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Conserved domains on  [gi|446035797|ref|WP_000113652|]
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MULTISPECIES: phage terminase small subunit P27 family [Bacillus cereus group]

Protein Classification

COG3747 family protein( domain architecture ID 10007944)

COG3747 family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
COG3747 COG3747
Phage terminase, small subunit [Mobilome: prophages, transposons];
1-169 1.15e-37

Phage terminase, small subunit [Mobilome: prophages, transposons];


:

Pssm-ID: 442961  Cd Length: 148  Bit Score: 126.64  E-value: 1.15e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446035797   1 MARPREPVDLVVLKGkkHLTKAEIANRkskEIKAPSDKIRAPSYLPKDLRRDFKKISDELIRIEIMSNLDVDALARFLIA 80
Cdd:COG3747    1 RGRKPKPTALKLLKG--NPGKREINKR---EPKPPTDVPEPPKWLSEEAKKEWKRIAPELIAMGILTNLDLAALAAYCQA 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446035797  81 RKMYVEITNAMlelspleevvdvkkDQEGNII-SENRYTVSNgvysDLLINQDKLFKQCRQASSDLGLTITSRCRLVVPK 159
Cdd:COG3747   76 YARYREAEEEI--------------AEEGLTYeTESGYLKKN----PAVAIKNDATKQMRRLAAELGLTPASRARLAIPK 137
                        170
                 ....*....|
gi 446035797 160 QNDEKPQNKF 169
Cdd:COG3747  138 PQEEEEDDPF 147
 
Name Accession Description Interval E-value
COG3747 COG3747
Phage terminase, small subunit [Mobilome: prophages, transposons];
1-169 1.15e-37

Phage terminase, small subunit [Mobilome: prophages, transposons];


Pssm-ID: 442961  Cd Length: 148  Bit Score: 126.64  E-value: 1.15e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446035797   1 MARPREPVDLVVLKGkkHLTKAEIANRkskEIKAPSDKIRAPSYLPKDLRRDFKKISDELIRIEIMSNLDVDALARFLIA 80
Cdd:COG3747    1 RGRKPKPTALKLLKG--NPGKREINKR---EPKPPTDVPEPPKWLSEEAKKEWKRIAPELIAMGILTNLDLAALAAYCQA 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446035797  81 RKMYVEITNAMlelspleevvdvkkDQEGNII-SENRYTVSNgvysDLLINQDKLFKQCRQASSDLGLTITSRCRLVVPK 159
Cdd:COG3747   76 YARYREAEEEI--------------AEEGLTYeTESGYLKKN----PAVAIKNDATKQMRRLAAELGLTPASRARLAIPK 137
                        170
                 ....*....|
gi 446035797 160 QNDEKPQNKF 169
Cdd:COG3747  138 PQEEEEDDPF 147
sm_term_P27 TIGR01558
phage terminase, small subunit, putative, P27 family; This model describes a distinct family ...
40-172 1.91e-24

phage terminase, small subunit, putative, P27 family; This model describes a distinct family of phage (and integrated prophage) putative terminase small subunit. Members tend to be adjacent to the phage terminase large subunit gene. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273691  Cd Length: 116  Bit Score: 91.71  E-value: 1.91e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446035797   40 RAPSYLPKDLRRDFKKISDELIRIEIMSNLDVDALARFLIARKMYVEITNAMLElspleevvdvkkdqEGNIisenrYTV 119
Cdd:TIGR01558   1 RAPDWLGKEGKDEWKRVAPELKGSGILTNLDRDALLRYCEAYDRYREATDDLEA--------------TGIT-----ATV 61
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 446035797  120 SNG--VYSDLLINQDKLFKQCRQASSDLGLTITSRCRLVVPKQNDEKPQNKFNKF 172
Cdd:TIGR01558  62 EDGspKANPALTVVEDAFKQLRSIGSALGLTPSSRSRLVINVAKEDKKADPLEEF 116
Terminase_4 pfam05119
Phage terminase, small subunit;
53-160 5.88e-12

Phage terminase, small subunit;


