02538 161 AIDDEGPDDIEQDAvDDDAPIVKFVNKILLDAIRKGASDIHFEPYEKSYRVRFRIDGILHEVAQPPLALANRIAARIKVM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 244 ASLDISERRKPQDGRLKMRLSKTKSIDFRVNTLPTLWGEKVVIRILDPSSAQMGIDALGYEPDQKDLYMAALKQPQGLIL 323
Cdd:TIGR02538 241 SRLDIAEKRIPQDGRIKLKLSKSKAIDFRVSTLPTLFGEKVVLRILDSSAAQLDIDKLGFEPDQKALFLEAIHKPQGMVL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 324 VTGPTGSGKTVSLYTGLNILNTVDINISTAEDPVEINMEGINQVNVNPRQGLDFAQALRSFLRQDPDVIMVGEIRDLETA 403
Cdd:TIGR02538 321 VTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRDLETA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 404 EIAIKAAQTGHLVLSTLHTNSAAETLIRLQNMGIPGFNIATAVHLIIAQRLARKLCNHCKKAIEVPEETLLKEGFPRERI 483
Cdd:TIGR02538 401 EIAIKAAQTGHLVLSTLHTNDAPETLARLVNMGIAPFNIASSVNLIMAQRLARRLCSHCKAPEEVPAEALLELGFTQEDL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 484 GTFTIYEPVGCEQC-NHGYKGRVGVYEVVKNTPELQRLIMAEGNSLEIDLQMRKDGFNDLRTSGLLKVMQGVTSLEEINR 562
Cdd:TIGR02538 481 ADLKLYGPVGCDECsNTGYKGRVGIYEVMPMSEEIAELILKGGNALQIAELAQKEGMRTLRRSGLLKVKQGVTSLEEVLR 560
|
....
gi 2559152907 563 VTKD 566
Cdd:TIGR02538 561 VTVD 564
|
|
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
1-566 |
0e+00 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 783.61 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 1 MNDIALSGLTKQLVLAELITEQSAQQAYQQAQRSRIPLVSYLVQNKLVQSRQVAEIASEHFGVALLDLNSLDKEAQPTGL 80
Cdd:COG2804 1 GALSLLLRLGDLLVEAGLISEEQLLAALAEQKKTGKPLGELLVELGLVTEELLAEALAEQLGLPFVDLDELEIDPEVLEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 81 VSEKLVRQHHALPLWRRGNKLFVGISDPTNHQAINDIQFSTGLTTEAILVEDDKLSDAIEKFFESTSTGLEGMGDADLDG 160
Cdd:COG2804 81 LPEELARRHRVLPLRLEGGTLTVAMADPLDLEALDELRRLTGRPVEPVVATESDIERALDRLYGSESSIEELLEELAEDL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 161 LDIESIDDTKQDSIggqdtDDAPVVRFVNKMLLDAIKGGSSDLHFEPYEKIYRVRVRTDGMLREVARPPIQLATRIAARL 240
Cdd:COG2804 161 TSEEEDLEDLLEEA-----DDAPVVRLVNAILEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSLAPALVSRI 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 241 KVMASLDISERRKPQDGRLKMRLSkTKSIDFRVNTLPTLWGEKVVIRILDPSSAQMGIDALGYEPDQKDLYMAALKQPQG 320
Cdd:COG2804 236 KIMANLDIAERRLPQDGRIKLRLG-GREIDLRVSTLPTVYGEKVVLRILDKSAALLDLEQLGFSPDQLERLRRLIRRPHG 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 321 LILVTGPTGSGKTVSLYTGLNILNTVDINISTAEDPVEINMEGINQVNVNPRQGLDFAQALRSFLRQDPDVIMVGEIRDL 400
Cdd:COG2804 315 IILVTGPTGSGKTTTLYAALNELNTPERNIITVEDPVEYQLPGINQVQVNPKIGLTFASALRSILRQDPDVIMVGEIRDL 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 401 ETAEIAIKAAQTGHLVLSTLHTNSAAETLIRLQNMGIPGFNIATAVHLIIAQRLARKLCNHCKKAIEVPEETLLKEGFPR 480
Cdd:COG2804 395 ETAEIAVQAALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEPDPEELERLGLPP 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 481 ERIGTFTIYEPVGCEQCNH-GYKGRVGVYEVVKNTPELQRLIMAEGNSLEIDLQMRKDGFNDLRTSGLLKVMQGVTSLEE 559
Cdd:COG2804 475 EELAPLTFYRGVGCEHCNGtGYKGRTGIYELLVIDDELRELIAEGASAAELREAARKEGMRTLREDGLEKVLQGITTLEE 554
|
....*..
