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Conserved domains on  [gi|445925283|ref|WP_000003138|]
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protein YkgH [Escherichia coli]

Protein Classification

YveK family protein( domain architecture ID 1002704)

YveK family protein similar to Bacillus subtilis uncharacterized protein YveK and capsular polysaccharide biosynthesis protein YwqC

Gene Ontology:  GO:0009103|GO:0004713

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YveK super family cl34698
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
9-96 8.65e-03

Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG3944:

Pssm-ID: 443144 [Multi-domain]  Cd Length: 309  Bit Score: 36.58  E-value: 8.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445925283   9 IDLIEILFYLKKKIRVILFIMAICMAMVLLFLYInkdnIKVIYSlkiNQTTpgILVNCDSNNNFACQTTMTEDVIQRITT 88
Cdd:COG3944    2 MDLREYLRILRRRWWLILLLTLLGALAALASSFL----ITPVYQ---ASTT--LLVSTSSGSDASDLYQGIQTAQQLVNT 72

                         90
                 ....*....|
gi 445925283  89 F--FHTSPDV 96
Cdd:COG3944   73 YaeLLKSPAV 82
 
Name Accession Description Interval E-value
YveK COG3944
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
9-96 8.65e-03

Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443144 [Multi-domain]  Cd Length: 309  Bit Score: 36.58  E-value: 8.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445925283   9 IDLIEILFYLKKKIRVILFIMAICMAMVLLFLYInkdnIKVIYSlkiNQTTpgILVNCDSNNNFACQTTMTEDVIQRITT 88
Cdd:COG3944    2 MDLREYLRILRRRWWLILLLTLLGALAALASSFL----ITPVYQ---ASTT--LLVSTSSGSDASDLYQGIQTAQQLVNT 72

                         90
                 ....*....|
gi 445925283  89 F--FHTSPDV 96
Cdd:COG3944   73 YaeLLKSPAV 82
 
Name Accession Description Interval E-value
YveK COG3944
Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];
9-96 8.65e-03

Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443144 [Multi-domain]  Cd Length: 309  Bit Score: 36.58  E-value: 8.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445925283   9 IDLIEILFYLKKKIRVILFIMAICMAMVLLFLYInkdnIKVIYSlkiNQTTpgILVNCDSNNNFACQTTMTEDVIQRITT 88
Cdd:COG3944    2 MDLREYLRILRRRWWLILLLTLLGALAALASSFL----ITPVYQ---ASTT--LLVSTSSGSDASDLYQGIQTAQQLVNT 72

                         90
                 ....*....|
gi 445925283  89 F--FHTSPDV 96
Cdd:COG3944   73 YaeLLKSPAV 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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