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Conserved domains on  [gi|2570920105|gb|WML05460|]
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protein RER1, partial [Laxita thuisto]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rer1 super family cl02175
Rer1 family; RER1 family protein are involved in involved in the retrieval of some endoplasmic ...
 1-71 1.67e-41

Rer1 family; RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex.


The actual alignment was detected with superfamily member pfam03248:

Pssm-ID: 470487  Cd Length: 167  Bit Score: 132.65  E-value: 1.67e-41
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2570920105   1 DDNGPALPTRATEEFRPFIRRLPEFKFWLSVTKSTIVGFCCTFIDAFNIPVFWPILVMYFITLFCITMKRQ 71
Cdd:pfam03248  77 LEDGPSLPTKNDDEFRPFIRRLPEFKFWYSSTRATLIALFCTFFSIFDIPVFWPILLMYFIVLFVLTMRRQ 147
 
Name Accession Description Interval E-value
Rer1 pfam03248
Rer1 family; RER1 family protein are involved in involved in the retrieval of some endoplasmic ...
 1-71 1.67e-41

Rer1 family; RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex.


Pssm-ID: 460860  Cd Length: 167  Bit Score: 132.65  E-value: 1.67e-41
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2570920105   1 DDNGPALPTRATEEFRPFIRRLPEFKFWLSVTKSTIVGFCCTFIDAFNIPVFWPILVMYFITLFCITMKRQ 71
Cdd:pfam03248  77 LEDGPSLPTKNDDEFRPFIRRLPEFKFWYSSTRATLIALFCTFFSIFDIPVFWPILLMYFIVLFVLTMRRQ 147
RER1 COG5249
Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion];
9-71 7.06e-22

Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion];


Pssm-ID: 227574  Cd Length: 180  Bit Score: 82.98  E-value: 7.06e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2570920105   9 TRATEEFRPFIRRLPEFKFWLSVTKSTIVGFCCTFIDAFNIPVFWPILVMYFITLFCITMKRQ 71
Cdd:COG5249    96 GEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFLVFYTARRQ 158
 
Name Accession Description Interval E-value
Rer1 pfam03248
Rer1 family; RER1 family protein are involved in involved in the retrieval of some endoplasmic ...
 1-71 1.67e-41

Rer1 family; RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex.


Pssm-ID: 460860  Cd Length: 167  Bit Score: 132.65  E-value: 1.67e-41
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2570920105   1 DDNGPALPTRATEEFRPFIRRLPEFKFWLSVTKSTIVGFCCTFIDAFNIPVFWPILVMYFITLFCITMKRQ 71
Cdd:pfam03248  77 LEDGPSLPTKNDDEFRPFIRRLPEFKFWYSSTRATLIALFCTFFSIFDIPVFWPILLMYFIVLFVLTMRRQ 147
RER1 COG5249
Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion];
9-71 7.06e-22

Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion];


Pssm-ID: 227574  Cd Length: 180  Bit Score: 82.98  E-value: 7.06e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2570920105   9 TRATEEFRPFIRRLPEFKFWLSVTKSTIVGFCCTFIDAFNIPVFWPILVMYFITLFCITMKRQ 71
Cdd:COG5249    96 GEKDNEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFLVFYTARRQ 158
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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