gi 2559152907 560 INRVTKD 566
Cdd:COG2804 555 VLRVTGE 561
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
85-564 |
1.91e-179 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 514.09 E-value: 1.91e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 85 LVRQHHALPLWRRGNKLFVGISDPTNHQAINDIQFSTGLtteAILVEddklsdaiekffESTSTGLEGMgdadldgLDIE 164
Cdd:PRK10436 12 LCQRYQAVLLDSDEETLHVAVVDAPSHELLDALRFATGK---RIEIE------------CWPRAQMEQH-------LQRT 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 165 SIDDTKQDsiggqDTDDAPVVRFVNKMLLDAIKGGSSDLHFEPYEKIYRVRVRTDGMLREVARPPIQLATRIAARLKVMA 244
Cdd:PRK10436 70 QQTLPVAD-----QEKDTPVAQLINQTLQSALQKRASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARLKVLG 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 245 SLDISERRKPQDGRLKMRLSKtKSIDFRVNTLPTLWGEKVVIRILDPSSAQMGIDALGYEPDQKDLYMAALKQPQGLILV 324
Cdd:PRK10436 145 NLDIAERRLPQDGQFTVELAG-NAYSFRIATLPCRGGEKVVLRLLQQVQQALDLETLGMTPAQLAQFRQALQQPQGLILV 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 325 TGPTGSGKTVSLYTGLNILNTVDINISTAEDPVEINMEGINQVNVNPRQGLDFAQALRSFLRQDPDVIMVGEIRDLETAE 404
Cdd:PRK10436 224 TGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAE 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 405 IAIKAAQTGHLVLSTLHTNSAAETLIRLQNMGIPGFNIATAVHLIIAQRLARKLCNHCKKAIEvpEETLLKEGFpreRIG 484
Cdd:PRK10436 304 IAIKAAQTGHLVLSTLHTNSTSETLVRLQQMGIARWMLASALKLVIAQRLVRKLCPHCRQQAS--EPIHLPPNI---WPG 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 485 TFTIYEPVGCEQCNHGYKGRVGVYEVVKNTPELQRLIMAEGNSLEIDLQMRKDGFNDLRTSGLLKVMQGVTSLEEINRVT 564
Cdd:PRK10436 379 PLPHWQAVGCEHCYHGYYGRTALFEVLPITPVLQQAIASNASPEELETHARQQGMTTLFENGLLAVEQGLTTLEELYRVL 458
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
84-564 |
2.30e-169 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 489.20 E-value: 2.30e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 84 KLVRQHHALPLWRRGNKLFVGISDPTNHQAINDIQFSTGLTTEAILVEDDKLSDAIEKFFESTSTGLEGMGDA-DLDGLD 162
Cdd:TIGR02533 7 GFAKQSRVLPLSEHDGTLVVAVSDPLDLAALDEVRRLFGAPVQLIIATASEIDDAINSVYARTGSAAAQIVEEiEGEDDL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 163 IESIDDTKQDSIGGQDTDDAPVVRFVNKMLLDAIKGGSSDLHFEPYEKIYRVRVRTDGMLREVARPPIQLATRIAARLKV 242
Cdd:TIGR02533 87 SALELDEPKIEDLLDLEDDAPVIRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKLHAALVSRVKI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 243 MASLDISERRKPQDGRLKMRLSKtKSIDFRVNTLPTLWGEKVVIRILDPSSAQMGIDALGYEPDQKDLYMAALKQPQGLI 322
Cdd:TIGR02533 167 MAKLNIAEKRLPQDGRISLRVGG-RDIDIRVSTVPTSHGERVVMRLLDKTAVRLDLETLGMSPELLSRFERLIRRPHGII 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 323 LVTGPTGSGKTVSLYTGLNILNTVDINISTAEDPVEINMEGINQVNVNPRQGLDFAQALRSFLRQDPDVIMVGEIRDLET 402
Cdd:TIGR02533 246 LVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLET 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 403 AEIAIKAAQTGHLVLSTLHTNSAAETLIRLQNMGIPGFNIATAVHLIIAQRLARKLCNHCKKAIEVPEETLLKEGFPREr 482
Cdd:TIGR02533 326 AQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATPEEIALFGISPE- 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 483 iGTFTIYEPVGCEQCNH-GYKGRVGVYEVVKNTPELQRLIMAEGNSLEIDLQMRKDGFNDLRTSGLLKVMQGVTSLEEIN 561
Cdd:TIGR02533 405 -GPINLYRPVGCPHCNHtGYLGRTGIYELLIVDDDLRSLIHSRADEGEIKEIARAAGMRTLRDDGLRKVLAGITTIEEVL 483
|
...
