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Conserved domains on  [gi|2568628665|gb|WMG99916|]
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eukaryotic translation initiation factor 3 subunit B, partial [Graphium agamemnon]

Protein Classification

eIF2A family protein( domain architecture ID 1011892)

eIF2A family protein similar to Homo sapiens eukaryotic translation initiation factor 2A that functions in the early steps of protein synthesis of a small number of specific mRNAs

Gene Ontology:  GO:0006413|GO:0003743

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
eIF2A super family cl37576
Eukaryotic translation initiation factor eIF2A; This is a family of eukaryotic translation ...
 9-90 1.15e-20

Eukaryotic translation initiation factor eIF2A; This is a family of eukaryotic translation initiation factors.


The actual alignment was detected with superfamily member pfam08662:

Pssm-ID: 462552 [Multi-domain]  Cd Length: 194  Bit Score: 80.78  E-value: 1.15e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2568628665   9 KNLFSVADCKFHWQKSGDYLCVKVDryakVKKDKNDIKYsgmYYNFEIFHMREKEIPVDSVEIKE--PIQAFAWEPVGSK 86
Cdd:pfam08662   1 KSFFKADKVQLKWNKNGTYLLVLTD----TDVDKTGKSY---YGETNLYLIGETGGPDCVVELDKegPIHDVAWSPNGKE 73


                  ....
gi 2568628665  87 FAII 90
Cdd:pfam08662  74 FAVI 77
 
Name Accession Description Interval E-value
eIF2A pfam08662
Eukaryotic translation initiation factor eIF2A; This is a family of eukaryotic translation ...
 9-90 1.15e-20

Eukaryotic translation initiation factor eIF2A; This is a family of eukaryotic translation initiation factors.


Pssm-ID: 462552 [Multi-domain]  Cd Length: 194  Bit Score: 80.78  E-value: 1.15e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2568628665   9 KNLFSVADCKFHWQKSGDYLCVKVDryakVKKDKNDIKYsgmYYNFEIFHMREKEIPVDSVEIKE--PIQAFAWEPVGSK 86
Cdd:pfam08662   1 KSFFKADKVQLKWNKNGTYLLVLTD----TDVDKTGKSY---YGETNLYLIGETGGPDCVVELDKegPIHDVAWSPNGKE 73


                  ....
gi 2568628665  87 FAII 90
Cdd:pfam08662  74 FAVI 77
COG5354 COG5354
Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only];
1-90 1.05e-19

Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only];


Pssm-ID: 227657 [Multi-domain]  Cd Length: 561  Bit Score: 81.46  E-value: 1.05e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2568628665   1 PNRTEIRSKNLFSVADCKFHWQKSGDYLCVKVDRYAKVKKDkndikysgmYY---NFEIFHMREKEIPVDsVEIKEPIQA 77
Cdd:COG5354   210 PKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKS---------YFgesNLYLLRITERSIPVE-KDLKDPVHD 279

                          90
                  ....*....|...
gi 2568628665  78 FAWEPVGSKFAII 90
Cdd:COG5354   280 FTWEPLSSRFAVI 292
 
Name Accession Description Interval E-value
eIF2A pfam08662
Eukaryotic translation initiation factor eIF2A; This is a family of eukaryotic translation ...
 9-90 1.15e-20

Eukaryotic translation initiation factor eIF2A; This is a family of eukaryotic translation initiation factors.


Pssm-ID: 462552 [Multi-domain]  Cd Length: 194  Bit Score: 80.78  E-value: 1.15e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2568628665   9 KNLFSVADCKFHWQKSGDYLCVKVDryakVKKDKNDIKYsgmYYNFEIFHMREKEIPVDSVEIKE--PIQAFAWEPVGSK 86
Cdd:pfam08662   1 KSFFKADKVQLKWNKNGTYLLVLTD----TDVDKTGKSY---YGETNLYLIGETGGPDCVVELDKegPIHDVAWSPNGKE 73


                  ....
gi 2568628665  87 FAII 90
Cdd:pfam08662  74 FAVI 77
COG5354 COG5354
Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only];
1-90 1.05e-19

Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only];


Pssm-ID: 227657 [Multi-domain]  Cd Length: 561  Bit Score: 81.46  E-value: 1.05e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2568628665   1 PNRTEIRSKNLFSVADCKFHWQKSGDYLCVKVDRYAKVKKDkndikysgmYY---NFEIFHMREKEIPVDsVEIKEPIQA 77
Cdd:COG5354   210 PKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKS---------YFgesNLYLLRITERSIPVE-KDLKDPVHD 279

                          90
                  ....*....|...
gi 2568628665  78 FAWEPVGSKFAII 90
Cdd:COG5354   280 FTWEPLSSRFAVI 292
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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