|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13721 |
PRK13721 |
conjugal transfer ATP-binding protein TraC; Provisional |
32-875 |
0e+00 |
|
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain] Cd Length: 844 Bit Score: 1731.12 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 32 VLGEMSFPQFSRLLPYRDYNQESGLFMNDTTMGFMLEAIPINGANESIVEALDHMLRTKLPRGIPLCIHLMSSQLVGDRI 111
Cdd:PRK13721 1 VLGEMSFPQFSRLLPYRDYDQESGLFMNDTTMGFMLEAIPLNGANESIVEALDHMLRTKLPRGIPLCIHLMSSKLVGDRI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 112 EYGLREFSWSGEQAERFNAITRAYYMKAAATQFPLPEGMNLPLTLRHYRVFISYCSPSKKKSRADILEMENLVKIIRASL 191
Cdd:PRK13721 81 EYGLREFSWSGEQAERFNAITRAYYMRAALTQFPLPEGMNLPLTLRHYRVFISYCSPSKKKSRADILEMENLVKIIRASL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 192 QGASITTQTVDAQAFIDIVGEMINHNPDSLYPKRRQLDPYSDLNYQCVEDSFDLKVRADYLTLGLRENGRNSTARILNFH 271
Cdd:PRK13721 161 QGASITTQTVDAQAFISIVREMINHRPDSLYPKRRQLDPYSDLNYQCVEDSFDLKVRADYLTLGLRENGRNSTARILNFH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 272 LARNPEIAFLWNMADNYSNLLNPELSISCPFILTLTLVVEDQVKTHSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGE 351
Cdd:PRK13721 241 LAKNPEIAFLWQMADNYSNLLNPELSISCPFILTLTLEVEDQVKTQSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 352 LRQRLGSGQSSVVSYFLNITAFCKDNNETALEVEQDILNSFRKNGFELISPRFNHMRNFLTCLPFMAGKGLFKQLKEAGV 431
Cdd:PRK13721 321 LRQRLGSNQSSLVSYFLNITAFCPDNNETALEVEQDILNSFRKNGFELISPRFNHMRNFLTCLPFMAGEGLFKDLKEAGV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 432 VQRAESFNVANLMPLVADNPLTPAGLLAPTYRNQLAFIDIFFRGMNNTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFA 511
Cdd:PRK13721 401 VQRAESFNVANLMPLVADNPLTPAGLLAPTYRNQLAFIDIFFRGMNNTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 512 VVFDMGDGYKSLCENMGGVYLDGETLRFNPFANITDIDQSAERVRDQLSVMASPNGNLDEVHEGLLLQAVRASWLAKENR 591
Cdd:PRK13721 481 VVFDMGDGYKSLCENMGGVYLDGETLRFNPFANITDIDQSAERIRDQLSVMASPNGNLDEVHEGLLLQAVRASWLAKKNR 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 592 ARIDDVVDFLKNASDSEQYAESPTIRSRLDEMIVLLDQYTANGTYGQYFNSDEPSLRDDAKMVVLELGGLEDRPSLLVAV 671
Cdd:PRK13721 561 ARIDDVVDFLKNARDSEQYADSPTIRSRLDEMIVLLDQYTANGTYGEYFNSDEPSLRDDARMVVLELGGLEDRPSLLVAV 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 672 MFSLIIYIENRMYRTPRNLKKLNVIDEGWRLLDFKNHKVGEFIEKGYRTARRHTGAYITITQNIVDFDSDKASSAARAAW 751
Cdd:PRK13721 641 MFSLIIYIENRMYRTPRNLKKLNVIDEGWRLLDFKNHKVGEFIEKGYRTARRHTGAYITITQNIVDFDSDKASSAARAAW 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 752 GNSSYKIILKQSAKEFAKYNQLYPDQFLPLQRDMIGKFGAAKDQWFSSFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFE 831
Cdd:PRK13721 721 GNSSYKIILKQSAKEFAKYNQLYPDQFSPLERDMIGGFGAAKDQWFSSFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFE 800
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 445991900 832 FVQQKRKEGLSIHEAVWQLAWKKSGPEMASLEAWLEEHEKYRSV 875
Cdd:PRK13721 801 FVQQKRKEGLSIHEAVWQLAWKKFGPEMASLEAWLEEHEKYRSV 844