gi 2559152907 562 RVT 564
Cdd:TIGR02533 484 RVT 486
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
189-458 |
2.29e-141 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 409.75 E-value: 2.29e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 189 NKMLLDAIKGGSSDLHFEPYEKIYRVRVRTDGMLREVARPPIQLATRIAARLKVMASLDISERRKPQDGRLKMRLsKTKS 268
Cdd:pfam00437 1 NLIPLEALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARLISRIKVMARLDISERRPPQDGRLPLRI-GGKG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 269 IDFRVNTLPTLWGEKVVIRILDPSSAQMGIDALGYEPDQKDLYMAALKQPQGLILVTGPTGSGKTVSLYTGLNILNTVDI 348
Cdd:pfam00437 80 VRVRVSTLPTAGGEKLVIRLLDPSNVALSLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAALGELNTRDE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 349 NISTAEDPVEINMEGINQVNVNPRQGLDFAQALRSFLRQDPDVIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAET 428
Cdd:pfam00437 160 NIVTVEDPVEIQLEGINQVQLNARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGA 239
|
250 260 270
....*....|....*....|....*....|
gi 2559152907 429 LIRLQNMGIPGFNIATAVHLIIAQRLARKL 458
Cdd:pfam00437 240 LTRLQDMGVPPFELASSLLLVIAQRLVRKL 269
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
189-454 |
9.66e-86 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 267.01 E-value: 9.66e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 189 NKMLLDAIKGGSSDLHFEPYEKIYRVRVRTDGMLREVARPPIQLATRIAARLKVMASLDISERRKPQDGRLKMRLSKtKS 268
Cdd:NF041000 1 EELIEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRELSLEEGQRLISYFKFLAGMDIGEKRRPQSGAFTYELNE-QQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 269 IDFRVNTLPTLWG-EKVVIRILDPSSAQMGIDalgYEPDQKDLYMAALKQPQGLILVTGPTGSGKTVSLYTGLNILNTvD 347
Cdd:NF041000 80 ISLRLSTVGDFLGrESLVIRLLYQLEQIKPQL---FFPEQFQLLKQLLQRRSGLILFSGPTGSGKTTTMYSLARKLAL-N 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 348 INISTAEDPVEINMEGINQVNVNPRQGLDFAQALRSFLRQDPDVIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAE 427
Cdd:NF041000 156 KQVITIEDPVEIKEPNFLQLQVNEKAGMTYDTLLKAALRHRPDILIIGEIRDAETAKAAIRAALTGHLVLSTVHAKSAAG 235
|
250 260
....*....|....*....|....*..
