|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
6-464 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 720.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 6 WQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADaPQLRFEVGTKPVT 84
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLlSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAE-IEIEFTVGEDEEE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 85 QtlkAAASNTVAPAqaaqvqpqraapstrsgwdNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY 164
Cdd:TIGR00362 80 L---EPNSKKPEPA-------------------PPEAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAY 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 165 NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKER 244
Cdd:TIGR00362 138 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKER 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 245 SQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFI 324
Cdd:TIGR00362 218 TQEEFFHTFNALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFI 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 325 AKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVAR 404
Cdd:TIGR00362 298 AKNITSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLRAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVR 377
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 405 PRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTL 464
Cdd:TIGR00362 378 PRQIAMYLAKELTDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
1-466 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 711.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 1 MSLSLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTsfcgadapqlrfevg 79
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKaLSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 80 tkpvtqtlkaaasntvapaqaaqvqpqraapstrsgwdnvpapaeptyrsnVNVKHTFDNFVEGKSNQLARAAARQVADN 159
Cdd:PRK00149 66 ---------------------------------------------------LNPKYTFDNFVVGKSNRLAHAAALAVAEN 94
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 160 PGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFF 239
Cdd:PRK00149 95 PGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFL 174
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 240 ANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGE 319
Cdd:PRK00149 175 AGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDE 254
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 320 VAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLSKRRS 399
Cdd:PRK00149 255 VLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRT 334
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 445981242 400 RSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS 466
Cdd:PRK00149 335 RNIARPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
132-433 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 550.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 132 NVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 211
Cdd:COG0593 2 NPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFIN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 212 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 291
Cdd:COG0593 82 AIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLVV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 292 AIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEK 371
Cdd:COG0593 162 DIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQKK 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 445981242 372 LVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDH 433
Cdd:COG0593 242 EITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
132-349 |
1.28e-128 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 371.66 E-value: 1.28e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 132 NVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 211
Cdd:pfam00308 2 NPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFVD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 212 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 291
Cdd:pfam00308 82 AIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLVT 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 445981242 292 AIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFT 349
Cdd:pfam00308 162 DIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
375-464 |
9.25e-44 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 148.82 E-value: 9.25e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 375 IDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIK 454
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 445981242 455 EDFSNLIRTL 464
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
374-442 |
1.09e-37 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 131.86 E-value: 1.09e-37
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 445981242 374 TIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRK 442
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
6-464 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 720.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 6 WQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADaPQLRFEVGTKPVT 84
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLlSIEGNTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAE-IEIEFTVGEDEEE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 85 QtlkAAASNTVAPAqaaqvqpqraapstrsgwdNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY 164