Pssm-ID: 461553 [Multi-domain]  Cd Length: 96  Bit Score: 58.80  E-value: 5.88e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446035797   53 FKKISDELIRIEIMSNLDVDALARFLIARKMYVEITNAMlelspleevvdvkkDQEGNIISEnrYTVSNGVYSDLLINQD 132
Cdd:pfam05119   5 WKRIAPELEELGLLTELDVAALAAYCEAYARYREAERDI--------------AEEGLTIET--TNGNNLKKNPAVAIAN 68
                          90       100
                  ....*....|....*....|....*...
gi 446035797  133 KLFKQCRQASSDLGLTITSRCRLVVPKQ 160
Cdd:pfam05119  69 DALKQMRKLAAELGLTPSSRSRLAVEKE 96
 
Name Accession Description Interval E-value
COG3747 COG3747
Phage terminase, small subunit [Mobilome: prophages, transposons];
1-169 1.15e-37

Phage terminase, small subunit [Mobilome: prophages, transposons];


Pssm-ID: 442961  Cd Length: 148  Bit Score: 126.64  E-value: 1.15e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446035797   1 MARPREPVDLVVLKGkkHLTKAEIANRkskEIKAPSDKIRAPSYLPKDLRRDFKKISDELIRIEIMSNLDVDALARFLIA 80
Cdd:COG3747    1 RGRKPKPTALKLLKG--NPGKREINKR---EPKPPTDVPEPPKWLSEEAKKEWKRIAPELIAMGILTNLDLAALAAYCQA 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446035797  81 RKMYVEITNAMlelspleevvdvkkDQEGNII-SENRYTVSNgvysDLLINQDKLFKQCRQASSDLGLTITSRCRLVVPK 159
Cdd:COG3747   76 YARYREAEEEI--------------AEEGLTYeTESGYLKKN----PAVAIKNDATKQMRRLAAELGLTPASRARLAIPK 137
                        170
                 ....*....|
gi 446035797 160 QNDEKPQNKF 169
Cdd:COG3747  138 PQEEEEDDPF 147
sm_term_P27 TIGR01558
phage terminase, small subunit, putative, P27 family; This model describes a distinct family ...
40-172 1.91e-24

phage terminase, small subunit, putative, P27 family; This model describes a distinct family of phage (and integrated prophage) putative terminase small subunit. Members tend to be adjacent to the phage terminase large subunit gene. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273691  Cd Length: 116  Bit Score: 91.71  E-value: 1.91e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446035797   40 RAPSYLPKDLRRDFKKISDELIRIEIMSNLDVDALARFLIARKMYVEITNAMLElspleevvdvkkdqEGNIisenrYTV 119
Cdd:TIGR01558   1 RAPDWLGKEGKDEWKRVAPELKGSGILTNLDRDALLRYCEAYDRYREATDDLEA--------------TGIT-----ATV 61
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 446035797  120 SNG--VYSDLLINQDKLFKQCRQASSDLGLTITSRCRLVVPKQNDEKPQNKFNKF 172
Cdd:TIGR01558  62 EDGspKANPALTVVEDAFKQLRSIGSALGLTPSSRSRLVINVAKEDKKADPLEEF 116
Terminase_4 pfam05119
Phage terminase, small subunit;
53-160 5.88e-12

Phage terminase, small subunit;


Pssm-ID: 461553 [Multi-domain]  Cd Length: 96  Bit Score: 58.80  E-value: 5.88e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446035797   53 FKKISDELIRIEIMSNLDVDALARFLIARKMYVEITNAMlelspleevvdvkkDQEGNIISEnrYTVSNGVYSDLLINQD 132
Cdd:pfam05119   5 WKRIAPELEELGLLTELDVAALAAYCEAYARYREAERDI--------------AEEGLTIET--TNGNNLKKNPAVAIAN 68
                          90       100
                  ....*....|....*....|....*...
gi 446035797  133 KLFKQCRQASSDLGLTITSRCRLVVPKQ 160
Cdd:pfam05119  69 DALKQMRKLAAELGLTPSSRSRLAVEKE 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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