gi 2559152907 428 TLIRLQNMGIPGFNIATAVHLIIAQRL 454
Cdd:NF041000 236 VIYRLLELGISKEELEQTLIGISYQRL 262
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
309-457 |
5.23e-80 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 248.17 E-value: 5.23e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 309 DLYMAALKQPQGLILVTGPTGSGKTVSLYTGLNILNTVDINISTAEDPVEINMEGINQVNVNPRQGLDFAQALRSFLRQD 388
Cdd:cd01129 1 ARLRRLIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPERNIITIEDPVEYQIPGINQSQVNEKIGLTFADALRAILRQD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2559152907 389 PDVIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAETLIRLQNMGIPGFNIATAVHLIIAQRLARK 457
Cdd:cd01129 81 PDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASALRGVIAQRLVGR 149
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
188-559 |
1.50e-60 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 203.78 E-value: 1.50e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 188 VNKMLLDAIKGGSSDLHF---EPyekiyrVRVRTDGMLREVARPPIQlatriAARLKVMASLDISERRKPqdgrlkmRLS 264
Cdd:COG2805 5 LDELLKLAVEQGASDLHLtvgSP------PMLRIDGELVPLDDPPLT-----PEDLEALLKEILTEEQRE-------RLE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 265 KTKSID----------FRVNTLPTLWGEKVVIRILdpSSAQMGIDALGYEPDQKDLymaaLKQPQGLILVTGPTGSGKTV 334
Cdd:COG2805 67 EEGELDfsyslpglgrFRVNIFRQRGGVAAVLRLI--PSEIPTLEELGLPPVLKEL----AELPRGLVLVTGPTGSGKST 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 335 SLYTGLNILN-TVDINISTAEDPVEINMEG----INQVNVnprqGLD---FAQALRSFLRQDPDVIMVGEIRDLETAEIA 406
Cdd:COG2805 141 TLAAMIDYINeTRAKHIITIEDPIEFVHKHkkslINQREV----GRDtpsFANALRAALREDPDVILVGEMRDLETIEAA 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 407 IKAAQTGHLVLSTLHTNSAAETL--------------IRLQnmgipgfnIATAVHLIIAQRLARKlcnhckkaievpeet 472
Cdd:COG2805 217 LTAAETGHLVFATLHTNSAAQTIdriidvfppeeqaqIRSQ--------LAESLRGVISQRLLPR--------------- 273
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 473 llKEGfprerigtftiyepvgceqcnhgyKGRVGVYEVVKNTPELQRLIMaEGNSLEIDLQM---RKDGFNDLRTSGLLK 549
Cdd:COG2805 274 --ADG------------------------GGRVAAREILVNTPAVRNLIR-EGKTHQIPSLIqtgKKLGMQTMDQSLAEL 326
|
410
....*....|
gi 2559152907 550 VMQGVTSLEE 559
Cdd:COG2805 327 VKEGLITEET 336
|
|
| pilT_fam |
TIGR01420 |
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to ... |
188-559 |
3.01e-48 |
|
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. [Cell envelope, Surface structures, Cellular processes, Chemotaxis and motility]
Pssm-ID: 273613 Cd Length: 343 Bit Score: 170.96 E-value: 3.01e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 188 VNKMLLDAIKGGSSDLHFEPYEKiyrVRVRTDGMLREVARPPIQlATRIAARLKVMASlDISERRKPQDGRLKMRLSKTK 267
Cdd:TIGR01420 2 LEEILREAVKLGASDIHLTAGAP---PAMRIDGDLVRIEFEPLT-PEDTQKLAREILS-EKQREEFEENGELDFSFSLPG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 268 SIDFRVNTLPTLWGEKVVIRILdpSSAQMGIDALGYEPDQKDLymaaLKQPQGLILVTGPTGSGKTVSLYTGLNILN-TV 346
Cdd:TIGR01420 77 VGRFRVNAFYQRGGVALVLRLI--PSKIPTFEELGLPPVLREL----AERPRGLILVTGPTGSGKSTTLASMIDYINkNK 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 347 DINISTAEDPVEI----NMEGINQVNVNpRQGLDFAQALRSFLRQDPDVIMVGEIRDLETAEIAIKAAQTGHLVLSTLHT 422
Cdd:TIGR01420 151 AYHIITIEDPIEYvhtnKRSLINQREVG-EDTLSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTLHT 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 423 NSAAETLIRLQNMGIPGFNIATAVHL------IIAQRLarklcnhCKKAIEvpeetllkegfprerigtftiyepvgceq 496
