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Conserved domains on  [gi|446057655|ref|WP_000135510|]
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MULTISPECIES: phage virion morphogenesis protein [Enterobacterales]

Protein Classification

phage virion morphogenesis protein( domain architecture ID 10009025)

phage virion morphogenesis protein similar to Haemophilus influenzae Mu-like prophage FluMu G proteins

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
gpG COG5005
Mu-like prophage protein gpG [Mobilome: prophages, transposons];
7-149 3.91e-43

Mu-like prophage protein gpG [Mobilome: prophages, transposons];


:

Pssm-ID: 444029  Cd Length: 146  Bit Score: 139.29  E-value: 3.91e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446057655   7 VNVTINDESLRRSLRALDLAATDLEPAMRKIAGTLLAETQFNFLDEGRPG------WTPSLAAQERDGQTLQDTGRLMGS 80
Cdd:COG5005    3 IEITLDDAELQRALARLAARLGDLTPLMRDIGEVLESSTEDRFETEKDPDgtpwapLSPSTLARRRGGKILQDTGDLRDS 82
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446057655  81 VSTDHDDRQAAVGTNVVYGPIHQFGGKTGRNESVELPARPFLPLTGDGELQpevvvpILDTIVRHLEAA 149
Cdd:COG5005   83 ITYQAGDDSVEVGSNLIYAAIHQFGGTKGAGGPVTIPARPFLGLSADDEAE------ILDILEDYLAEA 145
 
Name Accession Description Interval E-value
gpG COG5005
Mu-like prophage protein gpG [Mobilome: prophages, transposons];
7-149 3.91e-43

Mu-like prophage protein gpG [Mobilome: prophages, transposons];


Pssm-ID: 444029  Cd Length: 146  Bit Score: 139.29  E-value: 3.91e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446057655   7 VNVTINDESLRRSLRALDLAATDLEPAMRKIAGTLLAETQFNFLDEGRPG------WTPSLAAQERDGQTLQDTGRLMGS 80
Cdd:COG5005    3 IEITLDDAELQRALARLAARLGDLTPLMRDIGEVLESSTEDRFETEKDPDgtpwapLSPSTLARRRGGKILQDTGDLRDS 82
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446057655  81 VSTDHDDRQAAVGTNVVYGPIHQFGGKTGRNESVELPARPFLPLTGDGELQpevvvpILDTIVRHLEAA 149
Cdd:COG5005   83 ITYQAGDDSVEVGSNLIYAAIHQFGGTKGAGGPVTIPARPFLGLSADDEAE------ILDILEDYLAEA 145
Phage_tail_S pfam05069
Phage virion morphogenesis family; Protein S of phage P2 is thought to be involved in tail ...
11-147 8.12e-18

Phage virion morphogenesis family; Protein S of phage P2 is thought to be involved in tail completion and stable head joining.


Pssm-ID: 428290  Cd Length: 149  Bit Score: 74.74  E-value: 8.12e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446057655   11 INDESLRRSLRAL--DLAATDLEPAMRKIAGTLLAETQFNFLDEGRP---GWTPSL-------AAQERDGQTLQDTgRLM 78
Cdd:pfam05069   1 DDLQAVEDALDRLlaKLSPADRRPLMRAIGRELRRSQEQRFEAQQAPdgsPWAPRKdtlrskkGRIKRGGKMLAKL-RLA 79
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446057655   79 GSVSTDHDDRQAA-VGTNVVYGPIHQFGGKTGRNE------SVELPARPFLPLTGDGELQpevvvpILDTIVRHLE 147
Cdd:pfam05069  80 RSIKTDAGADGASvVGTNKRIAAIHQFGGTAGRGRvskggpKVRYPARPLLGFSDEDEQE------IEDILLAHLS 149
tail_comp_S TIGR01635
phage virion morphogenesis (putative tail completion) protein; This model describes protein S ...
22-146 6.10e-17