|
|
| TraC-F-type |
TIGR02746 |
type-IV secretion system protein TraC; The protein family described here is common among the F, ... |
44-854 |
0e+00 |
|
type-IV secretion system protein TraC; The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Pssm-ID: 274279 [Multi-domain] Cd Length: 797 Bit Score: 1009.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 44 LLPYRDYNQESGLFMNDTTMGFMLEAIPINGANESIVEALDHMLRTKLPRGIPLCIHLMSSQLVGDRIEYGLREFSWSGE 123
Cdd:TIGR02746 1 WLPYRAYDEESGIFMNRHSMGFGLELTPLSGADESLVESLSSLLRTDLPEGTDIQVLLWGSPQIGPFLDRNEEQFSQNGG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 124 QAERFNAITRAYYMKAAATQFplpeGMNLPLTLRHYRVFISYCSPSKKKSRADILEMENLVKIIRASLQGASITTQTVDA 203
Cdd:TIGR02746 81 ILEKLARNRVKYYLNAAQKGF----FKNSGVTLRDFRLFLSVSIPFKSPNEDVIQELRSLRERIESTLRSAGFGCRRVDA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 204 QAFIDIVGEMINHNPDSLYPKRRQLDPYSDLNYQCVEDSFDLKVRADYLTLGLRENGRNSTARILNFHLARNPEIAFLWN 283
Cdd:TIGR02746 157 EDLLSLVREMLNPDPDSIHPWPISYDPNQLLRDQIVDPDTDLEVHEGGLEVDHEDNQGEVKTRIRVFSIKRFPEEFTLWQ 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 284 MADNYSNLLNPELSISCPFILTLTLVVEDQVKTHSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGELRQRLGSGQSSV 363
Cdd:TIGR02746 237 TGNLIGDLLNPSLQITCPFLLSFTVRVEDQVKKKAKATAKAKDLNKQAKSSMAKWVPSLEKKLKEIKYLREAIASGGDSL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 364 VSYFLNITAFCkdNNETALEVEQDILNSFRKNGFELISPRFNHMRNFLTCLPFMAGKGLFKQLKEAGVVQRAESFNVANL 443
Cdd:TIGR02746 317 VSMYYNVLLFT--NPDNLRRDVEAAKSSFRKNGFDLAEDKRIQLQAFLAALPFNPTEGLFEDLKKAGRVRTLSSANAVNL 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 444 MPLVADNPLTP-AGLLAPTYRNQLAFIDIFFRGMnnTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYKS 522
Cdd:TIGR02746 395 LPLIADWKGTKgSGLLLPTRRGQLSAFDPFDSDS--TNYNIAVVGGSGAGKSFFMQELIVDNLSRGGKVWVIDVGRSYKK 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 523 LCENMGGVYLDGE---TLRFNPFA--NITDIDQSAERVRDQLSVMASPNGNLDEVHEGLLLQAVRASWLAKENRARIDDV 597
Cdd:TIGR02746 473 LCEMLGGTYIEFSpesNICLNPFTgnNVTEIDDEIDQITALIALMASPEGGLSDEQRSTLEEAILAAWKEYGNEATITDV 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 598 VDFLKNASDSEQYaesptirSRLDEMIVLLDQYTANGTYGQYFNSdEPSLRDDAKMVVLELGGLEDRPSLLVAVMFSLII 677
Cdd:TIGR02746 553 QDALQQLEDDEND-------PRIKDLGKMLNPYTSHGVYGRYFNG-PNNLDFSNRFVVLELEELEDRPDLQAVVLFSLMV 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 678 YIENRMYRTPRNLKKLNVIDEGWRLLDFKNHKVGEFIEKGYRTARRHTGAYITITQNIVDFDSdkaSSAARAAWGNSSYK 757
Cdd:TIGR02746 625 RITGEMYLTPRKRRKICIIDEAWSLLDGANPQAADFIETGYRRARKYGGAFITITQGIEDFYS---SPEARAAYANSDWK 701
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 758 IILKQSAKEFAKYNQLYPDQFLPLQRDMIGKFGAAKDQwFSSFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFEFVQQKR 837
Cdd:TIGR02746 702 IILRQSAESIAKLKAENPFTFSPFEKRLIKSLRTAKGA-FSELLIRSGEGSSVHRLFVDPFSRVLFSTDGPEFEEVEELR 780
|
810
....*....|....*..