Cdd:TIGR01420 230 NSAAQTIERIIDVFPAEEQEQIRTQLaeslvaIISQRL-------LPKADG----------------------------- 273
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2559152907 497 cnhgyKGRVGVYEVVKNTPELQRLIMaEGNSLEIDLQMRKDGFNDLRT--SGLLK-VMQGVTSLEE 559
Cdd:TIGR01420 274 -----GGRVLAVEILINTPAVRNLIR-EGKTHQIKSLIQTGQQLGMQTfdQHLAQlYKKGLITLED 333
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
298-530 |
9.53e-48 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 165.79 E-value: 9.53e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 298 IDALGYEPDQKDLYMAalkqPQGLILVTGPTGSGKTVSLYTGLNILN-TVDINISTAEDPVEI----NMEGINQVNVnpr 372
Cdd:cd01131 4 FEELGLPPVLKDLALK----PRGLVLVTGPTGSGKSTTLAAMIDYINeTRSKHIITIEDPIEFvhkhKKSLINQREV--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 373 qGLD---FAQALRSFLRQDPDVIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAETLIRLQNMGIPG------FNIA 443
Cdd:cd01131 77 -GRDtesFAAALRAALREDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIIDVFPPEqqeqvrIQLA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 444 TAVHLIIAQRLARKlcnhckkaievpeetllkegfprerigtftiyepvgceqcnHGYKGRVGVYEVVKNTPELQRLImA 523
Cdd:cd01131 156 SSLRGVISQRLLPK-----------------------------------------KDGGGRVAAFEILINTPAIRNLI-R 193
|
....*..
gi 2559152907 524 EGNSLEI 530
Cdd:cd01131 194 EGKTHQI 200
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
309-457 |
7.81e-35 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 129.42 E-value: 7.81e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 309 DLYMAALKQpQGLILVTGPTGSGKTvSLYTGLN--ILNTVDI--NISTAEDPVEINMEGIN-------QVNVnPRQGLDF 377
Cdd:cd19516 2 DLVEALFPR-EGLVYVAGATGSGKS-TLLAAIYryILENDPPdrKIITYEDPIEFVYDGIKskhsiivQSQI-PRHFKSF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 378 AQALRSFLRQDPDVIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAETLIRLQNMgIPG-------FNIATAVHLII 450
Cdd:cd19516 79 AKAVREALRRKPSLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISL-FPPeerdaaaYDLLSTLRFII 157
|
....*..
gi 2559152907 451 AQRLARK 457
Cdd:cd19516 158 VQRLVRT 164
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
320-458 |
7.19e-32 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 120.96 E-value: 7.19e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 320 GLILVTGPTGSGKTVSLYTGLNILNTvDINISTAEDPVEINM---EGINQVNVNPRqgLDFAQALRSFLRQDPDVIMVGE 396
Cdd:cd19477 11 KNVIVCGGTGSGKTTYIKSILEFIPK-EERIISIEDTEEIVFkhhKNYTQLFFGGN--ITSADCLKSCLRQRPDRIILGE 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2559152907 397 IRDlETAEIAIKAAQTGH-LVLSTLHTNSAAETLIRLQNMGIPG------------FNIATAVHLIIAQRLARKL 458
Cdd:cd19477 88 LRS-SEAYDFYNVLCSGHkGTLTTLHAGSSEEAFIRLAN*SSSNsaarnikfesliEGFKDLIDGIVHINHHKQC 161
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
298-457 |
2.69e-31 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 124.83 E-value: 2.69e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 298 IDALGYEPDQKDLYMAalkqPQGLILVTGPTGSGKTVSLYTGLNILNTvdiN----ISTAEDPVE--------InmegIN 365
Cdd:COG5008 106 LDELGLPPVLKDLIME----KRGLVLFVGATGSGKSTTLAAMIDHRNE---NssghILTIEDPIEfvhkhkksI----VT 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 366 QVNVnprqGLD---FAQALRSFLRQDPDVIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAETLIRLQNMgIPG--- 439
Cdd:COG5008 175 QREV----GVDtesYEVALKNALRQAPDVILIGEIRDRETMEHAIAFAETGHLCLATLHANNANQALDRIINF-FPEerr 249
|
170 180
....*....|....*....|..