Cdd:TIGR00362 80 L---EPNSKKPEPA-------------------PPEAPAPPSSASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAY 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 165 NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKER 244
Cdd:TIGR00362 138 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKER 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 245 SQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFI 324
Cdd:TIGR00362 218 TQEEFFHTFNALHENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFI 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 325 AKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVAR 404
Cdd:TIGR00362 298 AKNITSNVRELEGALNRLLAYASLTGKPITLELAKEALKDLLRAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVR 377
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 405 PRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTL 464
Cdd:TIGR00362 378 PRQIAMYLAKELTDLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
1-466 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 711.91 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 1 MSLSLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTsfcgadapqlrfevg 79
Cdd:PRK00149 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKaLSLEDNTLTLYVPNRFVKDWIEKNYLDLIEEALQ--------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 80 tkpvtqtlkaaasntvapaqaaqvqpqraapstrsgwdnvpapaeptyrsnVNVKHTFDNFVEGKSNQLARAAARQVADN 159
Cdd:PRK00149 66 ---------------------------------------------------LNPKYTFDNFVVGKSNRLAHAAALAVAEN 94
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 160 PGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFF 239
Cdd:PRK00149 95 PGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFL 174
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 240 ANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGE 319
Cdd:PRK00149 175 AGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDE 254
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 320 VAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLSKRRS 399
Cdd:PRK00149 255 VLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRT 334
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 445981242 400 RSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLSS 466
Cdd:PRK00149 335 RNIARPRQIAMYLAKELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
132-433 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 550.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 132 NVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 211
Cdd:COG0593 2 NPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFIN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 212 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 291
Cdd:COG0593 82 AIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLVV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 292 AIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQEK 371
Cdd:COG0593 162 DIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQKK 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 445981242 372 LVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDH 433
Cdd:COG0593 242 EITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
132-349 |
1.28e-128 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 371.66 E-value: 1.28e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 132 NVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVK 211
Cdd:pfam00308 2 NPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFVD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 212 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 291
Cdd:pfam00308 82 AIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLVT 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 445981242 292 AIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFT 349
Cdd:pfam00308 162 DIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSLN 219
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
95-453 |
1.95e-121 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 367.61 E-value: 1.95e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 95 VAPAQAAQVQPQRAAPSTRSGW-DNVPAPAEPTYRsnVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAYNPLFLYGGT 173
Cdd:PRK14086 246 PERDDAPVVPIRPSAPGPLAAQpAPAPGPGEPTAR--LNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGES 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 174 GLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTF 253
Cdd:PRK14086 324 GLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTF 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 254 NALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVR 333
Cdd:PRK14086 404 NTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIR 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 334 ELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKL-VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAL 412
Cdd:PRK14086 484 ELEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPEDSAPeITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYL 563
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 445981242 413 AKELTNHSLPEIGDAFgGRDHTTVLHACRKIEQLREESHDI 453
Cdd:PRK14086 564 CRELTDLSLPKIGQQF-GRDHTTVMHADRKIRALMAERRSI 603
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
6-466 |