gi 445991900 838 KEGLSIHEAVWQLAWKK 854
Cdd:TIGR02746 781 EQGLSLEEAIEQLAQKH 797
|
|
| VirB4 |
COG3451 |
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ... |
288-840 |
4.32e-115 |
|
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain] Cd Length: 546 Bit Score: 361.96 E-value: 4.32e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 288 YSNLLNPELSISCPFILTLTLVVEDQVKTHSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGELRQRLGSGQSSVVSYF 367
Cdd:COG3451 23 SPGLLDPLLQLPCEFIVTQSFTPLDKDEALKKLKRKRRRLESKRKSEQALVDDDAESQAEDAEEALDELQSGGERLGEVH 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 368 LNITAFCKDNNEtALEVEQDILNSFRKNGFELISPRFNHMRNFLTCLPFMAGKGLFKQLkeagvvqrAESFNVANLMPLV 447
Cdd:COG3451 103 LTLTVFADDLEE-LEEAVREVESALQSAGFTLVRETLNQEEAFLSSLPGNFDYRLRRRL--------LTTSNLAALFPFH 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 448 ADNPLTPAGL-LAPTYRNQLAFIDIFFRgmnNTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYKSLCEN 526
Cdd:COG3451 174 SFELGDPWGIyLLNTRSGTPVFFDFHDG---LDNGNTLILGPSGSGKSFLLKLLLLQLLRYGARIVIFDPGGSYEILVRA 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 527 MGGVYLD---GETLRFNPFAnITDIDQSAERVRDQLSVMASPNG-NLDEVHEGLLLQAVRASW--LAKENRARIDDVVDF 600
Cdd:COG3451 251 LGGTYIDlspGSPTGLNPFD-LEDTEEKRDFLLELLELLLGREGePLTPEERAAIDRAVRALYrrADPEERTTLSDLYEL 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 601 LKNASDSEQYAESptirsrldemivlLDQYTANGTYGQYFNSDEPSLRDDAKMVVLELGGLEDRPSLLVAVMFSLIIYIE 680
Cdd:COG3451 330 LKEQPEAKDLAAR-------------LEPYTKGGSYGWLFDGPTNLDLSDARFVVFDLTELLDNPELRPPVLLYLLHRIW 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 681 NRMYRTPRNLKKLNVIDEGWRLLDfkNHKVGEFIEKGYRTARRHTGAYITITQNIVDFDSdkaSSAARAAWGNSSYKIIL 760
Cdd:COG3451 397 NRLRKNNDGRPTLIVIDEAWLLLD--NPAFAEFLEEWLKTLRKYNGAVIFATQSVEDFLS---SPIAEAIIENSATKILL 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 761 KQSAKEFAKYNQLYpdQFLPLQRDMIGKFGAAKDQwfssFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFEFVQQKRKEG 840
Cdd:COG3451 472 PQPKADIEDYAELL--GLSERELELIRSAGRGKRD----FLIKQGNGSVVFRLDLSPEELALLSTKPEEVAILDELRAEH 545
|
|
| TraC_F_IV |
pfam11130 |
TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a ... |
39-277 |
1.47e-60 |
|
TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a cytoplasmic, peripheral membrane protein and is one of the proteins encoded by the F transfer region of the conjugative plasmid that is required for the assembly of F pilin into the mature F pilus structure. F pili are filamentous appendages that help establish the physical contact between donor and recipient cells involved in the conjugation process.
Pssm-ID: 431669 [Multi-domain] Cd Length: 232 Bit Score: 205.21 E-value: 1.47e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 39 PQFSRLLPYRDYNQESGLFMN-DTTMGFMLEAIPINGANESIVEALDHMLRTKLPRGIPLCIHLMSSQLVGDRIEYgLRE 117
Cdd:pfam11130 1 PSFSDLLPYVAYDPETGLFLNeDGSVGFVFELSPLGGADESVRDTLESLLSDDLPDGTPVQFLLFASPDIGPYLDR-LRD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 118 FSwSGEQAERFNAIT--RAYYMKAAATQFPlpeGMNLPLTLRHYRVFISYCSPSKKKSRADILEMENLVKIIRASLQGAS 195
Cdd:pfam11130 80 YR-LGEQGGHLRAIArpRGLFLDSGVTGSL---SADWRGQLRRFRLVLSRKVPGKADLPTPIEALNELRDRLEASLRSAG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 196 ITTQTVDAQAFIDIVGEMINHNPDSLYPKRRQLDPYSDLNYQCVEDSFDLKVRADYLTLGLRENgrnstARILNFHLARN 275
Cdd:pfam11130 156 LAARRLDPDDLIAWLRRWLNPDPSASWDPPADYDPDKDIAEQILDSDPRLDVEAGRLYFDGEPH-----RAVRVLSLRRF 230
|
..
gi 445991900 276 PE 277
Cdd:pfam11130 231 PE 232
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
668-760 |
6.80e-05 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 43.75 E-value: 6.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 668 LVAVMFSLIIYIENRMYRTP---RNLKKLNVIDEgwrlldFKNHKVGEFIEKGYRTARRHTGAYITITQNIVDFDSDKAS 744
Cdd:cd01127 53 LRALFFNQLFRALTELASLSpgrLPRRVWFILDE------FANLGRIPNLPNLLATGRKRGISVVLILQSLAQLEAVYGK 126
|
90
....*....|....*.