gi 2559152907 440 ----FNIATAVHLIIAQRLARK 457
Cdd:COG5008 250 pqllMDLSLNLRAIVSQRLVPT 271
|
|
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
247-456 |
5.61e-26 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 109.51 E-value: 5.61e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 247 DISERRKPQDG-RLKMRLSKTKSIDFRVNTLPTLwgekvVIRILD---PSSAQMGIdalgyepdQKDLYMAALKQpQGLI 322
Cdd:TIGR02525 87 DENGRYGLGRGeRVRFRCNFIQATIGKLETAISL-----TLRVIPsdiPDLKQMGI--------EPDLFNSLLPA-AGLG 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 323 LVTGPTGSGKTV---SLYTglNILNTV-DINISTAEDPVEINMEGINQVnVNPRQ---GLD---FAQALRSFLRQDPDVI 392
Cdd:TIGR02525 153 LICGETGSGKSTlaaSIYQ--HCGETYpDRKIVTYEDPIEYILGSPDDL-LPPAQsqiGRDvdsFANGIRLALRRAPKII 229
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 393 MVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAETLIRLQNMGIP------GFNIATAVHLIIAQRLAR 456
Cdd:TIGR02525 230 GVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAISRCLQMYPPemreaaAFDLLSILQYIIVQRLLR 299
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
322-450 |
1.20e-20 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 89.52 E-value: 1.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 322 ILVTGPTGSGKTvslyTGLN-ILNTVDIN--ISTAEDPVEINMEGINQV------NVNPRQGLDFAQALRSFLRQDPDVI 392
Cdd:cd01130 15 ILISGGTGSGKT----TLLNaLLSFIPPDerIVTIEDTRELQLPHPNVVhlltrpGGGEKGEVTMADLLKAALRMRPDRI 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2559152907 393 MVGEIRDLETAEiAIKAAQTGHL-VLSTLHTNSAAETLIRLQNMGIPGFN----------IATAVHLII 450
Cdd:cd01130 91 IVGEVRGGEAYD-MLQAMNTGHPgSITTIHANSAEDAIDRLATLVLEAGVnldeealrrlIASAIDVIV 158
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
322-456 |
2.41e-18 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 87.83 E-value: 2.41e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 322 ILVTGPTGSGKTvslyTGLN-ILNTVDIN--ISTAEDPVEINMEGINQVNVNPRQGLDFAQA-------LRSFLRQDPDV 391
Cdd:COG0630 293 VLVAGGTASGKT----TLLNaLLSFIPPDakIVTIEDTRELNLPHENWISLVTRESFGGEEGdvtmfdlLKAALRQRPDY 368
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2559152907 392 IMVGEIRDLEtAEIAIKAAQTGHLVLSTLHTNSAAETLIRLQN--MGIPGFNIaTAVHLIIAQRLAR 456
Cdd:COG0630 369 IVVGEVRGEE-AYTLFQAMATGHGVLSTFHADSVESAINRLTSppINVPRTLL-QALDLVVFQKRVR 433
|
|
| T2SSE_N |
pfam05157 |
Type II secretion system (T2SS), protein E, N-terminal domain; This domain is found at the ... |
42-143 |
5.53e-17 |
|
Type II secretion system (T2SS), protein E, N-terminal domain; This domain is found at the N-terminus of members of the Type II secretion system protein E. Proteins in this subfamily are typically involved in Type 4 pilus biogenesis, though some are involved in other processes; for instance aggregation in Myxococcus xanthus. The structure of this domain is now known.
Pssm-ID: 428339 [Multi-domain] Cd Length: 108 Bit Score: 76.60 E-value: 5.53e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 42 LVQNKLVQSRQVAEIASEHFGVALLDLNSLDKEAQPTGLVSEKLVRQHHALPLWRRGNKLFVGISDPTNHQAINDIQFST 121
Cdd:pfam05157 1 LVELGLLSEEQLAQALAEQLGLPFVDLEALEIDPELLRLLPREFARRHRVLPLREDGGTLVVAVADPLDLALLDELRFLT 80
|
90 100
....*....|....*....|..
