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flagellar biosynthesis protein FlhA [Escherichia coli]
Protein Classification
flagellar biosynthesis protein FlhA ( domain architecture ID 10012637 )
flagellar biosynthesis protein FlhA is required for formation of the rod structure of the flagellar apparatus
List of domain hits
Name
Accession
Description
Interval
E-value
flhA
PRK06012 flagellar type III secretion system protein FlhA;
2-691
0e+00
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 1123.67
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 2 S NLAAMLRLP A NLK STQ W QI LA GP IL I L L IL S MM V LPLP A F I LDLL F TFNIALS IMV LLVA M F T QR T L E F A AFPT I LL F T 81
Cdd:PRK06012 1 A NLAAMLRLP G NLK LLK W RD LA VA IL V L A IL A MM I LPLP P F L LDLL L TFNIALS VLI LLVA L F I QR P L D F S AFPT L LL I T 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 82 TLLRLALNVASTR I IL M EGH T G AA AAGKV V EAFGHF L VGGNF AI GIVVF V ILVIINF M VITKGAGRIAEV G ARF V LD G MP 161
Cdd:PRK06012 81 TLLRLALNVASTR L IL L EGH E G TD AAGKV I EAFGHF V VGGNF VV GIVVF I ILVIINF V VITKGAGRIAEV A ARF T LD A MP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 162 GKQMAIDADLNAGLI G E D EAKKRR S E VT QEADFYG S MDGASKFV R GDAIAGILI M VIN VV GGL LV GV L QHGMS M G H AAE S 241
Cdd:PRK06012 161 GKQMAIDADLNAGLI D E E EAKKRR K E LQ QEADFYG A MDGASKFV K GDAIAGILI T VIN II GGL II GV V QHGMS F G E AAE T 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 242 YTLLTIGDGLV A QIPAL V ISTAAG V IVTRVS T D Q DVGEQ M V N QLF S NP SVMLLS A A VL G LLGLVPGMP N L V FLL FTAG L L 321
Cdd:PRK06012 241 YTLLTIGDGLV S QIPAL L ISTAAG I IVTRVS S D G DVGEQ I V G QLF A NP KALYIA A G VL F LLGLVPGMP H L P FLL LAGL L G 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 322 G LA WWI R G RE Q KA PAEPKPVKMA E - NNSVV E AT W N DV QLE D S L GM EVGY R LIP M VD FQ Q D GELL G RIRSIRKK F AQE M GF 400
Cdd:PRK06012 321 F LA YRL R K RE K KA AELAAEEAEE E e AAEPE E ES W D DV LPV D P L EL EVGY G LIP L VD EN Q G GELL D RIRSIRKK I AQE L GF 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 401 L P P V V H IRDN MD L Q P AR YRI LM KGVE M GSG DAY PGR W LA I NPG TAA G T LPG EA T VD PAFGL N A I WI ES AL K EQAQ IQ GYT 480
Cdd:PRK06012 401 L V P P V R IRDN LQ L P P NE YRI KI KGVE V GSG ELR PGR L LA M NPG GVD G E LPG IP T KE PAFGL P A V WI DE AL R EQAQ LL GYT 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 481 VV EA STVVATHL NHL I SQ HAAEL F GRQE A QQLLDR V A Q E M PKL T E D LVP G V VT L T TL H KVLQNLL D E K V P IRD M RTILET 560
Cdd:PRK06012 481 VV DP STVVATHL TEV I KN HAAEL L GRQE V QQLLDR L A K E Y PKL V E E LVP K V LS L G TL Q KVLQNLL K E R V S IRD L RTILET 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 561 LA EH API QS DP H ELT AV VR VA LGR A I T QQ WFPGKD E VH VI G LD TP LE R LLLQ A LQG G GG ----- LEPGLA D RLL AQT QEA 635
Cdd:PRK06012 561 LA DY API TK DP D ELT EH VR QR LGR Q I V QQ YKGEDG E LP VI T LD PE LE Q LLLQ S LQG T GG gsyla LEPGLA E RLL QSL QEA 640
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 445989118 636 L S RQEM L G A PPVLLV NH ALRP L L S R F L R R S LPQL V VLS NL E LS DN RH IR MTA T I G G 691
Cdd:PRK06012 641 L E RQEM K G E PPVLLV SP ALRP Y L R R L L E R F LPQL P VLS YN E IP DN IE IR IVG T V G I 696
Name
Accession
Description
Interval
E-value
flhA
PRK06012 flagellar type III secretion system protein FlhA;
2-691
0e+00
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 1123.67
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 2 S NLAAMLRLP A NLK STQ W QI LA GP IL I L L IL S MM V LPLP A F I LDLL F TFNIALS IMV LLVA M F T QR T L E F A AFPT I LL F T 81
Cdd:PRK06012 1 A NLAAMLRLP G NLK LLK W RD LA VA IL V L A IL A MM I LPLP P F L LDLL L TFNIALS VLI LLVA L F I QR P L D F S AFPT L LL I T 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 82 TLLRLALNVASTR I IL M EGH T G AA AAGKV V EAFGHF L VGGNF AI GIVVF V ILVIINF M VITKGAGRIAEV G ARF V LD G MP 161
Cdd:PRK06012 81 TLLRLALNVASTR L IL L EGH E G TD AAGKV I EAFGHF V VGGNF VV GIVVF I ILVIINF V VITKGAGRIAEV A ARF T LD A MP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 162 GKQMAIDADLNAGLI G E D EAKKRR S E VT QEADFYG S MDGASKFV R GDAIAGILI M VIN VV GGL LV GV L QHGMS M G H AAE S 241
Cdd:PRK06012 161 GKQMAIDADLNAGLI D E E EAKKRR K E LQ QEADFYG A MDGASKFV K GDAIAGILI T VIN II GGL II GV V QHGMS F G E AAE T 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 242 YTLLTIGDGLV A QIPAL V ISTAAG V IVTRVS T D Q DVGEQ M V N QLF S NP SVMLLS A A VL G LLGLVPGMP N L V FLL FTAG L L 321
Cdd:PRK06012 241 YTLLTIGDGLV S QIPAL L ISTAAG I IVTRVS S D G DVGEQ I V G QLF A NP KALYIA A G VL F LLGLVPGMP H L P FLL LAGL L G 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 322 G LA WWI R G RE Q KA PAEPKPVKMA E - NNSVV E AT W N DV QLE D S L GM EVGY R LIP M VD FQ Q D GELL G RIRSIRKK F AQE M GF 400
Cdd:PRK06012 321 F LA YRL R K RE K KA AELAAEEAEE E e AAEPE E ES W D DV LPV D P L EL EVGY G LIP L VD EN Q G GELL D RIRSIRKK I AQE L GF 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 401 L P P V V H IRDN MD L Q P AR YRI LM KGVE M GSG DAY PGR W LA I NPG TAA G T LPG EA T VD PAFGL N A I WI ES AL K EQAQ IQ GYT 480
Cdd:PRK06012 401 L V P P V R IRDN LQ L P P NE YRI KI KGVE V GSG ELR PGR L LA M NPG GVD G E LPG IP T KE PAFGL P A V WI DE AL R EQAQ LL GYT 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 481 VV EA STVVATHL NHL I SQ HAAEL F GRQE A QQLLDR V A Q E M PKL T E D LVP G V VT L T TL H KVLQNLL D E K V P IRD M RTILET 560
Cdd:PRK06012 481 VV DP STVVATHL TEV I KN HAAEL L GRQE V QQLLDR L A K E Y PKL V E E LVP K V LS L G TL Q KVLQNLL K E R V S IRD L RTILET 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 561 LA EH API QS DP H ELT AV VR VA LGR A I T QQ WFPGKD E VH VI G LD TP LE R LLLQ A LQG G GG ----- LEPGLA D RLL AQT QEA 635
Cdd:PRK06012 561 LA DY API TK DP D ELT EH VR QR LGR Q I V QQ YKGEDG E LP VI T LD PE LE Q LLLQ S LQG T GG gsyla LEPGLA E RLL QSL QEA 640