phage virion morphogenesis (putative tail completion) protein; This model describes protein S of phage P2, suggested experimentally to act in tail completion and stable head joining, and related proteins from a number of phage. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 130696  Cd Length: 144  Bit Score: 72.59  E-value: 6.10e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446057655   22 ALDLAATDLEPAMRKIAGTLLAETQFNFLDEGRPGWTPSLA-------AQERDGQTLQDTG--RLMGSVSTDHDDRQAAV 92
Cdd:TIGR01635  14 LQVLDPKTRDKMLRRIAAQLASSTRKNIEAQQDPDGSAWAArkkkvrsKKGRIGKILKKFTqkRLMKSRTSDYGLVVALI 93
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 446057655   93 GTNVVYGPIHQFGGK--TGRNESVELPARPFLPLTGDGELQpevvvpILDTIVRHL 146
Cdd:TIGR01635  94 GARERYAAIHQYGGKarSGRLRKVQYPARPFLGLTKTDEAE------IEAAIRKAL 143
 
Name Accession Description Interval E-value
gpG COG5005
Mu-like prophage protein gpG [Mobilome: prophages, transposons];
7-149 3.91e-43

Mu-like prophage protein gpG [Mobilome: prophages, transposons];


Pssm-ID: 444029  Cd Length: 146  Bit Score: 139.29  E-value: 3.91e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446057655   7 VNVTINDESLRRSLRALDLAATDLEPAMRKIAGTLLAETQFNFLDEGRPG------WTPSLAAQERDGQTLQDTGRLMGS 80
Cdd:COG5005    3 IEITLDDAELQRALARLAARLGDLTPLMRDIGEVLESSTEDRFETEKDPDgtpwapLSPSTLARRRGGKILQDTGDLRDS 82
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446057655  81 VSTDHDDRQAAVGTNVVYGPIHQFGGKTGRNESVELPARPFLPLTGDGELQpevvvpILDTIVRHLEAA 149
Cdd:COG5005   83 ITYQAGDDSVEVGSNLIYAAIHQFGGTKGAGGPVTIPARPFLGLSADDEAE------ILDILEDYLAEA 145
Phage_tail_S pfam05069
Phage virion morphogenesis family; Protein S of phage P2 is thought to be involved in tail ...
11-147 8.12e-18

Phage virion morphogenesis family; Protein S of phage P2 is thought to be involved in tail completion and stable head joining.


Pssm-ID: 428290  Cd Length: 149  Bit Score: 74.74  E-value: 8.12e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446057655   11 INDESLRRSLRAL--DLAATDLEPAMRKIAGTLLAETQFNFLDEGRP---GWTPSL-------AAQERDGQTLQDTgRLM 78
Cdd:pfam05069   1 DDLQAVEDALDRLlaKLSPADRRPLMRAIGRELRRSQEQRFEAQQAPdgsPWAPRKdtlrskkGRIKRGGKMLAKL-RLA 79
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446057655   79 GSVSTDHDDRQAA-VGTNVVYGPIHQFGGKTGRNE------SVELPARPFLPLTGDGELQpevvvpILDTIVRHLE 147
Cdd:pfam05069  80 RSIKTDAGADGASvVGTNKRIAAIHQFGGTAGRGRvskggpKVRYPARPLLGFSDEDEQE------IEDILLAHLS 149
tail_comp_S TIGR01635
phage virion morphogenesis (putative tail completion) protein; This model describes protein S ...
22-146 6.10e-17

phage virion morphogenesis (putative tail completion) protein; This model describes protein S of phage P2, suggested experimentally to act in tail completion and stable head joining, and related proteins from a number of phage. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 130696  Cd Length: 144  Bit Score: 72.59  E-value: 6.10e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446057655   22 ALDLAATDLEPAMRKIAGTLLAETQFNFLDEGRPGWTPSLA-------AQERDGQTLQDTG--RLMGSVSTDHDDRQAAV 92
Cdd:TIGR01635  14 LQVLDPKTRDKMLRRIAAQLASSTRKNIEAQQDPDGSAWAArkkkvrsKKGRIGKILKKFTqkRLMKSRTSDYGLVVALI 93
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 446057655   93 GTNVVYGPIHQFGGK--TGRNESVELPARPFLPLTGDGELQpevvvpILDTIVRHL 146
Cdd:TIGR01635  94 GARERYAAIHQYGGKarSGRLRKVQYPARPFLGLTKTDEAE------IEAAIRKAL 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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