NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446043978|ref|WP_000121833|]
View 

MULTISPECIES: 50S ribosomal protein L7ae-like protein [Bacillus]

Protein Classification

ribosomal L7Ae/L30e/S12e/Gadd45 family protein; 60S ribosomal protein L30( domain architecture ID 10012792)

ribosomal L7Ae/L30e/S12e/Gadd45 family protein may be characterized as a K-turn binding protein; K-turns are RNA motifs comprised of a bulge flanked by canonical and noncanonical helices.| 60S ribosomal protein L30 may participate in a key bridging interaction between the large and small ribosomal subunits

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK06683 PRK06683
hypothetical protein; Provisional
 1-82 2.12e-43

hypothetical protein; Provisional


:

Pssm-ID: 136002  Cd Length: 82  Bit Score: 135.21  E-value: 2.12e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446043978  1 MSYQKVSNAENVVVGHKRTLEAIKNGIVKEVVIAEDADVRLTHVIIRTALQHNIPITKVESVRKLGKVSGIQVGASAIGI 80
Cdd:PRK06683  1 MSYQKVSNAENVVVGHKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRKLGKVAGIQVGASAIGI 80


                ..
gi 446043978 81 IS 82
Cdd:PRK06683 81 IS 82
 
Name Accession Description Interval E-value
PRK06683 PRK06683
hypothetical protein; Provisional
 1-82 2.12e-43

hypothetical protein; Provisional


Pssm-ID: 136002  Cd Length: 82  Bit Score: 135.21  E-value: 2.12e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446043978  1 MSYQKVSNAENVVVGHKRTLEAIKNGIVKEVVIAEDADVRLTHVIIRTALQHNIPITKVESVRKLGKVSGIQVGASAIGI 80
Cdd:PRK06683  1 MSYQKVSNAENVVVGHKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRKLGKVAGIQVGASAIGI 80


                ..
gi 446043978 81 IS 82
Cdd:PRK06683 81 IS 82
Rpl7Ae COG1358
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
 1-81 5.25e-11

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440969 [Multi-domain]  Cd Length: 98  Bit Score: 53.24  E-value: 5.25e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446043978  1 MSYQKVSNAENVVVGHKRTLEAIKNGIVKEVVIAEDADVRLTHVIIRTALQHNIPITKVESVRKLGKVSGiQVGASAIGI 80
Cdd:COG1358   5 NLLGLARRAGKLVSGEEQVLKAIRKGKAKLVIIAEDASENTKKKLLDLCEEYGVPVVEVGTKEELGKAIG-KVGRAVVAI 83


                .
gi 446043978 81 I 81
Cdd:COG1358  84 T 84
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
 4-81 1.80e-07

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 44.12  E-value: 1.80e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446043978   4 QKVSNAENVVVGHKRTLEAIKNGIVKEVVIAEDAD-VRLTHVIIRTALQHNIPITKVESVRKLGKVSGIQVGASAIGII 81
Cdd:pfam01248  8 KKALKTGKLVLGLKEVTKALERGEAKLVIIAEDCDpEEKVKLIPALCKEKNVPYVKVPSKKELGEACGKKRPVSALAIK 86
 
Name Accession Description Interval E-value
PRK06683 PRK06683
hypothetical protein; Provisional
 1-82 2.12e-43

hypothetical protein; Provisional


Pssm-ID: 136002  Cd Length: 82  Bit Score: 135.21  E-value: 2.12e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446043978  1 MSYQKVSNAENVVVGHKRTLEAIKNGIVKEVVIAEDADVRLTHVIIRTALQHNIPITKVESVRKLGKVSGIQVGASAIGI 80
Cdd:PRK06683  1 MSYQKVSNAENVVVGHKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRKLGKVAGIQVGASAIGI 80


                ..
gi 446043978 81 IS 82
Cdd:PRK06683 81 IS 82
PRK13602 PRK13602
50S ribosomal protein L7ae-like protein;
1-81 5.22e-25