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 445989118 636 L S RQEM L G A PPVLLV NH ALRP L L S R F L R R S LPQL V VLS NL E LS DN RH IR MTA T I G G 691
Cdd:PRK06012 641 L E RQEM K G E PPVLLV SP ALRP Y L R R L L E R F LPQL P VLS YN E IP DN IE IR IVG T V G I 696
FlhA
COG1298 Flagellar biosynthesis protein FlhA [Cell motility];
22-690
0e+00
Flagellar biosynthesis protein FlhA [Cell motility];
Pssm-ID: 440909 [Multi-domain]
Cd Length: 676
Bit Score: 1069.28
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 22 LA G P ILILL IL S MM V LPLP A F I LDLL FT FNIALS IMV LLVA MFTQ R T L E F AA FPT I LL F TTL L RL A LNVASTR I IL M EGH 101
Cdd:COG1298 1 LA V P LGVIA IL A MM I LPLP P F L LDLL LA FNIALS LLI LLVA LYIK R P L D F SV FPT L LL I TTL F RL S LNVASTR L IL L EGH 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 102 T G AA AAGKV V EAFG H F L VGGN FAI G I VVF V ILVIINF M VITKGAGRIAEV G ARF V LD G MPGKQMAIDADLNAGLI G E D EA 181
Cdd:COG1298 81 E G TD AAGKV I EAFG E F V VGGN YVV G L VVF L ILVIINF V VITKGAGRIAEV A ARF T LD A MPGKQMAIDADLNAGLI D E E EA 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 182 KK RR S E VTQ EADFYG S MDGASKFVRGDAIAGILI MV IN VV GGL LV GVLQHGMS M G H AA ES YTLLTIGDGLV A QIPAL V IS 261
Cdd:COG1298 161 RR RR E E IQR EADFYG A MDGASKFVRGDAIAGILI TL IN II GGL II GVLQHGMS F G E AA QT YTLLTIGDGLV S QIPAL L IS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 262 TAAG V IVTR VSTDQ D V GEQ MVN QLF S NP SVMLLS A A VLGLLGL V PGMP N L V FLL FT A G L L GLA WWIRG R EQKAP AE PKPV 341
Cdd:COG1298 241 TAAG I IVTR AGSEG D L GEQ LSG QLF A NP KALYIA A G VLGLLGL I PGMP H L P FLL LA A L L G GLA YRLKK R QKEEE AE EAAA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 342 KMAEN -- NSVV E ATWN D VQLE D S L GM E V GY R LIP M VD FQ Q D G E LL G RI RS IR KKF AQE M GF LP P V V H IRDN MD L Q P AR YR 419
Cdd:COG1298 321 AAEAE aa AEPA E ESVD D LLPV D P L EL E L GY G LIP L VD ES Q G G D LL D RI KG IR RQL AQE L GF VV P P V R IRDN LQ L K P NE YR 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 420 I LM KGVE MGS G DAY P G R W LAINPG TAA G T LPG EA T VD PAFGL N A I WI ESALK E Q A QIQ GYTVV EA STV V ATHL NHL I SQ H 499
Cdd:COG1298 401 I KI KGVE VAR G ELR P D R L LAINPG GVT G E LPG IP T KE PAFGL P A V WI DPEQR E E A ELL GYTVV DP STV I ATHL SEV I KR H 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 500 AAEL F GRQE A QQLLDR VAQ E M PKL T E D LVP GVVT L TT L H KVLQNLL D E K V P IRD M RTILETLA EH AP IQS DP HE LT AV VR 579
Cdd:COG1298 481 AAEL L GRQE V QQLLDR LKK E Y PKL V E E LVP KLLS L GE L Q KVLQNLL R E R V S IRD L RTILETLA DY AP RTK DP DL LT EH VR 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 580 V ALGR A I T QQ WFPGKD E VH VI G LD TP LE R LLL QA LQ GGG ----- G L E PGLA D RLL AQTQ EA LSRQ E ML G A PPVLLV NHA L 654
Cdd:COG1298 561 Q ALGR Q I V QQ YAGPDG E LP VI T LD PE LE Q LLL ES LQ QTE qgsyl A L D PGLA Q RLL QSLA EA VEKL E AQ G E PPVLLV SPQ L 640
650 660 670
....*....|....*....|....*....|....*.
gi 445989118 655 RP L L S R F L R R S LP Q L V VLS NL E LSDNRH I RMTA T I G 690
Cdd:COG1298 641 RP Y L R R L L E R F LP D L P VLS YN E IPPDVE I ESVG T V G 676
FHIPEP
pfam00771 FHIPEP family;
31-680
0e+00
FHIPEP family;
Pssm-ID: 459933
Cd Length: 645
Bit Score: 971.09
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 31 IL S MM V LPLP A F I LDLL FT FNIALS IMV LLVA MFTQ R T L E F AA FPT I LL F TTL L RLALNVASTR I IL ME GH T gaa AAGKV 110
Cdd:pfam00771 1 IL A MM I LPLP P F L LDLL LA FNIALS LLI LLVA LYIK R P L D F SV FPT L LL I TTL F RLALNVASTR L IL LH GH E --- AAGKV 77
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 111 V EAFG H F L VGGN FAI G I VVF V ILVI IN F M VITKGA G R I AEV G ARF V LD G MPGKQMAIDADLNAGLI G E D EA KK RR S E VTQ 190
Cdd:pfam00771 78 I EAFG Q F V VGGN YVV G L VVF L ILVI VQ F I VITKGA E R V AEV A ARF T LD A MPGKQMAIDADLNAGLI D E E EA RR RR E E LQR 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 191 EADFYG S MDGASKFV R GDAIAGI L I MV IN VV GGL LV GVLQHGMS M G H AA ES YTLLTIGDGLV A QIPAL V ISTAAG V IVTR 270
Cdd:pfam00771 158 EADFYG A MDGASKFV K GDAIAGI I I TL IN II GGL II GVLQHGMS F G E AA QT YTLLTIGDGLV S QIPAL L ISTAAG I IVTR 237
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 271 V STDQDV GE QM V N QLF S NP SVMLLS A A VL G LLGL V PG M P N L V FLL FT A G L LG LA WWI R G R EQ KA P AE PKPVKM A ENNS V V 350
Cdd:pfam00771 238 V ASEGNL GE EI V G QLF A NP KALYIA A G VL L LLGL I PG L P T L P FLL LA A L L GF LA YRL R R R KK KA A AE EAEAEE A AAAA V L 317
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 351 EA twndvqle D S L GM E V GY R LIP M VD FQ Q D G E LL G RI RS IR KKF A Q E M GF LP P VVH IRDN MD L Q P AR YRI LM KGVE MGS G 430
Cdd:pfam00771 318 PV -------- D P L EL E L GY G LIP L VD ES Q G G D LL D RI KG IR RQL A L E L GF VV P PIR IRDN LQ L K P NE YRI KI KGVE VAR G 389
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 431 DAY P GRW LA I NPG TAA G TL PG EA T VD PAFGL N A I WI ESALK E Q A QIQ GYTVV EAS TV V ATHL NHL I SQ HAAEL F GRQE A Q 510
Cdd:pfam00771 390 ELL P DHL LA M NPG GVL G EI PG IP T KE PAFGL P A V WI DEEQR E E A ELA GYTVV DPP TV I ATHL TEV I KR HAAEL L GRQE V Q 469
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 511 Q LLD RVAQ E M PKL T E D LVP GVVT L TTLH KVLQNLL D E K V P IRD M RTILETLA EH AP IQS DP HE LT AV VR V ALGR A I T QQ W 590
Cdd:pfam00771 470 A LLD NLKK E Y PKL V E E LVP KLLS L GEIQ KVLQNLL R E R V S IRD L RTILETLA DY AP KTK DP DL LT EY VR Q ALGR Q I C QQ Y 549
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 591 FPGKDEVH VI G LD TP LE R LL LQA LQ GGG G ------ L E P G LA D RLL AQTQ EA LSRQ E ML G A PPVLL VNHAL R PL L S R F L R R 664
Cdd:pfam00771 550 AGEDGTLP VI T LD PE LE Q LL RES LQ QSE G qgsyla L D P D LA Q RLL EALS EA VEKL E QQ G E PPVLL TSPDI R RY L R R L L E R 629
650
....*....|....*.
gi 445989118 665 S LP Q L V VLS NL E LSDN 680
Cdd:pfam00771 630 F LP D L P VLS YN E IPPD 645
FlhA
TIGR01398 flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, ...
19-689
0e+00
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 273599 [Multi-domain]
Cd Length: 678
Bit Score: 964.42
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 19 WQI L AGP I LILL IL SM M V LPLPAF I LD L L FTF NIALS IMV LLV AM F T Q RT L E F AA FPT I LL FT TL L RL A LNVASTR I IL M 98
Cdd:TIGR01398 1 GRD L LLA I GVVA IL AV M I LPLPAF L LD I L LAL NIALS LLI LLV TL F I Q KP L D F SS FPT L LL IA TL F RL S LNVASTR L IL T 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 99 E GH T G AA AAGKV V EAFG H F L VGGN FA IG IV VF V IL V I I NF M VITKGA G RIAEV G ARF V LD G MPGKQMAIDADLNAGLI G E 178
Cdd:TIGR01398 81 H GH E G PN AAGKV I EAFG Q F V VGGN YV IG LI VF I IL I I V NF I VITKGA T RIAEV A ARF T LD A MPGKQMAIDADLNAGLI T E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 179 D EAKKRR S E VT QEADFYG S MDGASKFV R GDAIAGI L I MV IN VV GGL LV GV L QHGMS MGH AA ES YT L LTIGDGLVAQIPAL 258
Cdd:TIGR01398 161 E EAKKRR E E LE QEADFYG A MDGASKFV K GDAIAGI I I TL IN II GGL II GV V QHGMS LSD AA ST YT I LTIGDGLVAQIPAL 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 259 V ISTA A G V IVTR V S TDQDV G EQM V N QL FS NP SVM L LS AAVLGLL G LVPG M P NLV FL LFTAG L LG LAW WI R G R EQKAPAEP 338
Cdd:TIGR01398 241 I ISTA T G L IVTR A S SEGSF G KAI V T QL GA NP RAL L IV AAVLGLL A LVPG L P TFP FL FLAGA L AF LAW YL R R R SKQEEEAA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 339 K -- PVKMA E NNSVV E ATW ND VQLE D S L GM E V GY R LIP M VD FQ Q D G E LL G RIRSIRK KF AQE M GF LP PV VH IRDN MD L Q P A 416
Cdd:TIGR01398 321 A ea AKAQE E AAEEE E ESI ND ILAL D D L EL E L GY G LIP L VD DS Q G G D LL D RIRSIRK QL AQE Y GF VM PV IR IRDN LR L P P N 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 417 R YRI LM KGVE MGS G DAY PG RW LA I NPG T A A G TL PGE A T VD PAFGL N A I WI ESAL KE Q A QIQ GYTVV EAS TV V ATHL NHL I 496
Cdd:TIGR01398 401 E YRI KI KGVE VAR G ELR PG KY LA M NPG N A D G EI PGE E T RE PAFGL P A Y WI SEKN KE E A ERL GYTVV DPA TV L ATHL SEV I 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 497 SQH AAEL FG RQE A Q Q LLDR VAQ E M PKL T E D L V P GV V T L T T LH KVLQ N LL D E K V P IR DMR TILETLA EH API QS DP HE L TA 576
Cdd:TIGR01398 481 KNN AAEL LT RQE V Q N LLDR LKE E Y PKL V E E L I P DK V P L G T IQ KVLQ L LL R E R V S IR NLP TILETLA DY API TK DP DL L VE 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 577 V VR VA LGR A ITQQ WFPGKDEVH VI G LD TP LE RL L LQ AL QGG G ----- G LEP G L ADR L LAQTQE A LSRQEML G AP PVLL VN 651
Cdd:TIGR01398 561 H VR QR LGR Q ITQQ YLDEDGVLP VI T LD PD LE AA L AE AL KRD G egell D LEP A L LEE L VRAVRK A VEKLANN G ER PVLL TS 640
650 660 670
....*....|....*....|....*....|....*...
gi 445989118 652 HAL RP LLS R F L R R SL P Q L V VLS NL E LS DN RHIRMTATI 689
Cdd:TIGR01398 641 PRV RP YVR R I L E R FF P E L P VLS YN E IP DN VRVETVGVV 678
Name
Accession
Description
Interval
E-value
flhA
PRK06012 flagellar type III secretion system protein FlhA;
2-691
0e+00
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 1123.67
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 2 S NLAAMLRLP A NLK STQ W QI LA GP IL I L L IL S MM V LPLP A F I LDLL F TFNIALS IMV LLVA M F T QR T L E F A AFPT I LL F T 81
Cdd:PRK06012 1 A NLAAMLRLP G NLK LLK W RD LA VA IL V L A IL A MM I LPLP P F L LDLL L TFNIALS VLI LLVA L F I QR P L D F S AFPT L LL I T 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 82 TLLRLALNVASTR I IL M EGH T G AA AAGKV V EAFGHF L VGGNF AI GIVVF V ILVIINF M VITKGAGRIAEV G ARF V LD G MP 161
Cdd:PRK06012 81 TLLRLALNVASTR L IL L EGH E G TD AAGKV I EAFGHF V VGGNF VV GIVVF I ILVIINF V VITKGAGRIAEV A ARF T LD A MP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 162 GKQMAIDADLNAGLI G E D EAKKRR S E VT QEADFYG S MDGASKFV R GDAIAGILI M VIN VV GGL LV GV L QHGMS M G H AAE S 241
Cdd:PRK06012 161 GKQMAIDADLNAGLI D E E EAKKRR K E LQ QEADFYG A MDGASKFV K GDAIAGILI T VIN II GGL II GV V QHGMS F G E AAE T 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 242 YTLLTIGDGLV A QIPAL V ISTAAG V IVTRVS T D Q DVGEQ M V N QLF S NP SVMLLS A A VL G LLGLVPGMP N L V FLL FTAG L L 321
Cdd:PRK06012 241 YTLLTIGDGLV S QIPAL L ISTAAG I IVTRVS S D G DVGEQ I V G QLF A NP KALYIA A G VL F LLGLVPGMP H L P FLL LAGL L G 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 322 G LA WWI R G RE Q KA PAEPKPVKMA E - NNSVV E AT W N DV QLE D S L GM EVGY R LIP M VD FQ Q D GELL G RIRSIRKK F AQE M GF 400
Cdd:PRK06012 321 F LA YRL R K RE K KA AELAAEEAEE E e AAEPE E ES W D DV LPV D P L EL EVGY G LIP L VD EN Q G GELL D RIRSIRKK I AQE L GF 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 401 L P P V V H IRDN MD L Q P AR YRI LM KGVE M GSG DAY PGR W LA I NPG TAA G T LPG EA T VD PAFGL N A I WI ES AL K EQAQ IQ GYT 480
Cdd:PRK06012 401 L V P P V R IRDN LQ L P P NE YRI KI KGVE V GSG ELR PGR L LA M NPG GVD G E LPG IP T KE PAFGL P A V WI DE AL R EQAQ LL GYT 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 481 VV EA STVVATHL NHL I SQ HAAEL F GRQE A QQLLDR V A Q E M PKL T E D LVP G V VT L T TL H KVLQNLL D E K V P IRD M RTILET 560
Cdd:PRK06012 481 VV DP STVVATHL TEV I KN HAAEL L GRQE V QQLLDR L A K E Y PKL V E E LVP K V LS L G TL Q KVLQNLL K E R V S IRD L RTILET 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 561 LA EH API QS DP H ELT AV VR VA LGR A I T QQ WFPGKD E VH VI G LD TP LE R LLLQ A LQG G GG ----- LEPGLA D RLL AQT QEA 635
Cdd:PRK06012 561 LA DY API TK DP D ELT EH VR QR LGR Q I V QQ YKGEDG E LP VI T LD PE LE Q LLLQ S LQG T GG gsyla LEPGLA E RLL QSL QEA 640