4.09e-77 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 247.83 E-value: 4.09e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 6 WQQCLARLQDELPATEFSMWIRPLQAELSDN-TLALYAPNRFVLDWVRDKYLNNINgllTSFCGADAPQLRFEVGTKPVT 84
Cdd:PRK12422 4 WEEFLLLQEKEIGTETVDKWLRSLKVLCFDAcNLYLEAKDSFQVTWFEEHIRHKVK---ASLVNNNGKPIRVHVTSLDKS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 85 QTLKAAAsntvapaqaaQVQPQRAAPSTRsgwdnvpapaepTYrSNVNVKHTFDNFVEGKSNQLARAAARQVA----DNP 160
Cdd:PRK12422 81 TPFKKEK----------QIQQEKTAYFTM------------KY-GELDPLMTFANFLVTPENDLPHRILQEFTkvseQGK 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 161 GGAYNPLFLYGGTGLGKTHLLHAVGNGImaRKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 240
Cdd:PRK12422 138 GFPFNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFS 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 241 NKERSQEEFFHTFNAL-LEGnQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGE 319
Cdd:PRK12422 216 GKGATQEEFFHTFNSLhTEG-KLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEET 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 320 VAFFIAKRLRSNVRELEGALNRV---IANANFTGRAITIDFVREALRDLLALQEKL-VTIDNIQKTVAEYYKIKVADLLS 395
Cdd:PRK12422 295 ALDFLIEALSSNVKSLLHALTLLakrVAYKKLSHQLLYVDDIKALLHDVLEAAESVrLTPSKIIRAVAQYYGVSPESILG 374
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 445981242 396 KRRSRSVARPRQMAMALAKELTNHSLPEIGDAFgGRDHTTVLHACRKIEQ-LREESHDIKEDFSNLIRTLSS 466
Cdd:PRK12422 375 RSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVF-SRDHSTVISSIRAISQkLEEDDRDISMAIQEITKRLSS 445
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
375-464 |
9.25e-44 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 148.82 E-value: 9.25e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 375 IDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIK 454
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 445981242 455 EDFSNLIRTL 464
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
375-443 |
1.61e-40 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 139.46 E-value: 1.61e-40
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 445981242 375 IDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 443
Cdd:pfam08299 1 IEKIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
374-442 |
1.09e-37 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 131.86 E-value: 1.09e-37
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 445981242 374 TIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRK 442
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| DnaA_homol_Hda |
TIGR03420 |
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). ... |
136-363 |
7.40e-33 |
|
DnaA regulatory inactivator Hda; Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274571 [Multi-domain] Cd Length: 226 Bit Score: 124.22 E-value: 7.40e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 136 TFDNFVEGkSNQLARAAARQVADNPGGayNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAkvVYMHSERFVQDMVKALqn 215
Cdd:TIGR03420 13 TFDNFYAG-GNAELLAALRQLAAGKGD--RFLYLWGESGSGKSHLLQAACAAAEERGKSA--IYLPLAELAQADPEVL-- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 216 NAIEEFkryyrsvDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 295
Cdd:TIGR03420 86 EGLEQA-------DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 445981242 296 PELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALR 363
Cdd:TIGR03420 159 LSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVLA 226
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
146-289 |
2.36e-19 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 84.51 E-value: 2.36e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 146 NQLARAAARQVADNPggAYNPLFLYGGTGLGKTHLLHAVGNGImaRKPNAKVVYMHSERFVQDMVKALQ----NNAIEEF 221
Cdd:cd00009 3 QEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANEL--FRPGAPFLYLNASDLLEGLVVAELfghfLVRLLFE 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 445981242 222 KRYYRSVDALLIDDIQFFANKERSQ-EEFFHTFNALLE--GNQQIILTSDR--YPKEINGVEDRLKSRFGWGL 289
Cdd:cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNAlLRVLETLNDLRIdrENVRVIGATNRplLGDLDRALYDRLDIRIVIPL 151
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
136-363 |
4.99e-19 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 85.89 E-value: 4.99e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 136 TFDNFVEGKSNQLArAAARQVADNPGGAYnpLFLYGGTGLGKTHLLHAVGNGIMARkpNAKVVYMHSER---FVQDMVKA 212
Cdd:PRK08084 20 TFASFYPGDNDSLL-AALQNALRQEHSGY--IYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKrawFVPEVLEG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 213 LQnnaieefkryyrSVDALLIDDIQFFANKERSQEEFFHTFNALLE-GNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 291
Cdd:PRK08084 95 ME------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILEsGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIY 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 445981242 292 AIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALR 363
Cdd:PRK08084 163 KLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234
|
|
| DnaA_N |
pfam11638 |
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a ... |
4-65 |
1.19e-18 |
|
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a protein involved in the initiation of bacterial chromosomal replication. The structure of this domain is known. It is also found in three copies in some proteins. The exact function of this domain is uncertain but it has been suggested to play a role in oligomerization.