gi 445991900 745 SAARAAWGNSSYKIIL 760
Cdd:cd01127 127 DGAQTILGNCNTKLYL 142
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13721 |
PRK13721 |
conjugal transfer ATP-binding protein TraC; Provisional |
32-875 |
0e+00 |
|
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain] Cd Length: 844 Bit Score: 1731.12 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 32 VLGEMSFPQFSRLLPYRDYNQESGLFMNDTTMGFMLEAIPINGANESIVEALDHMLRTKLPRGIPLCIHLMSSQLVGDRI 111
Cdd:PRK13721 1 VLGEMSFPQFSRLLPYRDYDQESGLFMNDTTMGFMLEAIPLNGANESIVEALDHMLRTKLPRGIPLCIHLMSSKLVGDRI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 112 EYGLREFSWSGEQAERFNAITRAYYMKAAATQFPLPEGMNLPLTLRHYRVFISYCSPSKKKSRADILEMENLVKIIRASL 191
Cdd:PRK13721 81 EYGLREFSWSGEQAERFNAITRAYYMRAALTQFPLPEGMNLPLTLRHYRVFISYCSPSKKKSRADILEMENLVKIIRASL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 192 QGASITTQTVDAQAFIDIVGEMINHNPDSLYPKRRQLDPYSDLNYQCVEDSFDLKVRADYLTLGLRENGRNSTARILNFH 271
Cdd:PRK13721 161 QGASITTQTVDAQAFISIVREMINHRPDSLYPKRRQLDPYSDLNYQCVEDSFDLKVRADYLTLGLRENGRNSTARILNFH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 272 LARNPEIAFLWNMADNYSNLLNPELSISCPFILTLTLVVEDQVKTHSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGE 351
Cdd:PRK13721 241 LAKNPEIAFLWQMADNYSNLLNPELSISCPFILTLTLEVEDQVKTQSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 352 LRQRLGSGQSSVVSYFLNITAFCKDNNETALEVEQDILNSFRKNGFELISPRFNHMRNFLTCLPFMAGKGLFKQLKEAGV 431
Cdd:PRK13721 321 LRQRLGSNQSSLVSYFLNITAFCPDNNETALEVEQDILNSFRKNGFELISPRFNHMRNFLTCLPFMAGEGLFKDLKEAGV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 432 VQRAESFNVANLMPLVADNPLTPAGLLAPTYRNQLAFIDIFFRGMNNTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFA 511
Cdd:PRK13721 401 VQRAESFNVANLMPLVADNPLTPAGLLAPTYRNQLAFIDIFFRGMNNTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 512 VVFDMGDGYKSLCENMGGVYLDGETLRFNPFANITDIDQSAERVRDQLSVMASPNGNLDEVHEGLLLQAVRASWLAKENR 591
Cdd:PRK13721 481 VVFDMGDGYKSLCENMGGVYLDGETLRFNPFANITDIDQSAERIRDQLSVMASPNGNLDEVHEGLLLQAVRASWLAKKNR 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 592 ARIDDVVDFLKNASDSEQYAESPTIRSRLDEMIVLLDQYTANGTYGQYFNSDEPSLRDDAKMVVLELGGLEDRPSLLVAV 671
Cdd:PRK13721 561 ARIDDVVDFLKNARDSEQYADSPTIRSRLDEMIVLLDQYTANGTYGEYFNSDEPSLRDDARMVVLELGGLEDRPSLLVAV 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 672 MFSLIIYIENRMYRTPRNLKKLNVIDEGWRLLDFKNHKVGEFIEKGYRTARRHTGAYITITQNIVDFDSDKASSAARAAW 751
Cdd:PRK13721 641 MFSLIIYIENRMYRTPRNLKKLNVIDEGWRLLDFKNHKVGEFIEKGYRTARRHTGAYITITQNIVDFDSDKASSAARAAW 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 752 GNSSYKIILKQSAKEFAKYNQLYPDQFLPLQRDMIGKFGAAKDQWFSSFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFE 831
Cdd:PRK13721 721 GNSSYKIILKQSAKEFAKYNQLYPDQFSPLERDMIGGFGAAKDQWFSSFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFE 800
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 445991900 832 FVQQKRKEGLSIHEAVWQLAWKKSGPEMASLEAWLEEHEKYRSV 875
Cdd:PRK13721 801 FVQQKRKEGLSIHEAVWQLAWKKFGPEMASLEAWLEEHEKYRSV 844
|
|
| TraC-F-type |
TIGR02746 |
type-IV secretion system protein TraC; The protein family described here is common among the F, ... |
44-854 |
0e+00 |
|
type-IV secretion system protein TraC; The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Pssm-ID: 274279 [Multi-domain] Cd Length: 797 Bit Score: 1009.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 44 LLPYRDYNQESGLFMNDTTMGFMLEAIPINGANESIVEALDHMLRTKLPRGIPLCIHLMSSQLVGDRIEYGLREFSWSGE 123
Cdd:TIGR02746 1 WLPYRAYDEESGIFMNRHSMGFGLELTPLSGADESLVESLSSLLRTDLPEGTDIQVLLWGSPQIGPFLDRNEEQFSQNGG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 124 QAERFNAITRAYYMKAAATQFplpeGMNLPLTLRHYRVFISYCSPSKKKSRADILEMENLVKIIRASLQGASITTQTVDA 203
Cdd:TIGR02746 81 ILEKLARNRVKYYLNAAQKGF----FKNSGVTLRDFRLFLSVSIPFKSPNEDVIQELRSLRERIESTLRSAGFGCRRVDA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 204 QAFIDIVGEMINHNPDSLYPKRRQLDPYSDLNYQCVEDSFDLKVRADYLTLGLRENGRNSTARILNFHLARNPEIAFLWN 283
Cdd:TIGR02746 157 EDLLSLVREMLNPDPDSIHPWPISYDPNQLLRDQIVDPDTDLEVHEGGLEVDHEDNQGEVKTRIRVFSIKRFPEEFTLWQ 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 284 MADNYSNLLNPELSISCPFILTLTLVVEDQVKTHSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGELRQRLGSGQSSV 363
Cdd:TIGR02746 237 TGNLIGDLLNPSLQITCPFLLSFTVRVEDQVKKKAKATAKAKDLNKQAKSSMAKWVPSLEKKLKEIKYLREAIASGGDSL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 364 VSYFLNITAFCkdNNETALEVEQDILNSFRKNGFELISPRFNHMRNFLTCLPFMAGKGLFKQLKEAGVVQRAESFNVANL 443
Cdd:TIGR02746 317 VSMYYNVLLFT--NPDNLRRDVEAAKSSFRKNGFDLAEDKRIQLQAFLAALPFNPTEGLFEDLKKAGRVRTLSSANAVNL 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 444 MPLVADNPLTP-AGLLAPTYRNQLAFIDIFFRGMnnTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYKS 522
Cdd:TIGR02746 395 LPLIADWKGTKgSGLLLPTRRGQLSAFDPFDSDS--TNYNIAVVGGSGAGKSFFMQELIVDNLSRGGKVWVIDVGRSYKK 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 523 LCENMGGVYLDGE---TLRFNPFA--NITDIDQSAERVRDQLSVMASPNGNLDEVHEGLLLQAVRASWLAKENRARIDDV 597
Cdd:TIGR02746 473 LCEMLGGTYIEFSpesNICLNPFTgnNVTEIDDEIDQITALIALMASPEGGLSDEQRSTLEEAILAAWKEYGNEATITDV 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 598 VDFLKNASDSEQYaesptirSRLDEMIVLLDQYTANGTYGQYFNSdEPSLRDDAKMVVLELGGLEDRPSLLVAVMFSLII 677
Cdd:TIGR02746 553 QDALQQLEDDEND-------PRIKDLGKMLNPYTSHGVYGRYFNG-PNNLDFSNRFVVLELEELEDRPDLQAVVLFSLMV 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 678 YIENRMYRTPRNLKKLNVIDEGWRLLDFKNHKVGEFIEKGYRTARRHTGAYITITQNIVDFDSdkaSSAARAAWGNSSYK 757
Cdd:TIGR02746 625 RITGEMYLTPRKRRKICIIDEAWSLLDGANPQAADFIETGYRRARKYGGAFITITQGIEDFYS---SPEARAAYANSDWK 701
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 758 IILKQSAKEFAKYNQLYPDQFLPLQRDMIGKFGAAKDQwFSSFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFEFVQQKR 837
Cdd:TIGR02746 702 IILRQSAESIAKLKAENPFTFSPFEKRLIKSLRTAKGA-FSELLIRSGEGSSVHRLFVDPFSRVLFSTDGPEFEEVEELR 780
|
810
....*....|....*..
gi 445991900 838 KEGLSIHEAVWQLAWKK 854
Cdd:TIGR02746 781 EQGLSLEEAIEQLAQKH 797
|
|
| VirB4 |
COG3451 |
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ... |
288-840 |
4.32e-115 |
|
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain] Cd Length: 546 Bit Score: 361.96 E-value: 4.32e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 288 YSNLLNPELSISCPFILTLTLVVEDQVKTHSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGELRQRLGSGQSSVVSYF 367
Cdd:COG3451 23 SPGLLDPLLQLPCEFIVTQSFTPLDKDEALKKLKRKRRRLESKRKSEQALVDDDAESQAEDAEEALDELQSGGERLGEVH 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 368 LNITAFCKDNNEtALEVEQDILNSFRKNGFELISPRFNHMRNFLTCLPFMAGKGLFKQLkeagvvqrAESFNVANLMPLV 447
Cdd:COG3451 103 LTLTVFADDLEE-LEEAVREVESALQSAGFTLVRETLNQEEAFLSSLPGNFDYRLRRRL--------LTTSNLAALFPFH 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 448 ADNPLTPAGL-LAPTYRNQLAFIDIFFRgmnNTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYKSLCEN 526
Cdd:COG3451 174 SFELGDPWGIyLLNTRSGTPVFFDFHDG---LDNGNTLILGPSGSGKSFLLKLLLLQLLRYGARIVIFDPGGSYEILVRA 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 527 MGGVYLD---GETLRFNPFAnITDIDQSAERVRDQLSVMASPNG-NLDEVHEGLLLQAVRASW--LAKENRARIDDVVDF 600
Cdd:COG3451 251 LGGTYIDlspGSPTGLNPFD-LEDTEEKRDFLLELLELLLGREGePLTPEERAAIDRAVRALYrrADPEERTTLSDLYEL 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 601 LKNASDSEQYAESptirsrldemivlLDQYTANGTYGQYFNSDEPSLRDDAKMVVLELGGLEDRPSLLVAVMFSLIIYIE 680
Cdd:COG3451 330 LKEQPEAKDLAAR-------------LEPYTKGGSYGWLFDGPTNLDLSDARFVVFDLTELLDNPELRPPVLLYLLHRIW 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 681 NRMYRTPRNLKKLNVIDEGWRLLDfkNHKVGEFIEKGYRTARRHTGAYITITQNIVDFDSdkaSSAARAAWGNSSYKIIL 760
Cdd:COG3451 397 NRLRKNNDGRPTLIVIDEAWLLLD--NPAFAEFLEEWLKTLRKYNGAVIFATQSVEDFLS---SPIAEAIIENSATKILL 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 761 KQSAKEFAKYNQLYpdQFLPLQRDMIGKFGAAKDQwfssFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFEFVQQKRKEG 840
Cdd:COG3451 472 PQPKADIEDYAELL--GLSERELELIRSAGRGKRD----FLIKQGNGSVVFRLDLSPEELALLSTKPEEVAILDELRAEH 545
|
|
| TraC_F_IV |
pfam11130 |
TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a ... |
39-277 |
1.47e-60 |
|
TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a cytoplasmic, peripheral membrane protein and is one of the proteins encoded by the F transfer region of the conjugative plasmid that is required for the assembly of F pilin into the mature F pilus structure. F pili are filamentous appendages that help establish the physical contact between donor and recipient cells involved in the conjugation process.