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 445989118 636 L S RQEM L G A PPVLLV NH ALRP L L S R F L R R S LPQL V VLS NL E LS DN RH IR MTA T I G G 691
Cdd:PRK06012 641 L E RQEM K G E PPVLLV SP ALRP Y L R R L L E R F LPQL P VLS YN E IP DN IE IR IVG T V G I 696
FlhA
COG1298 Flagellar biosynthesis protein FlhA [Cell motility];
22-690
0e+00
Flagellar biosynthesis protein FlhA [Cell motility];
Pssm-ID: 440909 [Multi-domain]
Cd Length: 676
Bit Score: 1069.28
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 22 LA G P ILILL IL S MM V LPLP A F I LDLL FT FNIALS IMV LLVA MFTQ R T L E F AA FPT I LL F TTL L RL A LNVASTR I IL M EGH 101
Cdd:COG1298 1 LA V P LGVIA IL A MM I LPLP P F L LDLL LA FNIALS LLI LLVA LYIK R P L D F SV FPT L LL I TTL F RL S LNVASTR L IL L EGH 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 102 T G AA AAGKV V EAFG H F L VGGN FAI G I VVF V ILVIINF M VITKGAGRIAEV G ARF V LD G MPGKQMAIDADLNAGLI G E D EA 181
Cdd:COG1298 81 E G TD AAGKV I EAFG E F V VGGN YVV G L VVF L ILVIINF V VITKGAGRIAEV A ARF T LD A MPGKQMAIDADLNAGLI D E E EA 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 182 KK RR S E VTQ EADFYG S MDGASKFVRGDAIAGILI MV IN VV GGL LV GVLQHGMS M G H AA ES YTLLTIGDGLV A QIPAL V IS 261
Cdd:COG1298 161 RR RR E E IQR EADFYG A MDGASKFVRGDAIAGILI TL IN II GGL II GVLQHGMS F G E AA QT YTLLTIGDGLV S QIPAL L IS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 262 TAAG V IVTR VSTDQ D V GEQ MVN QLF S NP SVMLLS A A VLGLLGL V PGMP N L V FLL FT A G L L GLA WWIRG R EQKAP AE PKPV 341
Cdd:COG1298 241 TAAG I IVTR AGSEG D L GEQ LSG QLF A NP KALYIA A G VLGLLGL I PGMP H L P FLL LA A L L G GLA YRLKK R QKEEE AE EAAA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 342 KMAEN -- NSVV E ATWN D VQLE D S L GM E V GY R LIP M VD FQ Q D G E LL G RI RS IR KKF AQE M GF LP P V V H IRDN MD L Q P AR YR 419
Cdd:COG1298 321 AAEAE aa AEPA E ESVD D LLPV D P L EL E L GY G LIP L VD ES Q G G D LL D RI KG IR RQL AQE L GF VV P P V R IRDN LQ L K P NE YR 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 420 I LM KGVE MGS G DAY P G R W LAINPG TAA G T LPG EA T VD PAFGL N A I WI ESALK E Q A QIQ GYTVV EA STV V ATHL NHL I SQ H 499
Cdd:COG1298 401 I KI KGVE VAR G ELR P D R L LAINPG GVT G E LPG IP T KE PAFGL P A V WI DPEQR E E A ELL GYTVV DP STV I ATHL SEV I KR H 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 500 AAEL F GRQE A QQLLDR VAQ E M PKL T E D LVP GVVT L TT L H KVLQNLL D E K V P IRD M RTILETLA EH AP IQS DP HE LT AV VR 579
Cdd:COG1298 481 AAEL L GRQE V QQLLDR LKK E Y PKL V E E LVP KLLS L GE L Q KVLQNLL R E R V S IRD L RTILETLA DY AP RTK DP DL LT EH VR 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 580 V ALGR A I T QQ WFPGKD E VH VI G LD TP LE R LLL QA LQ GGG ----- G L E PGLA D RLL AQTQ EA LSRQ E ML G A PPVLLV NHA L 654
Cdd:COG1298 561 Q ALGR Q I V QQ YAGPDG E LP VI T LD PE LE Q LLL ES LQ QTE qgsyl A L D PGLA Q RLL QSLA EA VEKL E AQ G E PPVLLV SPQ L 640
650 660 670
....*....|....*....|....*....|....*.
gi 445989118 655 RP L L S R F L R R S LP Q L V VLS NL E LSDNRH I RMTA T I G 690
Cdd:COG1298 641 RP Y L R R L L E R F LP D L P VLS YN E IPPDVE I ESVG T V G 676
FHIPEP
pfam00771 FHIPEP family;
31-680
0e+00
FHIPEP family;
Pssm-ID: 459933
Cd Length: 645
Bit Score: 971.09
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 31 IL S MM V LPLP A F I LDLL FT FNIALS IMV LLVA MFTQ R T L E F AA FPT I LL F TTL L RLALNVASTR I IL ME GH T gaa AAGKV 110
Cdd:pfam00771 1 IL A MM I LPLP P F L LDLL LA FNIALS LLI LLVA LYIK R P L D F SV FPT L LL I TTL F RLALNVASTR L IL LH GH E --- AAGKV 77
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 111 V EAFG H F L VGGN FAI G I VVF V ILVI IN F M VITKGA G R I AEV G ARF V LD G MPGKQMAIDADLNAGLI G E D EA KK RR S E VTQ 190
Cdd:pfam00771 78 I EAFG Q F V VGGN YVV G L VVF L ILVI VQ F I VITKGA E R V AEV A ARF T LD A MPGKQMAIDADLNAGLI D E E EA RR RR E E LQR 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 191 EADFYG S MDGASKFV R GDAIAGI L I MV IN VV GGL LV GVLQHGMS M G H AA ES YTLLTIGDGLV A QIPAL V ISTAAG V IVTR 270
Cdd:pfam00771 158 EADFYG A MDGASKFV K GDAIAGI I I TL IN II GGL II GVLQHGMS F G E AA QT YTLLTIGDGLV S QIPAL L ISTAAG I IVTR 237
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 271 V STDQDV GE QM V N QLF S NP SVMLLS A A VL G LLGL V PG M P N L V FLL FT A G L LG LA WWI R G R EQ KA P AE PKPVKM A ENNS V V 350
Cdd:pfam00771 238 V ASEGNL GE EI V G QLF A NP KALYIA A G VL L LLGL I PG L P T L P FLL LA A L L GF LA YRL R R R KK KA A AE EAEAEE A AAAA V L 317
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 351 EA twndvqle D S L GM E V GY R LIP M VD FQ Q D G E LL G RI RS IR KKF A Q E M GF LP P VVH IRDN MD L Q P AR YRI LM KGVE MGS G 430
Cdd:pfam00771 318 PV -------- D P L EL E L GY G LIP L VD ES Q G G D LL D RI KG IR RQL A L E L GF VV P PIR IRDN LQ L K P NE YRI KI KGVE VAR G 389
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 431 DAY P GRW LA I NPG TAA G TL PG EA T VD PAFGL N A I WI ESALK E Q A QIQ GYTVV EAS TV V ATHL NHL I SQ HAAEL F GRQE A Q 510
Cdd:pfam00771 390 ELL P DHL LA M NPG GVL G EI PG IP T KE PAFGL P A V WI DEEQR E E A ELA GYTVV DPP TV I ATHL TEV I KR HAAEL L GRQE V Q 469
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 511 Q LLD RVAQ E M PKL T E D LVP GVVT L TTLH KVLQNLL D E K V P IRD M RTILETLA EH AP IQS DP HE LT AV VR V ALGR A I T QQ W 590
Cdd:pfam00771 470 A LLD NLKK E Y PKL V E E LVP KLLS L GEIQ KVLQNLL R E R V S IRD L RTILETLA DY AP KTK DP DL LT EY VR Q ALGR Q I C QQ Y 549
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 591 FPGKDEVH VI G LD TP LE R LL LQA LQ GGG G ------ L E P G LA D RLL AQTQ EA LSRQ E ML G A PPVLL VNHAL R PL L S R F L R R 664
Cdd:pfam00771 550 AGEDGTLP VI T LD PE LE Q LL RES LQ QSE G qgsyla L D P D LA Q RLL EALS EA VEKL E QQ G E PPVLL TSPDI R RY L R R L L E R 629
650
....*....|....*.
gi 445989118 665 S LP Q L V VLS NL E LSDN 680
Cdd:pfam00771 630 F LP D L P VLS YN E IPPD 645
FlhA
TIGR01398 flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, ...
19-689
0e+00
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 273599 [Multi-domain]
Cd Length: 678
Bit Score: 964.42
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 19 WQI L AGP I LILL IL SM M V LPLPAF I LD L L FTF NIALS IMV LLV AM F T Q RT L E F AA FPT I LL FT TL L RL A LNVASTR I IL M 98
Cdd:TIGR01398 1 GRD L LLA I GVVA IL AV M I LPLPAF L LD I L LAL NIALS LLI LLV TL F I Q KP L D F SS FPT L LL IA TL F RL S LNVASTR L IL T 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 99 E GH T G AA AAGKV V EAFG H F L VGGN FA IG IV VF V IL V I I NF M VITKGA G RIAEV G ARF V LD G MPGKQMAIDADLNAGLI G E 178
Cdd:TIGR01398 81 H GH E G PN AAGKV I EAFG Q F V VGGN YV IG LI VF I IL I I V NF I VITKGA T RIAEV A ARF T LD A MPGKQMAIDADLNAGLI T E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 179 D EAKKRR S E VT QEADFYG S MDGASKFV R GDAIAGI L I MV IN VV GGL LV GV L QHGMS MGH AA ES YT L LTIGDGLVAQIPAL 258
Cdd:TIGR01398 161 E EAKKRR E E LE QEADFYG A MDGASKFV K GDAIAGI I I TL IN II GGL II GV V QHGMS LSD AA ST YT I LTIGDGLVAQIPAL 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 259 V ISTA A G V IVTR V S TDQDV G EQM V N QL FS NP SVM L LS AAVLGLL G LVPG M P NLV FL LFTAG L LG LAW WI R G R EQKAPAEP 338
Cdd:TIGR01398 241 I ISTA T G L IVTR A S SEGSF G KAI V T QL GA NP RAL L IV AAVLGLL A LVPG L P TFP FL FLAGA L AF LAW YL R R R SKQEEEAA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 339 K -- PVKMA E NNSVV E ATW ND VQLE D S L GM E V GY R LIP M VD FQ Q D G E LL G RIRSIRK KF AQE M GF LP PV VH IRDN MD L Q P A 416
Cdd:TIGR01398 321 A ea AKAQE E AAEEE E ESI ND ILAL D D L EL E L GY G LIP L VD DS Q G G D LL D RIRSIRK QL AQE Y GF VM PV IR IRDN LR L P P N 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 417 R YRI LM KGVE MGS G DAY PG RW LA I NPG T A A G TL PGE A T VD PAFGL N A I WI ESAL KE Q A QIQ GYTVV EAS TV V ATHL NHL I 496
Cdd:TIGR01398 401 E YRI KI KGVE VAR G ELR PG KY LA M NPG N A D G EI PGE E T RE PAFGL P A Y WI SEKN KE E A ERL GYTVV DPA TV L ATHL SEV I 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 497 SQH AAEL FG RQE A Q Q LLDR VAQ E M PKL T E D L V P GV V T L T T LH KVLQ N LL D E K V P IR DMR TILETLA EH API QS DP HE L TA 576
Cdd:TIGR01398 481 KNN AAEL LT RQE V Q N LLDR LKE E Y PKL V E E L I P DK V P L G T IQ KVLQ L LL R E R V S IR NLP TILETLA DY API TK DP DL L VE 560
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 577 V VR VA LGR A ITQQ WFPGKDEVH VI G LD TP LE RL L LQ AL QGG G ----- G LEP G L ADR L LAQTQE A LSRQEML G AP PVLL VN 651
Cdd:TIGR01398 561 H VR QR LGR Q ITQQ YLDEDGVLP VI T LD PD LE AA L AE AL KRD G egell D LEP A L LEE L VRAVRK A VEKLANN G ER PVLL TS 640
650 660 670
....*....|....*....|....*....|....*...
gi 445989118 652 HAL RP LLS R F L R R SL P Q L V VLS NL E LS DN RHIRMTATI 689
Cdd:TIGR01398 641 PRV RP YVR R I L E R FF P E L P VLS YN E IP DN VRVETVGVV 678
EscV
COG4789 Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and ...
22-689
0e+00
Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443818 [Multi-domain]
Cd Length: 688
Bit Score: 594.85
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 22 L AGPI L ILL I LS MM V LPLP AFIL D L L FTF NI AL S IMV L L VAM FTQRT L E F AA FP TI LL F TTL L RLAL NVAS TR I IL ME gh 101
Cdd:COG4789 11 L VLAA L LVA I IF MM I LPLP TYLV D I L IAL NI TI S VLL L M VAM YIPSP L A F ST FP SV LL I TTL F RLAL SIST TR L IL LQ -- 88
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 102 tga A A AG KVV E A FG H F L VGGN FAI G I V V F V I LVIIN F M VITKG AG R I AEV G ARF V LD G MPGKQM A IDADL N AG L I GE DEA 181
Cdd:COG4789 89 --- A D AG HII E T FG N F V VGGN LVV G L V I F L I ITVVQ F I VITKG SE R V AEV A ARF S LD A MPGKQM S IDADL R AG V I DA DEA 165
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 182 KK RR SEVTQ E ADF YG S MDGA S KFV R GDAIAGI L I MVI N VV GG LLV GVLQHGMS MGH A AES Y TL LTIGDGLVAQIPAL V IS 261
Cdd:COG4789 166 RR RR ALLEK E SQL YG A MDGA M KFV K GDAIAGI I I ILV N II GG IAI GVLQHGMS ASE A LHT Y SI LTIGDGLVAQIPAL L IS 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 262 TA AG V IVTRVS T D -- QDV G EQM V N QL FSN P SVM L LS A AV L G L LG L V PG M P N LVFLL FT A G L L GL AWWIRG R EQK A P A E -- 337
Cdd:COG4789 246 IT AG I IVTRVS G D ed SNL G REI V S QL LAQ P KAL L IA A VL L L L FA L I PG F P T LVFLL LA A L L G GL GFKLLR R KRR A A A A ae 325
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 338 -- P K P VKM A ENNSVV EA TWN D v QLEDS ---- L GMEVGYR L I P MVDFQQ dge L LGR IR SI R KKFAQEM G FLP P VV HIR D N M 411
Cdd:COG4789 326 se P L P ALQ A AGAKGS EA GLI D - GDDFP ptvp L ILRLSPS L A P ALEAEA --- L NQE IR RL R NRLFEDL G VPL P GI HIR F N P 401
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 412 D L QPAR Y R IL MKG V EMGS G DAY PG RW L AINPGT -- A A GTL P G E ATVD P AFGLNAI W IESALK E QAQIQ G YT V VE A ST V V A 489
Cdd:COG4789 402 G L PDDE Y S IL LNE V PVAR G TLP PG HL L VRDDVD el E A LGI P A E EGEL P LGEGPSL W VPAEHA E LLEKA G IK V RD A ED V L A 481
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 490 T HL NHLISQ HAAE LF G R QE AQQ LLD RVAQEM P klte D LV PG V VTLTT L HK --- VLQ N L LD E KVP IR DM R T ILE T L A E HA P 566
Cdd:COG4789 482 L HL SLVLRR HAAE FI G I QE TRY LLD QMEKKY P ---- E LV KE V QRVLP L QR iae VLQ R L VE E GIS IR NL R L ILE A L I E WG P 557
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 567 IQS D PHE LT AV VR V AL G R A I TQQWFP G KDEVHVIG LD TPL E RLLLQ A L - Q GGG G ---- L E P GLADRL L A Q TQE AL SRQEM 641
Cdd:COG4789 558 KEK D VVM LT EY VR I AL K R Y I CHRYSG G QGTLPALL LD PEI E EMIRG A I r Q TSA G sfla L D P EQSQAI L E Q LRQ AL GPLPP 637
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 445989118 642 L G AP PVLL VNHAL R PLLSRFLR R SL P Q L V VLS NL EL SDNRHIRMTAT I 689
Cdd:COG4789 638 G G QD PVLL TSMDI R RFVRKLIE R EF P D L P VLS YQ EL TPEIRVQPLGR I 685
hrcV
TIGR01399 type III secretion protein, HrcV family; Members of this family are closely homologous to the ...
27-689
3.44e-168
type III secretion protein, HrcV family; Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 273600 [Multi-domain]
Cd Length: 677
Bit Score: 498.03
E-value: 3.44e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 27 L I L L I L SMM V LPLP AFIL D L L FTF NI AL S IMV L LV A MFTQ R T L EFAA FP TI LL F TTL L RLAL NVAS TR I IL ME ghtga A A 106
Cdd:TIGR01399 10 L L L A I I SMM I LPLP TLLV D I L IAI NI TI S VLL L MI A IYIP R P L ALST FP SV LL I TTL F RLAL SIST TR L IL LH ----- A D 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 107 AG KVV EAFG H F L VGGN F A I G I V V F V I LV I IN F M VITKG AG R I AEV G ARF V LD G MPGKQM A IDADL N AG L I GE DEA KK RRS 186
Cdd:TIGR01399 85 AG NII EAFG Q F V VGGN L A V G L V I F L I IT I VQ F I VITKG SE R V AEV S ARF S LD A MPGKQM S IDADL R AG V I DA DEA RR RRS 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 187 EVTQ E ADF YG S MDGA S KFV R GDAIAGI L I MV IN VV GG LLV GV L QHGMS MGH A AES YT L LTIGDGLV A QIPAL V IS TA AG V 266
Cdd:TIGR01399 165 TLEK E SQL YG A MDGA M KFV K GDAIAGI I I VL IN II GG ISI GV T QHGMS ASE A LHL YT V LTIGDGLV S QIPAL L IS VT AG I 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 267 IVTRV STD -- QDV G EQMVN QL F S N P SVM LL S A AV L GLLG L V PG M P N LVF L L FTAG L LGLAWWIRG R EQKAPAEP K PVKMA 344
Cdd:TIGR01399 245 IVTRV PGE ae RNL G REIGH QL T S Q P RAL LL A A VL L LGFA L I PG F P L LVF A L LAVL L AAAGYLLSR R KRSRAKAN K AQASG 324
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 345 ENN S VVE A TWNDVQ L EDSLGME - VGY RL I P - MVDFQQDGE L LGR I RSI R KKFAQEM G FLP P VVH IR DNMD L QPARY RIL M 422
Cdd:TIGR01399 325 AVA S APG A AAPIKN L DPFAEAC p LIL RL S P d LQSSADKDT L DQE I ERM R WALFEDL G IPL P GII IR VGDS L PDNEF RIL L 404
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 423 KG V EMGSGDAY PG R w L A I N P G TAA --- GTL P GEATVDPAFGLNAI W IESALK E QA Q IQ G YTVVEA S T V VATH L NHLISQH 499
Cdd:TIGR01399 405 YE V PVLRDTIP PG H - V A L N D G VDN iev AGI P AISGKRWPGESQRV W VTEEGA E KL Q GA G LGYFSD S Q V ITHR L KATLLRN 483
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 500 A A E LF G R QE AQQ LLD RVAQ E M P K L TED l V PG V VT L TTLHK VLQ N L LD E K V P IR DM R T ILETL A E H A PIQS D PHE LT AV VR 579
Cdd:TIGR01399 484 A Q E FI G I QE TRY LLD QMER E Y P E L VKE - V QR V LP L QRIAE VLQ R L VS E Q V S IR NL R L ILETL I E W A QREK D VVM LT EY VR 562
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 580 V AL G R A I TQQWFP G KDEVHVIGL D TPL E R L LLQ A L - Q GGG G ---- L E P GLADR LL A Q TQE A LSRQEMLGAP PVLL VNHAL 654
Cdd:TIGR01399 563 I AL K R Y I CHRYAN G GRQLSAVLI D PEI E E L IRG A I r Q TST G tyla L D P DDSEQ LL D Q IRQ A VGDLPRAPSQ PVLL TSMDI 642
650 660 670
....*....|....*....|....*....|....*
gi 445989118 655 R PLLSRFLRRSL P Q L V VLS NL EL SDNRHIRMTAT I 689