Pssm-ID: 463316 [Multi-domain] Cd Length: 65 Bit Score: 79.63 E-value: 1.19e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 445981242 4 SLWQQCLARLQDELPATEFSMWIRPLQAELSDNT--LALYAPNRFVLDWVRDKYLNNINGLLTS 65
Cdd:pfam11638 2 ELWERVLERLRKEVGEQTFNTWIKPLTLVDLDDGgsLTLSVPNRFVRDWVEEHYLDRILELWQE 65
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
136-362 |
1.10e-14 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 73.09 E-value: 1.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 136 TFDNFVEGKSNQLARAAARQVADNPGGAYnpLFLYGGTGLGKTHLLHAVGNGIMARKPNAkvVYmhserfvqdmvkaLQN 215
Cdd:PRK08903 16 TFDNFVAGENAELVARLRELAAGPVADRF--FYLWGEAGSGRSHLLQALVADASYGGRNA--RY-------------LDA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 216 NAIEEFKRYYRSVDALLIDDIQFFANKErsQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 295
Cdd:PRK08903 79 ASPLLAFDFDPEAELYAVDDVERLDDAQ--QIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 445981242 296 PELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREAL 362
Cdd:PRK08903 157 LSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREML 223
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
382-449 |
1.57e-11 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 61.33 E-value: 1.57e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 445981242 382 VAEYYKIKVADLLS-KRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGgRDHTTVLHACRKIEQLREE 449
Cdd:PRK06030 32 LALAFGVSGAEIASpLRGRREVSRIRQIAMYVAHVSLGWPMNEVALAFG-RDRTTVGHACHTVEDLRDD 99
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
136-267 |
2.67e-11 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 63.65 E-value: 2.67e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 136 TFDNFVEGKSNQLARAAARQVADnpgGAY----NPLFLYGGTGLGKTHLLHAVGN-GIMARKpnaKVVYMHSERFVQDMV 210
Cdd:COG1484 70 TLEDFDFDAQPGLDRRQILELAT---LDFiergENLILLGPPGTGKTHLAIALGHeACRAGY---RVRFTTAPDLVNELK 143
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 445981242 211 KALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEgNQQIILTS 267
Cdd:COG1484 144 EARADGRLERLLKRLAKVDLLILDELGYLPLDAEGAELLFELISDRYE-RRSTIITS 199
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
165-285 |
8.08e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.61 E-value: 8.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 165 NPLFLYGGTGLGKTHLLHAVGNgiMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRY---------------YRSVD 229
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASgsgelrlrlalalarKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 445981242 230 ALLIDDIQFFANKERSQEEFFHTFNALL-----EGNQQIILTSDRYPKEIngvEDRLKSRF 285
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLEELRLLlllksEKNLTVILTTNDEKDLG---PALLRRRF 138
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
129-285 |
9.50e-08 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 53.75 E-value: 9.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 129 SNVNVKHTFDNF--------VEGKSNQLARAAARQVA----------DNPGGAynpLFLYGGTGLGKTHLLHAVGNGIMA 190
Cdd:PRK06835 133 KEILKEENFSNFnlnyysdeKDDDEPLSPRKNMEKILekcknfienfDKNNEN---LLFYGNTGTGKTFLSNCIAKELLD 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 191 RKpnAKVVYMHSERFVQDMVKA-LQNNAIEEFKR-YYRSVDALLIDDIQFFANKERSQEEFFHTFNA-LLEGNQQIILT- 266
Cdd:PRK06835 210 RG--KSVIYRTADELIEILREIrFNNDKELEEVYdLLINCDLLIIDDLGTEKITEFSKSELFNLINKrLLRQKKMIISTn 287
|
170 180
....*....|....*....|....*
gi 445981242 267 ------SDRYPKEINGvedRLKSRF 285
Cdd:PRK06835 288 lsleelLKTYSERISS---RLLGNF 309
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
167-236 |
1.27e-06 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 49.87 E-value: 1.27e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 167 LFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSerFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 236
Cdd:PRK08939 159 LYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE--FIRELKNSISDGSVKEKIDAVKEAPVLMLDDI 226
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
134-293 |
4.61e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 48.24 E-value: 4.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 134 KHTFDNFV-EGKSNQLARA---AARQVADNP---GGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFV 206
Cdd:PRK06921 80 KLTFKNFKtEGKPQAIKDAyecAVEYVKDFEkiqESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 207 QdmvkaLQNN--AIEEFKRYYRSVDALLIDDIQFFANKERSQEEF-----FHTFNALLEGNQQIILTSDRYPKEINGVED 279
Cdd:PRK06921 160 D-----LKDDfdLLEAKLNRMKKVEVLFIDDLFKPVNGKPRATEWqieqmYSVLNYRYLNHKPILISSELTIDELLDIDE 234
|
170
....*....|....*..