Pssm-ID: 431669 [Multi-domain] Cd Length: 232 Bit Score: 205.21 E-value: 1.47e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 39 PQFSRLLPYRDYNQESGLFMN-DTTMGFMLEAIPINGANESIVEALDHMLRTKLPRGIPLCIHLMSSQLVGDRIEYgLRE 117
Cdd:pfam11130 1 PSFSDLLPYVAYDPETGLFLNeDGSVGFVFELSPLGGADESVRDTLESLLSDDLPDGTPVQFLLFASPDIGPYLDR-LRD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 118 FSwSGEQAERFNAIT--RAYYMKAAATQFPlpeGMNLPLTLRHYRVFISYCSPSKKKSRADILEMENLVKIIRASLQGAS 195
Cdd:pfam11130 80 YR-LGEQGGHLRAIArpRGLFLDSGVTGSL---SADWRGQLRRFRLVLSRKVPGKADLPTPIEALNELRDRLEASLRSAG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 196 ITTQTVDAQAFIDIVGEMINHNPDSLYPKRRQLDPYSDLNYQCVEDSFDLKVRADYLTLGLRENgrnstARILNFHLARN 275
Cdd:pfam11130 156 LAARRLDPDDLIAWLRRWLNPDPSASWDPPADYDPDKDIAEQILDSDPRLDVEAGRLYFDGEPH-----RAVRVLSLRRF 230
|
..
gi 445991900 276 PE 277
Cdd:pfam11130 231 PE 232
|
|
| P-loop_TraG |
pfam19044 |
TraG P-loop domain; This entry represents the P-loop domain found in the TraG conjugation ... |
468-763 |
6.44e-16 |
|
TraG P-loop domain; This entry represents the P-loop domain found in the TraG conjugation protein.
Pssm-ID: 436917 [Multi-domain] Cd Length: 413 Bit Score: 81.03 E-value: 6.44e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 468 FIDIFFRGMNN---TNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYKSLCENMGGVYL---DGETLRFNP 541
Cdd:pfam19044 14 HVDISDEPMKKgiiTNRNKFILGPSGSGKSFFTNHMVRSYYEQGAHVVLVDVGHSYKGLCELVGGYYFtysEENPIRFNP 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 542 FAnITDidqsaervRDQLSVmaspngnldEVHEGL--LLQAV---------RASWLAKEN--------RARIDDVV---- 598
Cdd:pfam19044 94 FY-IGD--------GDVLDT---------EKKESIktLLLALwkkddesftRSEYVALSNaltlyyehLEKDPDIFpcfn 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 599 ---DFLKNasDSEQYAESPTIRSR---LDEMIVLLDQYTANGTYGQYFNSDEP----SLRddakMVVLELGGLEDRPSLL 668
Cdd:pfam19044 156 tfyEFLRD--EYLKVLEEDKVKEKdfdIDNFLYVLRPYYKGGEFDYLLNATENldllNER----FIVFELDNIKDHPILF 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 669 VAVmfSLII---YIeNRMyRTPRNLKKLNVIDEGWRLLDFKNhkVGEFIEKGYRTARRHTGAYITITQNIvdfdSDKASS 745
Cdd:pfam19044 230 PVV--TIIImevFI-SKM-RKLKGIRKMILIEEAWKAIAKEG--MAEYIKYLFKTVRKFFGEAIVVTQEV----DDIISS 299
|
330 340
....*....|....*....|
gi 445991900 746 A--ARAAWGNSSYKIILKQS 763
Cdd:pfam19044 300 PivKDAIINNSDCKILLDQR 319
|
|
| DUF5934 |
pfam19357 |
Family of unknown function (DUF5934); This presumed domain found in type IV secretion system ... |
290-446 |
1.11e-15 |
|
Family of unknown function (DUF5934); This presumed domain found in type IV secretion system proteins is functionally uncharacterized. This domain family is found in proteobacteria, and is approximately 170 amino acids in length. The family is found in association with pfam11130. There are two conserved sequence motifs: GWDL and QGEY.