Cdd:TIGR01399 643 R RYVRKMIESEF P D L P VLS YQ EL GEEIEVQVLGR I 677
flhA
PRK12792 flagellar biosynthesis protein FlhA; Reviewed
28-689
1.93e-150
flagellar biosynthesis protein FlhA; Reviewed
Pssm-ID: 237205
Cd Length: 694
Bit Score: 453.03
E-value: 1.93e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 28 I LL IL SMMV LP L PA FIL D LLFT F N IALS IMV L L VA MFT QR T LEF A AFPT I LL FT TLLRLALN V A S TR I IL ME G HT G AA AA 107
Cdd:PRK12792 24 I VA IL AVLF LP V PA VLI D IGLA F S IALS VLI L M VA LWI QR P LEF S AFPT V LL IA TLLRLALN I A T TR L IL SN G QE G VD AA 103
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 108 G K V VEA F GH F LVG G N F A IG I VVF V IL VII NF M VITKGA G RIAEVGARF V LD GM PGKQMAIDADL N AGLI GED EA KK RR S E 187
Cdd:PRK12792 104 G H V IAG F SQ F VMS G D F V IG L VVF A IL ITV NF L VITKGA T RIAEVGARF T LD AI PGKQMAIDADL S AGLI DDK EA QR RR R E 183
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 188 VTQ E AD F Y GSMDGASKFVRGDAIA GIL I MVI N VV GG LLV GV LQ HGM SM G H AA ESY T L L TI GDGLV A QIPAL VI S T AAG VI 267
Cdd:PRK12792 184 LEE E SA F F GSMDGASKFVRGDAIA SLI I IAV N IF GG III GV TR HGM PL G Q AA DVF T K L SV GDGLV S QIPAL IV S L AAG LL 263
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 268 V ---- TR V S TD Q D V geqm VN QL FSN P SVMLLS A AVLGL L GL VPG M P N L V F L L FTAGLLGL A WW I RG R EQKAP A EPKPVKM 343
Cdd:PRK12792 264 V skgg TR G S AE Q A V ---- LG QL GAY P RALSVA A LLMFV L AI VPG L P F L P F A L LGGVMAFV A YT I PR R RAARA A AEAAKVK 339
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 344 A E NN S VVEATWND V ------- QL E DS LG MEVGYR L IP mvdfq QDG EL LG R IRSI R K KFA QEM GF LP P VVHIR D NMD L Q P A 416
Cdd:PRK12792 340 R E EE S AQAEAKDS V keqlrta EI E LC LG KQLAAQ L QG ----- AHA EL AH R VAKM R R KFA KQY GF VV P EIKLT D SLS L P P K 414
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 417 R Y R I LMK G VEMGSGDAY PG RW L AINPGTAAGTL PGE ATVD PAFG LN A I W IES A LKEQAQIQ G YTV V EAST V VA THL NHL I 496
Cdd:PRK12792 415 T Y Q I KIH G TVVATQELR PG EL L VVVGDGPRPDV PGE EVRE PAFG MK A L W VPD A FANEVRRD G FEP V DNAS V LL THL SEV I 494
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 497 SQHAAE L FGRQEAQQ LLDR VAQ E MPK L TE D LV P GVVTLTT L HK VL QN LL D E K V P IR DMRT ILE TL AE H AP IQSDPHELTA 576
Cdd:PRK12792 495 RNNLPQ L LSYKDMRA LLDR LDP E YKR L ID D IC P SQISYSG L QA VL KL LL A E R V S IR NLHL ILE AV AE I AP HARRAEQIAE 574
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 577 V VR VALGRA I TQQ w FPGKDEVH V IG L DTPLERLLL Q A L QGGG ------- GLE P G L ADRLLAQTQ EA LSRQEML G APP VL L 649
Cdd:PRK12792 575 H VR MRIAQQ I CGD - LSDNGVLK V LR L GNRWDLAFH Q S L KRDA kgevvef DID P R L VEQFGTEAS EA IRERMDQ G HQF VL V 653
650 660 670 680
....*....|....*....|....*....|....*....|
gi 445989118 650 VNHAL RP LLSRFLR R SL P Q L V VLS N LE LSDNRH I RMTA TI 689
Cdd:PRK12792 654 TAPEA RP YVRMIIE R LF P T L P VLS H LE IARGVE I KSLG TI 693
PRK15337
PRK15337 EscV/YscV/HrcV family type III secretion system export apparatus protein;
27-689
2.83e-142
EscV/YscV/HrcV family type III secretion system export apparatus protein;
Pssm-ID: 237946 [Multi-domain]
Cd Length: 686
Bit Score: 431.72
E-value: 2.83e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 27 L ILL I LS M MVL PLP AFIL D L L FTF NI A L S I M V LLVAMFTQ R T L E F AA FP T ILL F TTL L RLAL NVAST R I IL MEGH tgaaa 106
Cdd:PRK15337 20 L MVM I IA M LII PLP TYLV D F L IGL NI V L A I L V FMGSFYID R I L S F ST FP S ILL I TTL F RLAL SISTS R L IL LDAD ----- 94
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 107 AG KVVEA FG H F LV G GNFAI G I V V F V I LVIIN F M VITKG AG R I AEV G ARF V LDGMPGKQM A IDADL N AG L I GE D EA K K RRS 186
Cdd:PRK15337 95 AG EIITT FG Q F VI G DSLVV G F V I F S I VTVVQ F I VITKG SE R V AEV A ARF S LDGMPGKQM S IDADL K AG I I DA D GV K E RRS 174
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 187 EVTQ E ADF YGS M DGA S KF VR GDAIAGI L I MVI N VV GG LL VG VL QHGM SMGH A AES YT L LTIGDGLVAQIPAL V IS TA AG V 266
Cdd:PRK15337 175 VLER E SQL YGS F DGA M KF IK GDAIAGI I I IFV N LI GG IS VG MT QHGM DLSS A LST YT I LTIGDGLVAQIPAL L IS IS AG F 254
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 267 IVTRV ST D Q D - V G EQMVN QL F SNP S V MLLS A AVLGLL GL V PG M P NL VFLL FTAG L LG L AWWIRG R EQ K AP A EP kpvkma E 345
Cdd:PRK15337 255 IVTRV NG D S D n L G RNIMS QL L SNP F V LVVT A ILALSI GL L PG F P LP VFLL LAVV L GV L FYFKKF R KK K KS A AE ------ P 328
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 346 NN S VV EA TWN - D VQLED SLG MEVGYRLI ----- P MV ----- DFQQ D G E LLGRIRSI R KK F AQEM G FLP P VVHI R DNMD L Q 414
Cdd:PRK15337 329 DT S GG EA PLD i D EKAGS SLG LIGDLDKV ipetv P LI llvpe ARRP D L E KENLAERL R SQ F FIDY G VRL P DILL R YSEG L D 408
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 415 PARYRI L MKGVEMGSGDA Y PGRWLAI N PGTAAGT L PGEA T VDPAF G LNAI W IESALK E QAQIQ GY TVVE A STVVATH L NH 494
Cdd:PRK15337 409 DNSIVV L INEIRAAQFTI Y FDLHRVV N YSDELVS L GINP T IIDSG G EQYY W VPHEDT E KLAKL GY VLRS A IDELYHC L SV 488
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 495 L ISQHAA E L FG R QE AQQ LLD RVAQEM P K L TED l V PGVV T LTTLHK VLQ N LL D E KVP IR D M RT I L E T LA EH AP IQS D PHE L 574
Cdd:PRK15337 489 L LLHNIN E F FG I QE TKH LLD QLEKKY P D L LKE - V YRHA T VQRISE VLQ R LL S E RIS IR N M KL I M E A LA LW AP REK D VIM L 567
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 575 TAV VR V AL G R A I TQQ w F PGKD E VHVIG L DTPL E RLLLQAL - Q GG GG ---- L E P GLADR L LAQTQE AL SRQEMLGAPP VLL 649
Cdd:PRK15337 568 VEH VR G AL A R Y I CHK - F AAGG E LRAVV L SAEV E DAIRKGI r Q TS GG tfln L D P AESEN L MDLLTL AL DDLGIAHRDI VLL 646
650 660 670 680
....*....|....*....|....*....|....*....|
gi 445989118 650 V NHAL R PLLSRFLRRSL P Q L V VLS NL E LS D NRHIRMTA TI 689