gi 445981242 280 RLKSRF---GWGLTVAI 293
Cdd:PRK06921 235 ALGSRIvemCKDYLVII 251
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
136-284 |
1.13e-05 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 46.94 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 136 TFDNF-VEGKSNQLARAAARQV-------ADNPGgaynpLFLYGGTGLGKTHLLHAVGNGIMARKpnAKVVYMHSERFVQ 207
Cdd:PRK08116 83 TFENFlFDKGSEKAYKIARKYVkkfeemkKENVG-----LLLWGSVGTGKTYLAACIANELIEKG--VPVIFVNFPQLLN 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 208 DMVKALQNNAIEEFKRYYRSV---DALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEI-NGVEDRLKS 283
Cdd:PRK08116 156 RIKSTYKSSGKEDENEIIRSLvnaDLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELkNQYGKRIYD 235
|
.
gi 445981242 284 R 284
Cdd:PRK08116 236 R 236
|
|
| PRK06620 |
PRK06620 |
hypothetical protein; Validated |
126-362 |
1.25e-05 |
|
hypothetical protein; Validated
Pssm-ID: 168630 Cd Length: 214 Bit Score: 46.37 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 126 TYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGgaYNP----LFLYGGTGLGKTHLlhavgNGIMARKPNAkvvYMH 201
Cdd:PRK06620 4 IFRFTTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFG--VNPykftLLIKGPSSSGKTYL-----TKIWQNLSNA---YII 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 202 SERFVqdmvkalqnnaIEEFkryYRSVDALLIDDIQFFANKErsqeeFFHTFNALLEGNQQIILTSDRYPKeiNGVEDRL 281
Cdd:PRK06620 74 KDIFF-----------NEEI---LEKYNAFIIEDIENWQEPA-----LLHIFNIINEKQKYLLLTSSDKSR--NFTLPDL 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 282 KSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREA 361
Cdd:PRK06620 133 SSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEV 212
|
.
gi 445981242 362 L 362
Cdd:PRK06620 213 L 213
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
134-236 |
4.37e-05 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 44.83 E-value: 4.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 134 KHTFDNF-VEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYmhserfVQDMVKA 212
Cdd:PRK12377 70 KCSFANYqVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT------VPDVMSR 143
|
90 100
....*....|....*....|....*....
gi 445981242 213 LQN-----NAIEEFKRYYRSVDALLIDDI 236
Cdd:PRK12377 144 LHEsydngQSGEKFLQELCKVDLLVLDEI 172
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
136-236 |
7.98e-04 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 40.91 E-value: 7.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 136 TFDNF-VEGKSNQLARAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYmhserfVQDMVKALQ 214
Cdd:PRK07952 70 SFENYrVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT------VADIMSAMK 143
|
90 100
....*....|....*....|....*...
gi 445981242 215 ------NNAIEEFKRYYRSVDALLIDDI 236
Cdd:PRK07952 144 dtfsnsETSEEQLLNDLSNVDLLVIDEI 171
|
|
| PRK06672 |
PRK06672 |
hypothetical protein; Validated |
2-78 |
1.59e-03 |
|
hypothetical protein; Validated
Pssm-ID: 180654 [Multi-domain] Cd Length: 341 Bit Score: 40.52 E-value: 1.59e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 445981242 2 SLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGaDAPQLRFEV 78
Cdd:PRK06672 191 SKTIWNKIKDKMQLKISRPSYETWVKETTARINEDSLIIYFENEFQQEWVKKSYKDLISQIAKELTG-NTYEIQFEL 266
|
|
| PRK06672 |
PRK06672 |
hypothetical protein; Validated |
3-85 |
8.37e-03 |
|
hypothetical protein; Validated
Pssm-ID: 180654 [Multi-domain] Cd Length: 341 Bit Score: 38.20 E-value: 8.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445981242 3 LSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADApQLRFEVGTKP 82
Cdd:PRK06672 92 LSSWDEVKKALRPKIAEKTFMTWIRNTNATIKDNKVIIFCEDAFHRDLLEGEYKNIISSTVQKITDEEY-QIWFEIGSSA 170
|
...
gi 445981242 83 VTQ 85
Cdd:PRK06672 171 TSK 173
|
|
| |