Pssm-ID: 437189 [Multi-domain] Cd Length: 172 Bit Score: 75.51 E-value: 1.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 290 NLLNPELSISCPFILTLTLVVEDQVKTHSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGELRQRLGSGQsSVVSYFLN 369
Cdd:pfam19357 3 DMFNDKLRLPCPVATSLCLVYPDQEAASSKAGYKFMRTTSLADSKSARFLPQLKEQSAEWQHVQDELRQGR-KLVRAFYS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 370 ITAFCK----DNNETALEveqdilNSFRKNGFELISPRFNHMRNFLTCLPFMAGKGLFKQLKEAGVVQRAESFNVANLMP 445
Cdd:pfam19357 82 VTAFSPkgkgDAHERTLK------SVYKAAGWDLIDERYLQIMGLLAAMPLTLADGLASDLERMKRFRTMLTTTAANIAP 155
|
.
gi 445991900 446 L 446
Cdd:pfam19357 156 L 156
|
|
| HerA |
COG0433 |
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ... |
479-761 |
3.34e-15 |
|
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain] Cd Length: 388 Bit Score: 78.50 E-value: 3.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 479 TNYNMAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYKSLCENMG-----GVY--LDGETLRFNPFanitDIDQS 551
Cdd:COG0433 46 LNRHILILGATGSGKSNTLQVLLEELSRAGVPVLVFDPHGEYSGLAEPGAeradvGVFdpGAGRPLPINPW----DLFAT 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 552 AERVRDqlsvMASPNGNLDEVHEGLLLQAVRASWLAKENRARIDDVVDFLKNASDSEQY---AESPTIRSRLDEMIVLLD 628
Cdd:COG0433 122 ASELGP----LLLSRLDLNDTQRGVLREALRLADDKGLLLLDLKDLIALLEEGEELGEEygnVSAASAGALLRRLESLES 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 629 qytangtYGQYFNSDEPS----LRDDAKMVVLELGGLEDRPSLLVAVMFSLIIYIENRMYRTPRNLKK--LNVIDEGWRL 702
Cdd:COG0433 198 -------ADGLFGEPGLDledlLRTDGRVTVIDLSGLPEELQSTFVLWLLRELFEARPEVGDADDRKLplVLVIDEAHLL 270
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 445991900 703 LDFKNHKVGEFIEkgyRTARR----HTGAYItITQNIVDFDSDkassaaraAWGNSSYKIILK 761
Cdd:COG0433 271 APAAPSALLEILE---RIAREgrkfGVGLIL-ATQRPSDIDED--------VLSQLGTQIILR 321
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
482-770 |
8.67e-15 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 77.33 E-value: 8.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 482 NMAVCGTSGAGKT-GLIQPLIRSvLDSGGFAVVFDM-GDGYK---SLCENMGG--VYLD----GETLRFNPFANITDIDQ 550
Cdd:COG3505 1 HVLVIGPTGSGKTvGLVIPNLTQ-LARGESVVVTDPkGDLAEltaGFRRRAGYdvYVFDpfdpERSHRWNPLDEIRDPAD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 551 sAERVRDQLSVMASPNGNLDEV---HEGLLLQAVrASWLAKENRARIDDVVDFLknASDSEQYAE---------SPTIRS 618
Cdd:COG3505 80 -AQELAEALIPALGGGGGGDPFwreAARALLAAL-ILALAEEGRRTLADVYRLL--SEPEEELREllealpespHPPVAD 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 619 RLDEMIVLLDQYTA--------------NGTYGQYFNSDEPSLRD--DAKMVVLELGGLEDRPSL--LVAVMFSLIIyie 680
Cdd:COG3505 156 TLAAFLNAAEKTRSsvlstlasalellsDPEVAALTSGSDFDLRDliREKGTLYLVLPPDDLSTLapLLRLLLSQLI--- 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 681 NRMYRTPRNLKKLN-----VIDEgwrlldFKNHKVGEFIEKGYRTARRHTGAYITITQNIVDFDSDKASSAARAAWGNSS 755
Cdd:COG3505 233 RALLRRAERSGRLPrpvllLLDE------FANLGRLPSLETLLATGRGYGIRLVLILQSLAQLEAIYGEEGAETILGNCG 306
|
330
....*....|....*
gi 445991900 756 YKIILKQSAKEFAKY 770
Cdd:COG3505 307 TKIFLGVNDPETAEY 321
|
|
| PRK13873 |
PRK13873 |
conjugal transfer ATPase TrbE; Provisional |
483-704 |
2.89e-06 |
|
conjugal transfer ATPase TrbE; Provisional
Pssm-ID: 237536 [Multi-domain] Cd Length: 811 Bit Score: 51.07 E-value: 2.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 483 MAVCGTSGAGKT---GLIQPLIRSVLDSGGFAvvFDMGDGYKSLCENMGGVYLD-----GETLRFNPFAnitDIDQSAER 554
Cdd:PRK13873 444 TLVVGPTGAGKSvllALMALQFRRYPGAQVFA--FDFGGSIRAATLAMGGDWHDlgggaDGSVALQPLA---RIDDEAER 518
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 555 vrdqlsvmaspngnldevheglllqAVRASW----LAKENRARIDDVVDFLKNASDSeqYAESPTIRSRLDEMIVLLDQ- 629
Cdd:PRK13873 519 -------------------------AWAAEWiagiLAREGVAVTPEVKEHIWSALTS--LASAPVEERTLTGLSVLLQSn 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 630 --------YTANGTYGQYFNSDEPSLrDDAKMVVLELGGLEDRPSLLVAVMFSLIIYIENRMYRTPrnlkKLNVIDEGWR 701
Cdd:PRK13873 572 alkqalapYCLGGPHGRLLDADAERL-GSADVQAFEMEGLMGTKAAAPAVLSYLFHRIEDRFDGRP----TLLILDEAWL 646
|
...
