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Conserved domains on  [gi|446055533|ref|WP_000133388|]
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MULTISPECIES: DUF3168 domain-containing protein [Gammaproteobacteria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3168 super family cl12902
Protein of unknown function (DUF3168); This family of proteins has no known function but is ...
 8-88 1.07e-04

Protein of unknown function (DUF3168); This family of proteins has no known function but is likely to be a component of bacteriophage.


The actual alignment was detected with superfamily member pfam11367:

Pssm-ID: 448731  Cd Length: 117  Bit Score: 38.51  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446055533    8 PHLAHLAGGQVYPYVvplldgRPSVALPWVVFSLISSVSADVMGGQAEsSVSVQIDVYAGTVT--QARQIRQDAREAIML 85
Cdd:pfam11367  10 PAVAALVGGRVYDRA------PQGAALPYIVLGPVQVRPASALCGDGA-EVRLQLDVWSRAPGraEAKALAAAVRAALDD 82


                  ...
gi 446055533   86 LAP 88
Cdd:pfam11367  83 AAL 85
 
Name Accession Description Interval E-value
DUF3168 pfam11367
Protein of unknown function (DUF3168); This family of proteins has no known function but is ...
 8-88 1.07e-04

Protein of unknown function (DUF3168); This family of proteins has no known function but is likely to be a component of bacteriophage.


Pssm-ID: 431845  Cd Length: 117  Bit Score: 38.51  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446055533    8 PHLAHLAGGQVYPYVvplldgRPSVALPWVVFSLISSVSADVMGGQAEsSVSVQIDVYAGTVT--QARQIRQDAREAIML 85
Cdd:pfam11367  10 PAVAALVGGRVYDRA------PQGAALPYIVLGPVQVRPASALCGDGA-EVRLQLDVWSRAPGraEAKALAAAVRAALDD 82


                  ...
gi 446055533   86 LAP 88
Cdd:pfam11367  83 AAL 85
 
Name Accession Description Interval E-value
DUF3168 pfam11367
Protein of unknown function (DUF3168); This family of proteins has no known function but is ...
 8-88 1.07e-04

Protein of unknown function (DUF3168); This family of proteins has no known function but is likely to be a component of bacteriophage.


Pssm-ID: 431845  Cd Length: 117  Bit Score: 38.51  E-value: 1.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446055533    8 PHLAHLAGGQVYPYVvplldgRPSVALPWVVFSLISSVSADVMGGQAEsSVSVQIDVYAGTVT--QARQIRQDAREAIML 85
Cdd:pfam11367  10 PAVAALVGGRVYDRA------PQGAALPYIVLGPVQVRPASALCGDGA-EVRLQLDVWSRAPGraEAKALAAAVRAALDD 82


                  ...
gi 446055533   86 LAP 88
Cdd:pfam11367  83 AAL 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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