50S ribosomal protein L7ae-like protein;


Pssm-ID: 184174 [Multi-domain]  Cd Length: 82  Bit Score: 88.68  E-value: 5.22e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446043978  1 MSYQKVSNAENVVVGHKRTLEAIKNGIVKEVVIAEDADVRLTHVIIRTALQHNIPITKVESVRKLGKVSGIQVGASAIGI 80
Cdd:PRK13602  1 MSYEKVSQAKSIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKKLGKACGIEVGAAAVAI 80


                .
gi 446043978 81 I 81
Cdd:PRK13602 81 I 81
Rpl7Ae COG1358
Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure ...
 1-81 5.25e-11

Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein L7Ae or related RNA K-turn-binding protein is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440969 [Multi-domain]  Cd Length: 98  Bit Score: 53.24  E-value: 5.25e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446043978  1 MSYQKVSNAENVVVGHKRTLEAIKNGIVKEVVIAEDADVRLTHVIIRTALQHNIPITKVESVRKLGKVSGiQVGASAIGI 80
Cdd:COG1358   5 NLLGLARRAGKLVSGEEQVLKAIRKGKAKLVIIAEDASENTKKKLLDLCEEYGVPVVEVGTKEELGKAIG-KVGRAVVAI 83


                .
gi 446043978 81 I 81
Cdd:COG1358  84 T 84
PRK13600 PRK13600
putative ribosomal protein L7Ae-like; Provisional
 1-82 1.66e-09

putative ribosomal protein L7Ae-like; Provisional


Pssm-ID: 184172  Cd Length: 84  Bit Score: 49.46  E-value: 1.66e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446043978  1 MSYQKVS--NAENVVVGHKRTLEAIKNGIVKEVVIAEDADVRLTHVIIRTALQHNIPITKVESVRKLGKVSGIQVGASAI 78
Cdd:PRK13600  1 MSKEKVArfNKQHFVVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGINVNATIV 80


                ....
gi 446043978 79 GIIS 82
Cdd:PRK13600 81 ALIK 84
PRK13601 PRK13601
putative L7Ae-like ribosomal protein; Provisional
 13-77 1.68e-08

putative L7Ae-like ribosomal protein; Provisional


Pssm-ID: 184173  Cd Length: 82  Bit Score: 46.90  E-value: 1.68e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446043978 13 VVGHKRTLEAIKNGIVKEVVIAEDADVRLTHVIIRTALQHNIPITKVESVRKLGKVSGIQVGASA 77
Cdd:PRK13601 10 VVGAKQTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKELGVMCGIDVGAAA 74
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
 4-81 1.80e-07

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 44.12  E-value: 1.80e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446043978   4 QKVSNAENVVVGHKRTLEAIKNGIVKEVVIAEDAD-VRLTHVIIRTALQHNIPITKVESVRKLGKVSGIQVGASAIGII 81
Cdd:pfam01248  8 KKALKTGKLVLGLKEVTKALERGEAKLVIIAEDCDpEEKVKLIPALCKEKNVPYVKVPSKKELGEACGKKRPVSALAIK 86
PRK01018 PRK01018
50S ribosomal protein L30e; Reviewed
 2-81 7.40e-04

50S ribosomal protein L30e; Reviewed


Pssm-ID: 179205 [Multi-domain]  Cd Length: 99  Bit Score: 34.94  E-value: 7.40e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446043978  2 SYQKVSNAENVVVGHKRTLEAIKNGIVKEVVIAEDADVRLTHVIIRTALQHNIPITKVE-SVRKLGKVSGIQVGASAIGI 80
Cdd:PRK01018  7 ELRVAVDTGKVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEgSSVELGTLCGKPFTVSALAI 86


                .
gi 446043978 81 I 81
Cdd:PRK01018 87 V 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH