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Conserved domains on  [gi|445995980|ref|WP_000073835|]
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MULTISPECIES: DNA-binding protein [Enterobacterales]

Protein Classification

Putative_G5P domain-containing protein( domain architecture ID 13879837)

Putative_G5P domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Putative_G5P pfam17426
Putative Gamma DNA binding protein G5P; This domain family is found in Gammaproteobacterial ...
 2-104 7.03e-49

Putative Gamma DNA binding protein G5P; This domain family is found in Gammaproteobacterial proteins. Members of the family are predicted to be G5P DNA binding proteins. Homologous proteins are found in pfam02303


:

Pssm-ID: 435909  Cd Length: 108  Bit Score: 150.90  E-value: 7.03e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445995980    2 SNYGLFVKGKMLGARQR---NKVNGQ-GYYNEIGVGLEIPDGFGGTKQDQIIIRVSQALVNAGVMNQANNFIGKLVQIPV 77
Cdd:pfam17426   1 MNTGFFIKGKLLGAKQRsftHKENGEvGYKHEIGIGLEDPDGFGGTKQDQIDIRIDEALVNAGLMNQAENFIGKLVMILV 80

                          90       100
                  ....*....|....*....|....*...
gi 445995980   78 YVRVWSME-GREGVTYNISSDGGITEIK 104
Cdd:pfam17426  81 FPREWAMEgGREGIIYHFDEDGGIEEIK 108
 
Name Accession Description Interval E-value
Putative_G5P pfam17426
Putative Gamma DNA binding protein G5P; This domain family is found in Gammaproteobacterial ...
 2-104 7.03e-49

Putative Gamma DNA binding protein G5P; This domain family is found in Gammaproteobacterial proteins. Members of the family are predicted to be G5P DNA binding proteins. Homologous proteins are found in pfam02303


Pssm-ID: 435909  Cd Length: 108  Bit Score: 150.90  E-value: 7.03e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445995980    2 SNYGLFVKGKMLGARQR---NKVNGQ-GYYNEIGVGLEIPDGFGGTKQDQIIIRVSQALVNAGVMNQANNFIGKLVQIPV 77
Cdd:pfam17426   1 MNTGFFIKGKLLGAKQRsftHKENGEvGYKHEIGIGLEDPDGFGGTKQDQIDIRIDEALVNAGLMNQAENFIGKLVMILV 80

                          90       100
                  ....*....|....*....|....*...
gi 445995980   78 YVRVWSME-GREGVTYNISSDGGITEIK 104
Cdd:pfam17426  81 FPREWAMEgGREGIIYHFDEDGGIEEIK 108
 
Name Accession Description Interval E-value
Putative_G5P pfam17426
Putative Gamma DNA binding protein G5P; This domain family is found in Gammaproteobacterial ...
 2-104 7.03e-49

Putative Gamma DNA binding protein G5P; This domain family is found in Gammaproteobacterial proteins. Members of the family are predicted to be G5P DNA binding proteins. Homologous proteins are found in pfam02303


Pssm-ID: 435909  Cd Length: 108  Bit Score: 150.90  E-value: 7.03e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 445995980    2 SNYGLFVKGKMLGARQR---NKVNGQ-GYYNEIGVGLEIPDGFGGTKQDQIIIRVSQALVNAGVMNQANNFIGKLVQIPV 77
Cdd:pfam17426   1 MNTGFFIKGKLLGAKQRsftHKENGEvGYKHEIGIGLEDPDGFGGTKQDQIDIRIDEALVNAGLMNQAENFIGKLVMILV 80

                          90       100
                  ....*....|....*....|....*...
gi 445995980   78 YVRVWSME-GREGVTYNISSDGGITEIK 104
Cdd:pfam17426  81 FPREWAMEgGREGIIYHFDEDGGIEEIK 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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