gi 445991900 702 LLD 704
Cdd:PRK13873 647 FLD 649
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
668-760 |
6.80e-05 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 43.75 E-value: 6.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 668 LVAVMFSLIIYIENRMYRTP---RNLKKLNVIDEgwrlldFKNHKVGEFIEKGYRTARRHTGAYITITQNIVDFDSDKAS 744
Cdd:cd01127 53 LRALFFNQLFRALTELASLSpgrLPRRVWFILDE------FANLGRIPNLPNLLATGRKRGISVVLILQSLAQLEAVYGK 126
|
90
....*....|....*.
gi 445991900 745 SAARAAWGNSSYKIIL 760
Cdd:cd01127 127 DGAQTILGNCNTKLYL 142
|
|
| TrwB_AAD_bind |
pfam10412 |
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling ... |
483-770 |
1.72e-03 |
|
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Pssm-ID: 431268 [Multi-domain] Cd Length: 386 Bit Score: 41.51 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 483 MAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYkslcenMGGVYLDGETLRFNPF---------ANITDIDQSAE 553
Cdd:pfam10412 18 TLIIGTTGSGKTQALRGLLDQARARGDRAIIFDLTGAF------TERFYDPGRDILLNPLdarspawspFAECKTPADFA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 554 RVRDQLSVmASPNGNLD-------EVHEGLLLQAVR---ASWLAKEN---RARIDDVVDFLKNAS-------DSEQYAES 613
Cdd:pfam10412 92 AIAAALIP-EDGGGSDPfwalaarTVLVDTLRALQRtgrKTNAALLRallTADLDELHELLAGTAaapltapEAERTTAS 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 614 ptIRSRLDEMIVLLdQYTANGtyGQYF-------NSDEPSL----RDDAKMVVLelggledRPslLVAVMFSLIIyieNR 682
Cdd:pfam10412 171 --IRATLATNLRAL-RFLAPD--GERFsirewitEEDPGGWlfitYRADQRAAL-------RP--LLSCWLDLAI---RA 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 683 MYRTPRN--LKKLNVIDEGWRLldfknHKVgEFIEKGYRTARRHTGAYITITQNIVDFDSDKASSAARAAWGNSSYKIIL 760
Cdd:pfam10412 234 LLSLPPSrdRRLWFFLDELPAL-----GRL-PSLKDLLAEGRKFGGAVVLGLQSIAQLREIYGEDGAQTILSNCGTKLIL 307
|
330
....*....|
gi 445991900 761 KQSAKEFAKY 770
Cdd:pfam10412 308 RVSDGETAEL 317
|
|
| DUF87 |
pfam01935 |
Helicase HerA, central domain; This entry represents the central domain found in archaeal ... |
483-670 |
8.26e-03 |
|
Helicase HerA, central domain; This entry represents the central domain found in archaeal proteins such as DNA double-strand break repair helicase HerA (EC:3.6.4.12). HerA is a helicase which is able to utilize either 3' or 5' single-stranded DNA extensions for loading and subsequent DNA duplex unwinding. It forms a complex with NurA nuclease, this complex has the 5'-3' DNA end resection activity and is essential for cell viability in the crenarchaeon Sulfolobus islandicus. This domain includes the the central RecA-like catalytic core and a flanking four-helix bundle. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Pssm-ID: 376671 [Multi-domain] Cd Length: 220 Bit Score: 38.89 E-value: 8.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 483 MAVCGTSGAGKTGLIQPLIRSVLDSGGFAV-VFDMGDGYKSLCENMGGvyldGETLRFNPFANITdIDQSAERVRDQLSV 561
Cdd:pfam01935 26 FAILGSTGSGKSNTVAVLLEELLEKKGATVlIFDPHGEYGTLFRDLGA----ENVNVITPDPELK-INPWLLSPEDLADL 100
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90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445991900 562 MASPNGNLDEVHEGLLLQAVRASWLAKENRARIDDVVDFLKNasdSEQYAESPTIRSRLDEMIVLLDQYTANGTYGQYFN 641
Cdd:pfam01935 101 LEELNLPNAEVQRSILEEALDQLKSEELGKLSIDELIEKILE---ELLTEAAELNKLSNDAIRRVLDKLERLLRSGGLIL 177
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170 180 190
....*....|....*....|....*....|....*.
gi 445991900 642 SDEPSLRD-------DAKMVVLELGGLEDRPSLLVA 670
Cdd:pfam01935 178 TSTDIIKLildilskGGKVNIIDLSGVDELLQDLVV 213
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