Cdd:PRK15337 647 V SVDI R RFVKKLIEGRF P E L E VLS FG E IA D SVEVNVIK TI 686
PRK12720
PRK12720 EscV/YscV/HrcV family type III secretion system export apparatus protein;
21-689
3.36e-136
EscV/YscV/HrcV family type III secretion system export apparatus protein;
Pssm-ID: 183699 [Multi-domain]
Cd Length: 675
Bit Score: 415.66
E-value: 3.36e-136
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 21 I LA gp ILI L LILS MM V LPLP AFIL D L L FTF N IAL S IMV L LV A MFTQRT LEF AA FP TI LL F TTL L RLAL NVAST R II L ME g 100
Cdd:PRK12720 18 V LA -- VML L VAVF MM I LPLP TWMV D I L IAI N LMF S VIL L MI A IYLRDP LEF SV FP SL LL I TTL Y RLAL TISTS R LV L LQ - 94
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 101 htga AA AG KV V E AFG H F L VGGN F A I G IV VF V I LV I IN F M VITKG AG R I AEV G ARF V LDGMPGKQM A ID A D LN AG L I GE DE 180
Cdd:PRK12720 95 ---- HD AG EI V D AFG K F V VGGN L A V G LI VF T I IT I VQ F I VITKG SE R V AEV S ARF S LDGMPGKQM S ID G D MR AG V I DA DE 170
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 181 A KKR R SE V TQ E ADFY G S MDGA S KFV R GDAIAGI LIMVI N VV GG LLV GV L QH G MS MGH A AES Y TL L T IGDGL VA QIP A L V I 260
Cdd:PRK12720 171 A RRL R QH V QK E SRLL G A MDGA M KFV K GDAIAGI IVILV N II GG III GV M QH D MS ASE A VNT Y AV L S IGDGL CG QIP S L L I 250
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 261 S TA AG V IVTRV -- STD Q DVGEQMVN Q LFSN P SVML L S A A VL G L LG L V PG M P NLV F LLFT A GLLGL A WWI R GREQKAP A ep 338
Cdd:PRK12720 251 S IT AG I IVTRV pg EKR Q NLANELSS Q IGRQ P QALW L A A V VL M L FA L I PG F P FIT F AFLA A LVAAP A ILL R RKKSVVS A -- 328
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 339 kpvk MAENNSVV E ATWNDVQLEDS l GMEVGY RL I P MV dfq QDGE L LGR I RSI R KKFAQEM G FLP P V V H I RDNMD L QPARY 418
Cdd:PRK12720 329 ---- NGVEAGGS E EGPEGDSMVPG - ACPLML RL A P TL --- HSAD L IRD I DAL R WFLFEDL G VPL P E V N I EVDPE L TEKTL 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 419 RI L MKGVEMG S GDAY P GRW L AINPGT A ag T L P G EATVD P AFGLNAI W IESALK EQAQ IQ G YT V VEA S TVVATH L NHLISQ 498
Cdd:PRK12720 401 TV L LYQEPVL S LSLP P QAL L LLIGPD A -- S L V G DSQTL P NGMGQIC W LTKDQA EQAQ GF G LD V FAG S QRISAL L KCVLLR 478
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 499 HAA E LF G R QE AQQ L L D RVAQEMPK L TED L v PGVVTLTTLHKV LQ N L LD E K V P IRD M RTI LE TL A E H AP IQS D PHE LT AV V 578
Cdd:PRK12720 479 YMG E FI G V QE TRY L M D AMEKRYGE L VKE L - QRQLPVGKIAEI LQ R L VS E R V S IRD L RTI FG TL V E W AP REK D VVM LT EY V 557
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 579 R V AL G R A I TQQWFPGKDEVH V IGLDTPL E R L LLQAL - Q GGG G ---- L EPGLADRL L AQTQE AL SRQEM L gapp VL LVNHA 653
Cdd:PRK12720 558 R I AL R R H I LRRFNHEGKWLP V LRIGEGI E N L IRESI r Q TSA G tysa L SSRHSTQI L QLIEQ AL KQSQK L ---- VL VTSVD 633
650 660 670
....*....|....*....|....*....|....*.
gi 445989118 654 L R PL L SRFLR R S L PQ L V VLS NL EL S D NRH I RMTAT I 689
Cdd:PRK12720 634 V R RF L RKIIE R T L FD L P VLS WQ EL G D EAE I KVVGS I 669
PRK05910
PRK05910 type III secretion system protein; Validated
13-677
5.53e-54
type III secretion system protein; Validated
Pssm-ID: 168293
Cd Length: 584
Bit Score: 195.01
E-value: 5.53e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 13 N LKSTQ W QIL A G P IL IL LI L smm VL PLP AFI LD LLFTF N I ALS IMVLLVAMFTQRTLEFAA FP TIL L FTT LLRL A LN V AS 92
Cdd:PRK05910 4 N KRGSS W KMV A I P LC IL FT L --- IF PLP QWL LD FGLCI N F ALS LSIVFWVFSLRSSASARL FP SLF L YLC LLRL G LN L AS 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 93 TR I IL ME G htgaa A A GKVVEAF G H F LVG G NFAIGIVVFVI L VII NF M VITKG AG RIAEV G ARF V L DGM PGKQM AI DADL N 172
Cdd:PRK05910 81 TR W IL SS G ----- W A SPLIFSL G N F FSL G SLPAALTACLL L FLV NF L VITKG SE RIAEV R ARF S L EAL PGKQM SL DADL V 155
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 173 A G LIGEDEAK K RRSEVTQ E A DF YGS M D G ASK FV R GDAI AGILIMVI N VVGGLLV gvlqh G MSM G H A AESYT L LTI GD G LV 252
Cdd:PRK05910 156 S G RASYSRVS K QKNSLLE E S DF FSA M E G VFR FV K GDAI MSCILLGV N ILAATFL ----- G RAT G Y A VGDLW L TVL GD A LV 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 253 A Q I PAL VI S T AA GVIVTR V STDQDVGEQMVNQLFSNPSVMLLS A AV L GL L GLV PG M P NLVF L L F TAG L L g LA W wirgreq 332
Cdd:PRK05910 231 S Q V PAL LT S C AA ATLISK V GEKESLLQHLLDYYEQSRQHFRFI A LL L CS L ACI PG A P KAPI L G F SVL L F - LA Y ------- 302
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 333 kapaep K PVKMA E NNSVVEATWN dv QL E DS L GM E vgyrlipmvdfq QD G ELLGRI R SI R KKFA QE M G - FL P PVVHI R dn M 411
Cdd:PRK05910 303 ------ K NPSSG E TLLFQKERFE -- FV E LA L PD E ------------ GV G NPANLY R AA R EEIF QE L G v VF P EEIVV R -- H 360
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 412 DLQPA R YR ilmkgvem G SG D aypgrwlainpgtaagtlpgeatvdpafglnaiwi E SA L K E qaqiqgytvveast VVATH 491
Cdd:PRK05910 361 VESSP R LI -------- F SG Q ----------------------------------- E VY L R E -------------- LSCPA 383
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 492 LNHLISQH A A E LFGRQEAQQ L LDRVAQEMPKLT E DLV P GVVTLTT L HKV L QN L LD E K V PIRDMRT ILE TL A EHAPIQSDP 571
Cdd:PRK05910 384 ILPSLRNL A P E AISERFVKR L VEEFQEVAGISI E EII P KKISENS L VFL L RA L VR E R V SLHLFPK ILE AI A VYGSQGKSS 463
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445989118 572 H EL TAV VR VA LG RA I TQQWFPGK D EVH VI GL D TPL E RLL -- LQA lqggg GLE P GLADRLL AQ TQEA L S R q EML G APPVLL 649
Cdd:PRK05910 464 E EL VEK VR KY LG KQ I GRSLWNRQ D TLE VI TI D SHV E QFI rd SYS ----- KSN P DMNEKVV AQ VKSL L E R - SGE G NFRAIV 537
650 660
....*....|....*....|....*...
gi 445989118 650 VNHAL R PL L SRFLRRSL P Q L V VLS NL EL 677
Cdd:PRK05910 538 TGCET R FE L KKMVDPYF P D L L VLS HS EL 565
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