gi 2559152907 122 GLTTEAILVEDDKLSDAIEKFF 143
Cdd:pfam05157 81 GKRVEPVLATPSDIRRALERLY 102
|
|
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
322-456 |
6.05e-17 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 82.91 E-value: 6.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 322 ILVTGPTGSGKTvslyTGLNIL-NTVDIN--ISTAEDPVEINMEGINQV-------NVNPRQGLDFAQALRSFLRQDPDV 391
Cdd:COG4962 185 ILVSGGTGSGKT----TLLNALsGFIPPDerIVTIEDAAELQLQHPHVVrletrppNVEGAGEVTLRDLVRNALRMRPDR 260
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2559152907 392 IMVGEIRDletAEIA--IKAAQTGHL-VLSTLHTNSAAETLIRLQNMGI-PGFN---------IATAVHLIIAQRLAR 456
Cdd:COG4962 261 IIVGEVRG---AEALdmLQAMNTGHDgSMSTLHANSARDALARLETLALmAGENlpreavrrqIASAIDLVVHLERLR 335
|
|
| VirB11 |
TIGR02788 |
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of ... |
322-435 |
2.64e-11 |
|
P-type DNA transfer ATPase VirB11; The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Pssm-ID: 274301 Cd Length: 308 Bit Score: 64.68 E-value: 2.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 322 ILVTGPTGSGKTvslyTGLN-ILNTVDIN--ISTAEDPVEINMEGINQV------NVNPRQGLDFAQALRSFLRQDPDVI 392
Cdd:TIGR02788 147 IIISGGTGSGKT----TFLKsLVDEIPKDerIITIEDTREIFLPHPNYVhlfyskGGQGLAKVTPKDLLQSCLRMRPDRI 222
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2559152907 393 MVGEIRDLETAEIaIKAAQTGHL-VLSTLHTNSAAETLIRLQNM 435
Cdd:TIGR02788 223 ILGELRGDEAFDF-IRAVNTGHPgSITTLHAGSPEEAFEQLALM 265
|
|
| PRK13894 |
PRK13894 |
conjugal transfer ATPase TrbB; Provisional |
307-450 |
9.98e-10 |
|
conjugal transfer ATPase TrbB; Provisional
Pssm-ID: 184377 Cd Length: 319 Bit Score: 60.14 E-value: 9.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 307 QKDLYMAALKQPQGlILVTGPTGSGKTvslyTGLN-ILNTVDINISTA-----EDPVEINMEGINQVNVNPRQGLDFAQA 380
Cdd:PRK13894 137 QREAIIAAVRAHRN-ILVIGGTGSGKT----TLVNaIINEMVIQDPTErvfiiEDTGEIQCAAENYVQYHTSIDVNMTAL 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 381 LRSFLRQDPDVIMVGEIRDLETAEIaIKAAQTGHL-VLSTLHTNSAAETLIRLQNM---------GIPGFnIATAVHLII 450
Cdd:PRK13894 212 LKTTLRMRPDRILVGEVRGPEALDL-LMAWNTGHEgGAATLHANNAKAGLDRLKSLismhpdapkPIEPL-IGEAVHVVV 289
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
322-435 |
2.40e-09 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 59.04 E-value: 2.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 322 ILVTGPTGSGKTvslyTGLN------ILNTVDINISTAEDPVEINMEGINQVNVNPRQGLDFAQALRSFLRQDPDVIMVG 395
Cdd:PRK13833 147 IVISGGTGSGKT----TLANaviaeiVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVG 222
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 2559152907 396 EIRDlETAEIAIKAAQTGHL-VLSTLHTNSAAETLIRLQNM 435
Cdd:PRK13833 223 EVRD-GAALTLLKAWNTGHPgGVTTIHSNTAMSALRRLEQL 262
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
322-432 |
3.26e-04 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 42.96 E-value: 3.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2559152907 322 ILVTGPTGSGKTVSLYTGLNILNTVDiNISTAEDPVEINMEGINQV------NVNPRQGLDFAQALRSFLRQDPDVIMVG 395
Cdd:PRK13851 165 MLLCGPTGSGKTTMSKTLISAIPPQE-RLITIEDTLELVIPHENHVrllyskNGAGLGAVTAEHLLQASLRMRPDRILLG 243
|
90 100 110
....*....|....*....|....*....|....*...
gi 2559152907 396 EIRDlETAEIAIKAAQTGHL-VLSTLHTNSAAETLIRL 432
Cdd:PRK13851 244 EMRD-DAAWAYLSEVVSGHPgSISTIHGANPVQGFKKL 280
|
|
| |
